Ggra1096.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra1096.t1
Unique NameGgra1096.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length391
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000185_piloncontigtig00000185_pilon:125446..126618 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1096Ggra1096Gracilaria gracilis GNS1m malegenetig00000185_pilon 125446..126618 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1096.t1.start1Ggra1096.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000185_pilon 125446..125448 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1096.t1.CDS1Ggra1096.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000185_pilon 125446..126618 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1096.t1.exon1Ggra1096.t1.exon1Gracilaria gracilis GNS1m maleexontig00000185_pilon 125446..126618 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1096.t1.stop1Ggra1096.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000185_pilon 126616..126618 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1096.t1Ggra1096.t1Gracilaria gracilis GNS1m malepolypeptidetig00000185_pilon 125446..126618 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra1096.t1 ID=Ggra1096.t1|Name=Ggra1096.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=391bp
MDTPGEYNSIPNALPLSEITVARVRSVQAPRLIRTILFIAVFVAALAVVE
QIRDQAARRSHARAWMSYVDVGGGRSMLEKRQFSDVNRRTGWMPSSTWHM
RNDDAHWRRSTVFSWLRSSGTRSWTAARTVVVLLSPPAPLTHDSYVGTGH
CNQGYICRVHLYMVQVADETVMMVGYELKSASTNVTVPTTTKDCIAQMSE
AQVASIADQLVTYVSQWREEPVCGIDIDQVKEKIEETAAEVVQKCNVTTK
TEACYPHREVLRFPSASLQKTYRLYAGQCYWRRVCRAILEVHSMNNCVSS
SAGYNISSANNNVQSVDTWTKGNVRNTSRSVACNWANRLINTMAEDLGDL
SCTLDADAVCDGILAAAMSVATCNSTDQDACQSLNAAGCA*
back to top

spliced messenger RNA

>Ggra1096.t1 ID=Ggra1096.t1|Name=Ggra1096.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1173bp|location=Sequence derived from alignment at tig00000185_pilon:125446..126618+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGATACGCCTGGTGAGTACAACTCAATTCCAAACGCATTACCGCTGTC
CGAAATCACCGTAGCTCGTGTTCGTTCCGTTCAAGCGCCGCGCCTCATTA
GGACCATCTTGTTCATTGCCGTCTTTGTAGCCGCTTTAGCTGTGGTGGAG
CAGATACGAGATCAAGCCGCACGCCGGTCGCACGCACGAGCATGGATGTC
TTATGTTGATGTTGGTGGGGGCAGATCTATGCTTGAGAAGCGCCAGTTCT
CAGACGTGAATCGACGGACGGGCTGGATGCCATCTTCGACGTGGCATATG
CGGAACGACGATGCACACTGGCGGAGATCAACCGTATTTTCGTGGTTACG
AAGCTCTGGAACACGTTCGTGGACAGCTGCTCGGACTGTAGTTGTGCTTT
TATCTCCGCCGGCGCCATTGACGCATGACTCGTATGTTGGGACAGGTCAC
TGCAACCAAGGTTACATTTGTCGGGTGCATTTGTATATGGTTCAAGTCGC
AGACGAAACTGTTATGATGGTGGGCTATGAGCTGAAATCTGCTTCTACAA
ACGTGACTGTGCCAACGACGACGAAGGATTGTATCGCACAAATGTCAGAG
GCACAAGTTGCTTCAATCGCAGATCAGTTGGTGACGTATGTGAGCCAATG
GCGGGAGGAGCCGGTTTGCGGGATTGATATAGACCAAGTGAAAGAGAAAA
TCGAAGAGACGGCTGCCGAAGTGGTGCAAAAGTGTAACGTAACGACCAAA
ACTGAAGCTTGTTATCCCCATAGAGAAGTGCTCCGCTTCCCATCGGCATC
CCTGCAGAAGACGTACCGGCTGTATGCAGGACAATGTTATTGGAGAAGAG
TCTGTAGAGCGATACTTGAGGTGCATTCGATGAACAATTGCGTGTCGTCA
AGCGCGGGCTACAACATTTCCTCAGCGAACAACAACGTGCAGTCGGTGGA
TACGTGGACGAAAGGAAACGTTAGGAATACGAGCCGTAGCGTGGCGTGCA
ACTGGGCGAATAGACTGATCAACACTATGGCGGAGGACTTGGGCGATTTG
AGCTGCACGTTGGATGCCGATGCAGTCTGTGATGGCATACTTGCGGCCGC
CATGTCGGTTGCGACATGCAATAGCACGGACCAGGACGCGTGCCAGAGCT
TGAATGCTGCGGGTTGTGCTTGA
back to top

