Ggra10957.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra10957.t1
Unique Name	Ggra10957.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	359

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000938_pilon	contig	tig00000938_pilon:98810..99886 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	7719.XP_002127827.1
Preferred name	RLBP1
PFAMs	CRAL_TRIO,CRAL_TRIO_N
Max annot lvl	33208\|Metazoa
KEGG ko	ko:K19625
GOs	GO:0001523,GO:0003008,GO:0003674,GO:0005488,GO:0005501,GO:0005502,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006629,GO:0006720,GO:0006721,GO:0006766,GO:0006775,GO:0006776,GO:0007600,GO:0007601,GO:0008150,GO:0008152,GO:0008289,GO:0009987,GO:0016101,GO:0016918,GO:0019840,GO:0019842,GO:0032501,GO:0036094,GO:0044237,GO:0044238,GO:0044255,GO:0044281,GO:0044297,GO:0044424,GO:0044444,GO:0044464,GO:0050877,GO:0050953,GO:0071704
Evalue	1.25e-18
EggNOG OGs	KOG1471@1\|root,KOG1471@2759\|Eukaryota,39CE2@33154\|Opisthokonta,3B98E@33208\|Metazoa,3D19K@33213\|Bilateria,489ZJ@7711\|Chordata
Description	Retinaldehyde binding protein
COG category	I
BRITE	ko00000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra10957	Ggra10957	Gracilaria gracilis GNS1m male	gene	tig00000938_pilon 98810..99886 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra10957.t1.start1	Ggra10957.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000938_pilon 98810..98812 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra10957.t1.CDS1	Ggra10957.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000938_pilon 98810..99886 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra10957.t1.exon1	Ggra10957.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000938_pilon 98810..99886 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra10957.t1.stop1	Ggra10957.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000938_pilon 99884..99886 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra10957.t1	Ggra10957.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000938_pilon 98810..99886 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000938_pilon:98810..99886+
coding sequence from alignment at tig00000938_pilon:98810..99886+

mRNA sequence

>Ggra10957.t1 ID=Ggra10957.t1|Name=Ggra10957.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=359bp
MCPSSVRSPMAQELSNQSTDAEHFPVRHHAEENLERMAELESVPVEGSRS
PSPTSTMITEYEFNPLDDTDPLAPPRQYRRAAFELIGETYERRQKAMAEM
RELVREYSEQPGDTTVEQQHQRDHAKQSDDRILVLFVRSSKFRIDKAFRE
YTGFCEAHAQHVWLRDVNVDLVAQLFSSGSYQILPKTDVERRLILCMDMD
FLVPFIENLESSRSEELLGALFGVIETLMFDIRAQIFGVVVLADLSGLKM
QTFGYFTAQEYLLSLNLLQHAYPLRAKAMLIVREPWYVRGLFNFMKPFMS
ANARNSLNVFGDDVAAVQSFIPEEALTENFGGALKLDEYEHRSEWTEAVK
MRFPSSSN*

