Ggra10959.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra10959.t1
Unique NameGgra10959.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length391
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000938_piloncontigtig00000938_pilon:104312..105484 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog45157.CME064CT
PFAMsChorismate_synt
Max annot lvl2759|Eukaryota
KEGG rclassRC00586
KEGG koko:K01736
KEGG ReactionR01714
KEGG Pathwayko00400,ko01100,ko01110,ko01130,ko01230,map00400,map01100,map01110,map01130,map01230
KEGG ModuleM00022
GOsGO:0000166,GO:0003674,GO:0003824,GO:0004107,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009072,GO:0009073,GO:0009423,GO:0009507,GO:0009536,GO:0009987,GO:0010181,GO:0016053,GO:0016829,GO:0016835,GO:0016838,GO:0019438,GO:0019752,GO:0032553,GO:0036094,GO:0043167,GO:0043168,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0043648,GO:0043650,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0046417,GO:0048037,GO:0050662,GO:0071704,GO:0097159,GO:0097367,GO:1901265,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901566,GO:1901576
Evalue3.36e-204
EggNOG OGsCOG0082@1|root,KOG4492@2759|Eukaryota
EC4.2.3.5
Descriptionchorismate synthase activity
COG categoryE
BRITEko00000,ko00001,ko00002,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra10959Ggra10959Gracilaria gracilis GNS1m malegenetig00000938_pilon 104312..105484 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10959.t1.start1Ggra10959.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000938_pilon 104312..104314 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10959.t1.CDS1Ggra10959.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000938_pilon 104312..105484 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10959.t1.exon1Ggra10959.t1.exon1Gracilaria gracilis GNS1m maleexontig00000938_pilon 104312..105484 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10959.t1.stop1Ggra10959.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000938_pilon 105482..105484 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10959.t1Ggra10959.t1Gracilaria gracilis GNS1m malepolypeptidetig00000938_pilon 104312..105484 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra10959.t1 ID=Ggra10959.t1|Name=Ggra10959.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=391bp
MGLGNSFGRVFRISTWGESHGGGVGVTVDGCPPRLPLHRDEIQHDLDRRR
PGQSRIVTPRNEPDAVEILSGIVDGTTIGTPIAMLVRNKDQRSKDYDTMA
VAYRPSHADAAYDAKYGIRAVAGGGRSSARETIGRVAAGAIARKILKMYA
DVDVVGYVKRVRDIEAPPVDPNTVTQEQVDSNIIRCPDPEAAEKMIAYVD
EVRKSGNSVGGVVEVIARNVPAGLGSPVFDKLEADLAKACMSLPASKGFE
IGSGFEGTMLTGIEHNDEFYIDDNGRTRTVTNRSGGIQGGISNGEPIIIR
VAFKPTSTIGRIQKTVTRGGEETELRGKGRHDPCVLPRAVPMVESMVALV
