Ggra10960.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra10960.t1
Unique NameGgra10960.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length189
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000938_piloncontigtig00000938_pilon:105866..106432 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005704023.1
PFAMsThioredoxin
Max annot lvl2759|Eukaryota
Evalue3.9e-40
EggNOG OGsCOG0526@1|root,KOG1672@2759|Eukaryota
Descriptionqueuosine biosynthetic process
COG categoryCO
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra10960Ggra10960Gracilaria gracilis GNS1m malegenetig00000938_pilon 105866..106432 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10960.t1.stop1Ggra10960.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000938_pilon 105866..105868 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10960.t1.CDS1Ggra10960.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000938_pilon 105866..106432 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10960.t1.exon1Ggra10960.t1.exon1Gracilaria gracilis GNS1m maleexontig00000938_pilon 105866..106432 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10960.t1.start1Ggra10960.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000938_pilon 106430..106432 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10960.t1Ggra10960.t1Gracilaria gracilis GNS1m malepolypeptidetig00000938_pilon 105866..106432 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra10960.t1 ID=Ggra10960.t1|Name=Ggra10960.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=189bp
MAQVQQLVESAVKDVVEGLEERLDSEIDRLNNLDEDDLESIRRKRMAEMK
KEAEEKAIWRRNGHGTVHHITEKEFFSRAKSSKRMVSIMFRPGTNRYAED
LVEHIGRIAPRHLETLFTVTDVEKAPFLCDRLNIRVLPSLILLKDSEIDQ
VLMGLDQISTTGKFTTAGIERRLHSFGILTNTDIADDE*
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spliced messenger RNA

>Ggra10960.t1 ID=Ggra10960.t1|Name=Ggra10960.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=567bp|location=Sequence derived from alignment at tig00000938_pilon:105866..106432- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCCAAGTGCAACAACTAGTTGAATCGGCGGTTAAGGATGTTGTTGA
AGGTCTGGAAGAACGGCTGGATTCGGAAATAGATCGGCTGAATAATCTGG
ATGAGGATGACTTGGAGTCTATTCGCCGTAAGCGCATGGCAGAGATGAAG
AAAGAAGCAGAAGAAAAGGCCATATGGCGAAGAAACGGTCATGGTACCGT
ACATCATATAACAGAGAAGGAGTTCTTTTCGAGAGCAAAATCTTCGAAAC
GCATGGTGTCCATAATGTTCAGACCAGGCACGAACCGATATGCAGAAGAC
TTAGTGGAGCACATTGGCAGAATAGCTCCACGCCATCTTGAAACTTTATT
CACAGTAACGGACGTTGAGAAGGCTCCCTTCTTGTGTGACAGGTTGAATA
TTCGTGTTCTCCCATCACTAATATTGCTCAAGGATTCTGAGATTGATCAG
GTGCTAATGGGTCTTGATCAAATAAGCACAACCGGCAAGTTTACAACTGC
TGGTATTGAGAGGCGATTGCATTCATTCGGTATTCTGACGAACACAGACA
TTGCTGATGATGAGTAG
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protein sequence of Ggra10960.t1

>Ggra10960.t1 ID=Ggra10960.t1|Name=Ggra10960.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=189bp
MAQVQQLVESAVKDVVEGLEERLDSEIDRLNNLDEDDLESIRRKRMAEMK
KEAEEKAIWRRNGHGTVHHITEKEFFSRAKSSKRMVSIMFRPGTNRYAED
LVEHIGRIAPRHLETLFTVTDVEKAPFLCDRLNIRVLPSLILLKDSEIDQ
VLMGLDQISTTGKFTTAGIERRLHSFGILTNTDIADDE*
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mRNA from alignment at tig00000938_pilon:105866..106432-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra10960.t1 ID=Ggra10960.t1|Name=Ggra10960.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=567bp|location=Sequence derived from alignment at tig00000938_pilon:105866..106432- (Gracilaria gracilis GNS1m male)
ATGGCCCAAGTGCAACAACTAGTTGAATCGGCGGTTAAGGATGTTGTTGA
AGGTCTGGAAGAACGGCTGGATTCGGAAATAGATCGGCTGAATAATCTGG
ATGAGGATGACTTGGAGTCTATTCGCCGTAAGCGCATGGCAGAGATGAAG
AAAGAAGCAGAAGAAAAGGCCATATGGCGAAGAAACGGTCATGGTACCGT
ACATCATATAACAGAGAAGGAGTTCTTTTCGAGAGCAAAATCTTCGAAAC
GCATGGTGTCCATAATGTTCAGACCAGGCACGAACCGATATGCAGAAGAC
TTAGTGGAGCACATTGGCAGAATAGCTCCACGCCATCTTGAAACTTTATT
CACAGTAACGGACGTTGAGAAGGCTCCCTTCTTGTGTGACAGGTTGAATA
TTCGTGTTCTCCCATCACTAATATTGCTCAAGGATTCTGAGATTGATCAG
GTGCTAATGGGTCTTGATCAAATAAGCACAACCGGCAAGTTTACAACTGC
TGGTATTGAGAGGCGATTGCATTCATTCGGTATTCTGACGAACACAGACA
TTGCTGATGATGAGTAG
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Coding sequence (CDS) from alignment at tig00000938_pilon:105866..106432-

>Ggra10960.t1 ID=Ggra10960.t1|Name=Ggra10960.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=567bp|location=Sequence derived from alignment at tig00000938_pilon:105866..106432- (Gracilaria gracilis GNS1m male)
ATGGCCCAAGTGCAACAACTAGTTGAATCGGCGGTTAAGGATGTTGTTGA
AGGTCTGGAAGAACGGCTGGATTCGGAAATAGATCGGCTGAATAATCTGG
ATGAGGATGACTTGGAGTCTATTCGCCGTAAGCGCATGGCAGAGATGAAG
AAAGAAGCAGAAGAAAAGGCCATATGGCGAAGAAACGGTCATGGTACCGT
ACATCATATAACAGAGAAGGAGTTCTTTTCGAGAGCAAAATCTTCGAAAC
GCATGGTGTCCATAATGTTCAGACCAGGCACGAACCGATATGCAGAAGAC
TTAGTGGAGCACATTGGCAGAATAGCTCCACGCCATCTTGAAACTTTATT
CACAGTAACGGACGTTGAGAAGGCTCCCTTCTTGTGTGACAGGTTGAATA
TTCGTGTTCTCCCATCACTAATATTGCTCAAGGATTCTGAGATTGATCAG
GTGCTAATGGGTCTTGATCAAATAAGCACAACCGGCAAGTTTACAACTGC
TGGTATTGAGAGGCGATTGCATTCATTCGGTATTCTGACGAACACAGACA
TTGCTGATGATGAGTAG
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