spliced messenger RNA

>Ggra10957.t1 ID=Ggra10957.t1|Name=Ggra10957.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1077bp|location=Sequence derived from alignment at tig00000938_pilon:98810..99886+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTGCCCTTCTAGCGTGAGGTCGCCTATGGCCCAGGAACTCTCGAATCA
GAGTACTGATGCTGAACACTTTCCTGTCCGTCATCATGCAGAGGAAAATT
TGGAACGAATGGCTGAGCTAGAATCCGTTCCAGTGGAAGGCAGCAGGAGT
CCCTCACCAACGTCGACAATGATAACGGAATATGAATTTAACCCGCTTGA
TGATACAGACCCTCTCGCGCCCCCTCGACAATACAGGCGTGCAGCGTTTG
AGTTGATTGGTGAAACATACGAGAGACGACAAAAAGCGATGGCTGAAATG
AGAGAACTAGTGAGAGAATATAGCGAGCAACCGGGGGATACGACCGTAGA
ACAACAGCATCAACGAGACCATGCGAAACAATCCGACGACCGTATCCTTG
TTCTCTTTGTGCGCAGCTCAAAATTTAGGATCGACAAAGCGTTCCGAGAG
TATACAGGTTTTTGTGAAGCTCACGCTCAACATGTGTGGTTGAGAGATGT
AAACGTAGATTTGGTGGCTCAACTTTTTTCCTCTGGCTCGTATCAAATTC
TTCCCAAGACGGATGTTGAAAGACGATTGATTCTGTGTATGGATATGGAT
TTCTTGGTGCCGTTTATCGAGAACTTGGAAAGCTCTCGATCTGAAGAACT
CCTTGGGGCGTTGTTCGGGGTTATTGAAACTCTAATGTTCGATATCAGGG
CGCAGATATTCGGAGTTGTGGTTCTTGCTGATCTAAGTGGATTGAAAATG
CAGACTTTTGGATACTTCACTGCACAAGAGTACTTGTTATCACTGAACTT
ATTGCAGCATGCTTACCCTCTACGTGCGAAGGCCATGTTGATCGTACGAG
AGCCGTGGTATGTTCGCGGACTATTTAACTTCATGAAACCCTTCATGAGC
GCCAACGCTAGGAACTCTCTCAATGTTTTTGGCGACGATGTCGCAGCAGT
ACAATCTTTCATTCCGGAGGAAGCCTTGACCGAAAATTTTGGAGGGGCGT
TGAAACTTGATGAATATGAACACAGGAGCGAATGGACTGAAGCAGTGAAG
ATGCGATTCCCGTCTTCCTCGAATTAA

protein sequence of Ggra10957.t1

>Ggra10957.t1 ID=Ggra10957.t1|Name=Ggra10957.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=359bp
MCPSSVRSPMAQELSNQSTDAEHFPVRHHAEENLERMAELESVPVEGSRS
PSPTSTMITEYEFNPLDDTDPLAPPRQYRRAAFELIGETYERRQKAMAEM
RELVREYSEQPGDTTVEQQHQRDHAKQSDDRILVLFVRSSKFRIDKAFRE
YTGFCEAHAQHVWLRDVNVDLVAQLFSSGSYQILPKTDVERRLILCMDMD
FLVPFIENLESSRSEELLGALFGVIETLMFDIRAQIFGVVVLADLSGLKM
QTFGYFTAQEYLLSLNLLQHAYPLRAKAMLIVREPWYVRGLFNFMKPFMS
ANARNSLNVFGDDVAAVQSFIPEEALTENFGGALKLDEYEHRSEWTEAVK
MRFPSSSN*

mRNA from alignment at tig00000938_pilon:98810..99886+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra10957.t1 ID=Ggra10957.t1|Name=Ggra10957.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1077bp|location=Sequence derived from alignment at tig00000938_pilon:98810..99886+ (Gracilaria gracilis GNS1m male)
ATGTGCCCTTCTAGCGTGAGGTCGCCTATGGCCCAGGAACTCTCGAATCA
GAGTACTGATGCTGAACACTTTCCTGTCCGTCATCATGCAGAGGAAAATT
TGGAACGAATGGCTGAGCTAGAATCCGTTCCAGTGGAAGGCAGCAGGAGT
CCCTCACCAACGTCGACAATGATAACGGAATATGAATTTAACCCGCTTGA
TGATACAGACCCTCTCGCGCCCCCTCGACAATACAGGCGTGCAGCGTTTG
AGTTGATTGGTGAAACATACGAGAGACGACAAAAAGCGATGGCTGAAATG
AGAGAACTAGTGAGAGAATATAGCGAGCAACCGGGGGATACGACCGTAGA
ACAACAGCATCAACGAGACCATGCGAAACAATCCGACGACCGTATCCTTG
TTCTCTTTGTGCGCAGCTCAAAATTTAGGATCGACAAAGCGTTCCGAGAG
TATACAGGTTTTTGTGAAGCTCACGCTCAACATGTGTGGTTGAGAGATGT
AAACGTAGATTTGGTGGCTCAACTTTTTTCCTCTGGCTCGTATCAAATTC
TTCCCAAGACGGATGTTGAAAGACGATTGATTCTGTGTATGGATATGGAT
TTCTTGGTGCCGTTTATCGAGAACTTGGAAAGCTCTCGATCTGAAGAACT
CCTTGGGGCGTTGTTCGGGGTTATTGAAACTCTAATGTTCGATATCAGGG
CGCAGATATTCGGAGTTGTGGTTCTTGCTGATCTAAGTGGATTGAAAATG
CAGACTTTTGGATACTTCACTGCACAAGAGTACTTGTTATCACTGAACTT
ATTGCAGCATGCTTACCCTCTACGTGCGAAGGCCATGTTGATCGTACGAG
AGCCGTGGTATGTTCGCGGACTATTTAACTTCATGAAACCCTTCATGAGC
GCCAACGCTAGGAACTCTCTCAATGTTTTTGGCGACGATGTCGCAGCAGT
ACAATCTTTCATTCCGGAGGAAGCCTTGACCGAAAATTTTGGAGGGGCGT
TGAAACTTGATGAATATGAACACAGGAGCGAATGGACTGAAGCAGTGAAG
ATGCGATTCCCGTCTTCCTCGAATTAA

