Ggra10958.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra10958.t1
Unique NameGgra10958.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length219
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000938_piloncontigtig00000938_pilon:100848..101504 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog248742.XP_005648419.1
PFAMsTPMT
Max annot lvl3041|Chlorophyta
KEGG koko:K21552
Evalue4.73e-35
EggNOG OGs28JNP@1|root,2QS1V@2759|Eukaryota,37Q74@33090|Viridiplantae,34IKB@3041|Chlorophyta
EC2.1.1.165
DescriptionThiopurine S-methyltransferase (TPMT)
COG categoryS
BRITEko00000,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra10958Ggra10958Gracilaria gracilis GNS1m malegenetig00000938_pilon 100848..101504 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10958.t1.stop1Ggra10958.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000938_pilon 100848..100850 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10958.t1.CDS1Ggra10958.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000938_pilon 100848..101504 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10958.t1.exon1Ggra10958.t1.exon1Gracilaria gracilis GNS1m maleexontig00000938_pilon 100848..101504 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10958.t1.start1Ggra10958.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000938_pilon 101502..101504 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10958.t1Ggra10958.t1Gracilaria gracilis GNS1m malepolypeptidetig00000938_pilon 100848..101504 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra10958.t1 ID=Ggra10958.t1|Name=Ggra10958.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=219bp
MAHHFENPKGDPWESMWQEGVGRGEYFDKWKALPELVKQIENGVISKGQT
AFVPGCGRGYDVEVLSRSGLFNEVVGMDISPTGAREALDYLKSVDPKLPV
NFDVKQGDFFDSQLFSDPFCLVYDYTFFCAIPLERRGEWAQRMKSLVRKG
GTLITVMYPVGKELSEGGPPFGTDPKAYEELLEAAGGFERRDGPRLIDDE
RSHEGREGRTWWCRWERV*
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spliced messenger RNA

>Ggra10958.t1 ID=Ggra10958.t1|Name=Ggra10958.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=657bp|location=Sequence derived from alignment at tig00000938_pilon:100848..101504- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTCACCACTTCGAGAACCCGAAAGGTGACCCTTGGGAGTCAATGTG
GCAAGAAGGGGTCGGTCGTGGAGAGTACTTTGACAAATGGAAAGCGCTCC
CTGAGTTAGTGAAACAGATTGAGAACGGAGTTATATCGAAAGGACAAACC
GCATTTGTTCCTGGATGCGGTCGCGGCTATGATGTCGAAGTGCTGTCGCG
AAGCGGTTTGTTCAATGAAGTAGTAGGAATGGATATATCGCCAACGGGTG
CTCGTGAGGCGCTCGACTACCTCAAGTCAGTCGATCCGAAACTACCGGTG
AACTTTGACGTGAAGCAAGGAGATTTCTTTGACTCGCAGTTATTCTCCGA
CCCATTCTGTCTGGTGTACGACTACACCTTTTTCTGTGCAATCCCCCTAG
AGAGGCGCGGAGAATGGGCCCAAAGAATGAAATCACTTGTTCGAAAAGGT
GGGACATTAATCACTGTTATGTACCCTGTAGGGAAGGAGCTCTCAGAGGG
CGGACCCCCATTCGGAACTGATCCGAAAGCGTATGAGGAACTACTGGAAG
CAGCTGGTGGTTTCGAGAGACGAGATGGACCACGACTTATCGATGACGAG
CGATCCCATGAAGGACGAGAGGGTCGTACTTGGTGGTGTCGTTGGGAACG
TGTTTAA
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protein sequence of Ggra10958.t1