LADHLMQQIAQNSVTPVREEDAPNPLGPKPVSDSVTLNVG*
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spliced messenger RNA

>Ggra10959.t1 ID=Ggra10959.t1|Name=Ggra10959.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1173bp|location=Sequence derived from alignment at tig00000938_pilon:104312..105484+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGTTTAGGAAATTCTTTTGGACGCGTGTTTAGAATAAGTACTTGGGG
CGAAAGCCACGGGGGAGGTGTGGGTGTCACTGTGGATGGCTGCCCTCCTC
GACTACCGCTCCATCGCGATGAGATTCAGCACGATCTGGATCGTCGTCGC
CCCGGACAGAGCCGTATTGTCACTCCAAGGAACGAACCCGATGCTGTTGA
AATACTGTCTGGTATAGTTGATGGAACTACGATTGGGACACCTATTGCTA
TGCTGGTTCGCAACAAAGATCAACGCAGCAAGGATTATGACACCATGGCC
GTCGCTTATCGTCCGTCACATGCCGATGCAGCTTATGACGCAAAATACGG
CATTCGAGCTGTTGCTGGTGGCGGTCGTTCTTCTGCAAGAGAAACAATTG
GTAGGGTGGCAGCTGGCGCCATTGCACGAAAGATTTTGAAGATGTATGCC
GATGTCGACGTTGTGGGCTACGTCAAGCGTGTGCGAGACATTGAGGCCCC
TCCCGTTGATCCGAACACCGTAACGCAGGAACAAGTAGATTCAAACATTA
TCCGATGCCCTGATCCAGAGGCGGCTGAGAAGATGATTGCCTACGTTGAT
GAGGTCCGCAAGTCGGGAAACAGTGTTGGAGGGGTTGTTGAGGTCATTGC
AAGGAATGTTCCTGCCGGCCTGGGTTCTCCCGTTTTCGATAAGCTTGAAG
CAGACCTTGCAAAGGCCTGTATGAGCTTGCCCGCTTCGAAGGGTTTTGAG
ATTGGAAGCGGTTTCGAGGGCACAATGCTGACTGGTATCGAACATAATGA
CGAGTTTTATATCGATGACAACGGTAGAACGCGAACAGTCACAAATCGGA
GCGGAGGTATACAAGGGGGAATAAGTAATGGTGAACCCATCATAATCCGA
GTGGCCTTTAAGCCTACGAGTACGATTGGGAGAATTCAGAAGACTGTTAC
TCGTGGTGGGGAAGAAACTGAACTTAGAGGGAAGGGGAGACATGACCCAT
GTGTGCTACCAAGGGCAGTGCCAATGGTCGAATCAATGGTGGCATTGGTT
CTTGCAGACCACCTAATGCAACAAATTGCCCAGAACAGTGTGACACCTGT
TCGCGAGGAAGATGCACCTAATCCACTCGGACCTAAACCTGTCTCGGACT
CAGTAACTTTGAACGTCGGCTGA
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protein sequence of Ggra10959.t1

>Ggra10959.t1 ID=Ggra10959.t1|Name=Ggra10959.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=391bp
MGLGNSFGRVFRISTWGESHGGGVGVTVDGCPPRLPLHRDEIQHDLDRRR
PGQSRIVTPRNEPDAVEILSGIVDGTTIGTPIAMLVRNKDQRSKDYDTMA
VAYRPSHADAAYDAKYGIRAVAGGGRSSARETIGRVAAGAIARKILKMYA
DVDVVGYVKRVRDIEAPPVDPNTVTQEQVDSNIIRCPDPEAAEKMIAYVD
EVRKSGNSVGGVVEVIARNVPAGLGSPVFDKLEADLAKACMSLPASKGFE
IGSGFEGTMLTGIEHNDEFYIDDNGRTRTVTNRSGGIQGGISNGEPIIIR
VAFKPTSTIGRIQKTVTRGGEETELRGKGRHDPCVLPRAVPMVESMVALV
LADHLMQQIAQNSVTPVREEDAPNPLGPKPVSDSVTLNVG*
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mRNA from alignment at tig00000938_pilon:104312..105484+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra10959.t1 ID=Ggra10959.t1|Name=Ggra10959.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1173bp|location=Sequence derived from alignment at tig00000938_pilon:104312..105484+ (Gracilaria gracilis GNS1m male)
ATGGGTTTAGGAAATTCTTTTGGACGCGTGTTTAGAATAAGTACTTGGGG
CGAAAGCCACGGGGGAGGTGTGGGTGTCACTGTGGATGGCTGCCCTCCTC
GACTACCGCTCCATCGCGATGAGATTCAGCACGATCTGGATCGTCGTCGC