Coding sequence (CDS) from alignment at tig00000938_pilon:98810..99886+

>Ggra10957.t1 ID=Ggra10957.t1|Name=Ggra10957.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1077bp|location=Sequence derived from alignment at tig00000938_pilon:98810..99886+ (Gracilaria gracilis GNS1m male)
ATGTGCCCTTCTAGCGTGAGGTCGCCTATGGCCCAGGAACTCTCGAATCA
GAGTACTGATGCTGAACACTTTCCTGTCCGTCATCATGCAGAGGAAAATT
TGGAACGAATGGCTGAGCTAGAATCCGTTCCAGTGGAAGGCAGCAGGAGT
CCCTCACCAACGTCGACAATGATAACGGAATATGAATTTAACCCGCTTGA
TGATACAGACCCTCTCGCGCCCCCTCGACAATACAGGCGTGCAGCGTTTG
AGTTGATTGGTGAAACATACGAGAGACGACAAAAAGCGATGGCTGAAATG
AGAGAACTAGTGAGAGAATATAGCGAGCAACCGGGGGATACGACCGTAGA
ACAACAGCATCAACGAGACCATGCGAAACAATCCGACGACCGTATCCTTG
TTCTCTTTGTGCGCAGCTCAAAATTTAGGATCGACAAAGCGTTCCGAGAG
TATACAGGTTTTTGTGAAGCTCACGCTCAACATGTGTGGTTGAGAGATGT
AAACGTAGATTTGGTGGCTCAACTTTTTTCCTCTGGCTCGTATCAAATTC
TTCCCAAGACGGATGTTGAAAGACGATTGATTCTGTGTATGGATATGGAT
TTCTTGGTGCCGTTTATCGAGAACTTGGAAAGCTCTCGATCTGAAGAACT
CCTTGGGGCGTTGTTCGGGGTTATTGAAACTCTAATGTTCGATATCAGGG
CGCAGATATTCGGAGTTGTGGTTCTTGCTGATCTAAGTGGATTGAAAATG
CAGACTTTTGGATACTTCACTGCACAAGAGTACTTGTTATCACTGAACTT
ATTGCAGCATGCTTACCCTCTACGTGCGAAGGCCATGTTGATCGTACGAG
AGCCGTGGTATGTTCGCGGACTATTTAACTTCATGAAACCCTTCATGAGC
GCCAACGCTAGGAACTCTCTCAATGTTTTTGGCGACGATGTCGCAGCAGT
ACAATCTTTCATTCCGGAGGAAGCCTTGACCGAAAATTTTGGAGGGGCGT
TGAAACTTGATGAATATGAACACAGGAGCGAATGGACTGAAGCAGTGAAG
ATGCGATTCCCGTCTTCCTCGAATTAA