protein sequence of Ggra1096.t1

>Ggra1096.t1 ID=Ggra1096.t1|Name=Ggra1096.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=391bp
MDTPGEYNSIPNALPLSEITVARVRSVQAPRLIRTILFIAVFVAALAVVE
QIRDQAARRSHARAWMSYVDVGGGRSMLEKRQFSDVNRRTGWMPSSTWHM
RNDDAHWRRSTVFSWLRSSGTRSWTAARTVVVLLSPPAPLTHDSYVGTGH
CNQGYICRVHLYMVQVADETVMMVGYELKSASTNVTVPTTTKDCIAQMSE
AQVASIADQLVTYVSQWREEPVCGIDIDQVKEKIEETAAEVVQKCNVTTK
TEACYPHREVLRFPSASLQKTYRLYAGQCYWRRVCRAILEVHSMNNCVSS
SAGYNISSANNNVQSVDTWTKGNVRNTSRSVACNWANRLINTMAEDLGDL
SCTLDADAVCDGILAAAMSVATCNSTDQDACQSLNAAGCA*
back to top

mRNA from alignment at tig00000185_pilon:125446..126618+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra1096.t1 ID=Ggra1096.t1|Name=Ggra1096.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1173bp|location=Sequence derived from alignment at tig00000185_pilon:125446..126618+ (Gracilaria gracilis GNS1m male)
ATGGATACGCCTGGTGAGTACAACTCAATTCCAAACGCATTACCGCTGTC
CGAAATCACCGTAGCTCGTGTTCGTTCCGTTCAAGCGCCGCGCCTCATTA
GGACCATCTTGTTCATTGCCGTCTTTGTAGCCGCTTTAGCTGTGGTGGAG
CAGATACGAGATCAAGCCGCACGCCGGTCGCACGCACGAGCATGGATGTC
TTATGTTGATGTTGGTGGGGGCAGATCTATGCTTGAGAAGCGCCAGTTCT
CAGACGTGAATCGACGGACGGGCTGGATGCCATCTTCGACGTGGCATATG
CGGAACGACGATGCACACTGGCGGAGATCAACCGTATTTTCGTGGTTACG
AAGCTCTGGAACACGTTCGTGGACAGCTGCTCGGACTGTAGTTGTGCTTT
TATCTCCGCCGGCGCCATTGACGCATGACTCGTATGTTGGGACAGGTCAC
TGCAACCAAGGTTACATTTGTCGGGTGCATTTGTATATGGTTCAAGTCGC
AGACGAAACTGTTATGATGGTGGGCTATGAGCTGAAATCTGCTTCTACAA
ACGTGACTGTGCCAACGACGACGAAGGATTGTATCGCACAAATGTCAGAG
GCACAAGTTGCTTCAATCGCAGATCAGTTGGTGACGTATGTGAGCCAATG
GCGGGAGGAGCCGGTTTGCGGGATTGATATAGACCAAGTGAAAGAGAAAA
TCGAAGAGACGGCTGCCGAAGTGGTGCAAAAGTGTAACGTAACGACCAAA
ACTGAAGCTTGTTATCCCCATAGAGAAGTGCTCCGCTTCCCATCGGCATC
CCTGCAGAAGACGTACCGGCTGTATGCAGGACAATGTTATTGGAGAAGAG
TCTGTAGAGCGATACTTGAGGTGCATTCGATGAACAATTGCGTGTCGTCA
AGCGCGGGCTACAACATTTCCTCAGCGAACAACAACGTGCAGTCGGTGGA
TACGTGGACGAAAGGAAACGTTAGGAATACGAGCCGTAGCGTGGCGTGCA
ACTGGGCGAATAGACTGATCAACACTATGGCGGAGGACTTGGGCGATTTG
AGCTGCACGTTGGATGCCGATGCAGTCTGTGATGGCATACTTGCGGCCGC
CATGTCGGTTGCGACATGCAATAGCACGGACCAGGACGCGTGCCAGAGCT
TGAATGCTGCGGGTTGTGCTTGA
back to top