CCCGGACAGAGCCGTATTGTCACTCCAAGGAACGAACCCGATGCTGTTGA
AATACTGTCTGGTATAGTTGATGGAACTACGATTGGGACACCTATTGCTA
TGCTGGTTCGCAACAAAGATCAACGCAGCAAGGATTATGACACCATGGCC
GTCGCTTATCGTCCGTCACATGCCGATGCAGCTTATGACGCAAAATACGG
CATTCGAGCTGTTGCTGGTGGCGGTCGTTCTTCTGCAAGAGAAACAATTG
GTAGGGTGGCAGCTGGCGCCATTGCACGAAAGATTTTGAAGATGTATGCC
GATGTCGACGTTGTGGGCTACGTCAAGCGTGTGCGAGACATTGAGGCCCC
TCCCGTTGATCCGAACACCGTAACGCAGGAACAAGTAGATTCAAACATTA
TCCGATGCCCTGATCCAGAGGCGGCTGAGAAGATGATTGCCTACGTTGAT
GAGGTCCGCAAGTCGGGAAACAGTGTTGGAGGGGTTGTTGAGGTCATTGC
AAGGAATGTTCCTGCCGGCCTGGGTTCTCCCGTTTTCGATAAGCTTGAAG
CAGACCTTGCAAAGGCCTGTATGAGCTTGCCCGCTTCGAAGGGTTTTGAG
ATTGGAAGCGGTTTCGAGGGCACAATGCTGACTGGTATCGAACATAATGA
CGAGTTTTATATCGATGACAACGGTAGAACGCGAACAGTCACAAATCGGA
GCGGAGGTATACAAGGGGGAATAAGTAATGGTGAACCCATCATAATCCGA
GTGGCCTTTAAGCCTACGAGTACGATTGGGAGAATTCAGAAGACTGTTAC
TCGTGGTGGGGAAGAAACTGAACTTAGAGGGAAGGGGAGACATGACCCAT
GTGTGCTACCAAGGGCAGTGCCAATGGTCGAATCAATGGTGGCATTGGTT
CTTGCAGACCACCTAATGCAACAAATTGCCCAGAACAGTGTGACACCTGT
TCGCGAGGAAGATGCACCTAATCCACTCGGACCTAAACCTGTCTCGGACT
CAGTAACTTTGAACGTCGGCTGA
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Coding sequence (CDS) from alignment at tig00000938_pilon:104312..105484+

>Ggra10959.t1 ID=Ggra10959.t1|Name=Ggra10959.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1173bp|location=Sequence derived from alignment at tig00000938_pilon:104312..105484+ (Gracilaria gracilis GNS1m male)
ATGGGTTTAGGAAATTCTTTTGGACGCGTGTTTAGAATAAGTACTTGGGG
CGAAAGCCACGGGGGAGGTGTGGGTGTCACTGTGGATGGCTGCCCTCCTC
GACTACCGCTCCATCGCGATGAGATTCAGCACGATCTGGATCGTCGTCGC
CCCGGACAGAGCCGTATTGTCACTCCAAGGAACGAACCCGATGCTGTTGA
AATACTGTCTGGTATAGTTGATGGAACTACGATTGGGACACCTATTGCTA
TGCTGGTTCGCAACAAAGATCAACGCAGCAAGGATTATGACACCATGGCC
GTCGCTTATCGTCCGTCACATGCCGATGCAGCTTATGACGCAAAATACGG
CATTCGAGCTGTTGCTGGTGGCGGTCGTTCTTCTGCAAGAGAAACAATTG
GTAGGGTGGCAGCTGGCGCCATTGCACGAAAGATTTTGAAGATGTATGCC
GATGTCGACGTTGTGGGCTACGTCAAGCGTGTGCGAGACATTGAGGCCCC
TCCCGTTGATCCGAACACCGTAACGCAGGAACAAGTAGATTCAAACATTA
TCCGATGCCCTGATCCAGAGGCGGCTGAGAAGATGATTGCCTACGTTGAT
GAGGTCCGCAAGTCGGGAAACAGTGTTGGAGGGGTTGTTGAGGTCATTGC
AAGGAATGTTCCTGCCGGCCTGGGTTCTCCCGTTTTCGATAAGCTTGAAG
CAGACCTTGCAAAGGCCTGTATGAGCTTGCCCGCTTCGAAGGGTTTTGAG
ATTGGAAGCGGTTTCGAGGGCACAATGCTGACTGGTATCGAACATAATGA
CGAGTTTTATATCGATGACAACGGTAGAACGCGAACAGTCACAAATCGGA
GCGGAGGTATACAAGGGGGAATAAGTAATGGTGAACCCATCATAATCCGA
GTGGCCTTTAAGCCTACGAGTACGATTGGGAGAATTCAGAAGACTGTTAC
TCGTGGTGGGGAAGAAACTGAACTTAGAGGGAAGGGGAGACATGACCCAT
GTGTGCTACCAAGGGCAGTGCCAATGGTCGAATCAATGGTGGCATTGGTT
CTTGCAGACCACCTAATGCAACAAATTGCCCAGAACAGTGTGACACCTGT
TCGCGAGGAAGATGCACCTAATCCACTCGGACCTAAACCTGTCTCGGACT
CAGTAACTTTGAACGTCGGCTGA
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