>Ggra10958.t1 ID=Ggra10958.t1|Name=Ggra10958.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=219bp
MAHHFENPKGDPWESMWQEGVGRGEYFDKWKALPELVKQIENGVISKGQT
AFVPGCGRGYDVEVLSRSGLFNEVVGMDISPTGAREALDYLKSVDPKLPV
NFDVKQGDFFDSQLFSDPFCLVYDYTFFCAIPLERRGEWAQRMKSLVRKG
GTLITVMYPVGKELSEGGPPFGTDPKAYEELLEAAGGFERRDGPRLIDDE
RSHEGREGRTWWCRWERV*
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mRNA from alignment at tig00000938_pilon:100848..101504-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra10958.t1 ID=Ggra10958.t1|Name=Ggra10958.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=657bp|location=Sequence derived from alignment at tig00000938_pilon:100848..101504- (Gracilaria gracilis GNS1m male)
ATGGCTCACCACTTCGAGAACCCGAAAGGTGACCCTTGGGAGTCAATGTG
GCAAGAAGGGGTCGGTCGTGGAGAGTACTTTGACAAATGGAAAGCGCTCC
CTGAGTTAGTGAAACAGATTGAGAACGGAGTTATATCGAAAGGACAAACC
GCATTTGTTCCTGGATGCGGTCGCGGCTATGATGTCGAAGTGCTGTCGCG
AAGCGGTTTGTTCAATGAAGTAGTAGGAATGGATATATCGCCAACGGGTG
CTCGTGAGGCGCTCGACTACCTCAAGTCAGTCGATCCGAAACTACCGGTG
AACTTTGACGTGAAGCAAGGAGATTTCTTTGACTCGCAGTTATTCTCCGA
CCCATTCTGTCTGGTGTACGACTACACCTTTTTCTGTGCAATCCCCCTAG
AGAGGCGCGGAGAATGGGCCCAAAGAATGAAATCACTTGTTCGAAAAGGT
GGGACATTAATCACTGTTATGTACCCTGTAGGGAAGGAGCTCTCAGAGGG
CGGACCCCCATTCGGAACTGATCCGAAAGCGTATGAGGAACTACTGGAAG
CAGCTGGTGGTTTCGAGAGACGAGATGGACCACGACTTATCGATGACGAG
CGATCCCATGAAGGACGAGAGGGTCGTACTTGGTGGTGTCGTTGGGAACG
TGTTTAA
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Coding sequence (CDS) from alignment at tig00000938_pilon:100848..101504-

>Ggra10958.t1 ID=Ggra10958.t1|Name=Ggra10958.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=657bp|location=Sequence derived from alignment at tig00000938_pilon:100848..101504- (Gracilaria gracilis GNS1m male)
ATGGCTCACCACTTCGAGAACCCGAAAGGTGACCCTTGGGAGTCAATGTG
GCAAGAAGGGGTCGGTCGTGGAGAGTACTTTGACAAATGGAAAGCGCTCC
CTGAGTTAGTGAAACAGATTGAGAACGGAGTTATATCGAAAGGACAAACC
GCATTTGTTCCTGGATGCGGTCGCGGCTATGATGTCGAAGTGCTGTCGCG
AAGCGGTTTGTTCAATGAAGTAGTAGGAATGGATATATCGCCAACGGGTG
CTCGTGAGGCGCTCGACTACCTCAAGTCAGTCGATCCGAAACTACCGGTG
AACTTTGACGTGAAGCAAGGAGATTTCTTTGACTCGCAGTTATTCTCCGA
CCCATTCTGTCTGGTGTACGACTACACCTTTTTCTGTGCAATCCCCCTAG
AGAGGCGCGGAGAATGGGCCCAAAGAATGAAATCACTTGTTCGAAAAGGT
GGGACATTAATCACTGTTATGTACCCTGTAGGGAAGGAGCTCTCAGAGGG
CGGACCCCCATTCGGAACTGATCCGAAAGCGTATGAGGAACTACTGGAAG
CAGCTGGTGGTTTCGAGAGACGAGATGGACCACGACTTATCGATGACGAG
CGATCCCATGAAGGACGAGAGGGTCGTACTTGGTGGTGTCGTTGGGAACG
TGTTTAA
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