Coding sequence (CDS) from alignment at tig00000185_pilon:125446..126618+

>Ggra1096.t1 ID=Ggra1096.t1|Name=Ggra1096.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1173bp|location=Sequence derived from alignment at tig00000185_pilon:125446..126618+ (Gracilaria gracilis GNS1m male)
ATGGATACGCCTGGTGAGTACAACTCAATTCCAAACGCATTACCGCTGTC
CGAAATCACCGTAGCTCGTGTTCGTTCCGTTCAAGCGCCGCGCCTCATTA
GGACCATCTTGTTCATTGCCGTCTTTGTAGCCGCTTTAGCTGTGGTGGAG
CAGATACGAGATCAAGCCGCACGCCGGTCGCACGCACGAGCATGGATGTC
TTATGTTGATGTTGGTGGGGGCAGATCTATGCTTGAGAAGCGCCAGTTCT
CAGACGTGAATCGACGGACGGGCTGGATGCCATCTTCGACGTGGCATATG
CGGAACGACGATGCACACTGGCGGAGATCAACCGTATTTTCGTGGTTACG
AAGCTCTGGAACACGTTCGTGGACAGCTGCTCGGACTGTAGTTGTGCTTT
TATCTCCGCCGGCGCCATTGACGCATGACTCGTATGTTGGGACAGGTCAC
TGCAACCAAGGTTACATTTGTCGGGTGCATTTGTATATGGTTCAAGTCGC
AGACGAAACTGTTATGATGGTGGGCTATGAGCTGAAATCTGCTTCTACAA
ACGTGACTGTGCCAACGACGACGAAGGATTGTATCGCACAAATGTCAGAG
GCACAAGTTGCTTCAATCGCAGATCAGTTGGTGACGTATGTGAGCCAATG
GCGGGAGGAGCCGGTTTGCGGGATTGATATAGACCAAGTGAAAGAGAAAA
TCGAAGAGACGGCTGCCGAAGTGGTGCAAAAGTGTAACGTAACGACCAAA
ACTGAAGCTTGTTATCCCCATAGAGAAGTGCTCCGCTTCCCATCGGCATC
CCTGCAGAAGACGTACCGGCTGTATGCAGGACAATGTTATTGGAGAAGAG
TCTGTAGAGCGATACTTGAGGTGCATTCGATGAACAATTGCGTGTCGTCA
AGCGCGGGCTACAACATTTCCTCAGCGAACAACAACGTGCAGTCGGTGGA
TACGTGGACGAAAGGAAACGTTAGGAATACGAGCCGTAGCGTGGCGTGCA
ACTGGGCGAATAGACTGATCAACACTATGGCGGAGGACTTGGGCGATTTG
AGCTGCACGTTGGATGCCGATGCAGTCTGTGATGGCATACTTGCGGCCGC
CATGTCGGTTGCGACATGCAATAGCACGGACCAGGACGCGTGCCAGAGCT
TGAATGCTGCGGGTTGTGCTTGA
back to top