Ggra10956.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra10956.t1
Unique NameGgra10956.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length340
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000938_piloncontigtig00000938_pilon:96688..97707 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog36331.EPrPI00000025374
PFAMsAIG1,MMR_HSR1
Max annot lvl121069|Pythiales
Evalue9.33e-17
EggNOG OGs28ND8@1|root,2QUYQ@2759|Eukaryota,1MI42@121069|Pythiales
Descriptionfunction. Source PGD
COG categoryT
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra10956Ggra10956Gracilaria gracilis GNS1m malegenetig00000938_pilon 96688..97707 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10956.t1.stop1Ggra10956.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000938_pilon 96688..96690 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10956.t1.CDS1Ggra10956.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000938_pilon 96688..97707 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10956.t1.exon1Ggra10956.t1.exon1Gracilaria gracilis GNS1m maleexontig00000938_pilon 96688..97707 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10956.t1.start1Ggra10956.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000938_pilon 97705..97707 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10956.t1Ggra10956.t1Gracilaria gracilis GNS1m malepolypeptidetig00000938_pilon 96688..97707 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra10956.t1 ID=Ggra10956.t1|Name=Ggra10956.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=340bp
MFTSRFSTHGHENAQRTPAPSHVPLSTHKNIFGSPFTSHSTKIVLLGNPG
VGKSTIHNTLLGMLDSDSGICLGEGLTRTTRTTCNAGFTCVDTPGLDDVY
HKEQAARQISAALRGPCNVKLVFVTTLESGRVRTADITTLAIILEALSQV
VGDVRDKYLLIINKCEPSVYEQLSNAASEMEARARVFGPYKAISDVSRFA
LLRYEPVASGKTNVMLEQLDVEKLRKVITDIPTIELPHEPVVSLDVARYE
QSKEELDDNINSFYQGLDRVLEGASSGDFENEKFTASRGAFGDGAEYGHA
ERGGGKIGRGLERITDLLQGLEPLTALGHLIFGIVMIFL*
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spliced messenger RNA

>Ggra10956.t1 ID=Ggra10956.t1|Name=Ggra10956.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1020bp|location=Sequence derived from alignment at tig00000938_pilon:96688..97707- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTCACATCCAGATTCTCGACACATGGCCATGAGAACGCACAGCGCAC
CCCCGCTCCGTCCCACGTGCCTCTGAGCACCCACAAAAATATCTTCGGCT
CGCCCTTCACCTCCCATTCAACAAAGATCGTACTACTTGGCAACCCGGGT
GTGGGAAAGTCTACAATACACAACACTCTACTGGGCATGCTAGATTCTGA
TTCCGGGATTTGTTTAGGTGAAGGTCTTACACGCACCACGAGGACAACCT
GTAACGCGGGCTTCACCTGCGTCGACACTCCGGGTTTAGACGATGTCTAT
CACAAGGAGCAAGCTGCCCGACAGATTTCAGCTGCGTTGCGAGGTCCATG
TAACGTCAAACTGGTGTTCGTAACCACTCTCGAGTCTGGTCGAGTGCGCA
CCGCAGATATCACCACTCTTGCAATCATTCTGGAGGCTTTGAGCCAGGTG
GTTGGGGATGTGAGGGACAAATATTTGCTTATCATCAACAAATGCGAGCC
ATCTGTTTATGAGCAACTTTCGAATGCAGCTTCGGAGATGGAGGCCCGGG
CGCGTGTGTTTGGACCATACAAGGCCATTAGCGATGTCTCCCGTTTTGCG
CTGCTGCGATATGAACCAGTGGCAAGCGGTAAGACAAACGTTATGCTCGA
ACAGTTGGACGTTGAGAAACTGCGAAAAGTGATTACAGATATTCCAACAA
TTGAATTACCCCACGAGCCCGTTGTTAGTCTGGATGTGGCACGATATGAA
CAAAGCAAGGAAGAATTGGATGACAATATCAACTCATTCTACCAGGGCCT
TGATCGCGTCCTTGAAGGTGCAAGTTCAGGAGATTTTGAAAATGAGAAAT
TCACTGCGTCACGTGGTGCGTTTGGGGATGGTGCAGAATATGGTCACGCT
GAGCGCGGTGGGGGAAAGATTGGCCGCGGTTTGGAGAGAATCACAGATTT
ACTGCAAGGACTAGAACCTTTGACAGCGTTGGGGCATTTGATTTTTGGTA
TTGTCATGATTTTCTTGTGA
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protein sequence of Ggra10956.t1

>Ggra10956.t1 ID=Ggra10956.t1|Name=Ggra10956.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=340bp
MFTSRFSTHGHENAQRTPAPSHVPLSTHKNIFGSPFTSHSTKIVLLGNPG
VGKSTIHNTLLGMLDSDSGICLGEGLTRTTRTTCNAGFTCVDTPGLDDVY
HKEQAARQISAALRGPCNVKLVFVTTLESGRVRTADITTLAIILEALSQV
VGDVRDKYLLIINKCEPSVYEQLSNAASEMEARARVFGPYKAISDVSRFA
LLRYEPVASGKTNVMLEQLDVEKLRKVITDIPTIELPHEPVVSLDVARYE
QSKEELDDNINSFYQGLDRVLEGASSGDFENEKFTASRGAFGDGAEYGHA
ERGGGKIGRGLERITDLLQGLEPLTALGHLIFGIVMIFL*
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mRNA from alignment at tig00000938_pilon:96688..97707-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra10956.t1 ID=Ggra10956.t1|Name=Ggra10956.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1020bp|location=Sequence derived from alignment at tig00000938_pilon:96688..97707- (Gracilaria gracilis GNS1m male)
ATGTTCACATCCAGATTCTCGACACATGGCCATGAGAACGCACAGCGCAC
CCCCGCTCCGTCCCACGTGCCTCTGAGCACCCACAAAAATATCTTCGGCT
CGCCCTTCACCTCCCATTCAACAAAGATCGTACTACTTGGCAACCCGGGT
GTGGGAAAGTCTACAATACACAACACTCTACTGGGCATGCTAGATTCTGA
TTCCGGGATTTGTTTAGGTGAAGGTCTTACACGCACCACGAGGACAACCT
GTAACGCGGGCTTCACCTGCGTCGACACTCCGGGTTTAGACGATGTCTAT
CACAAGGAGCAAGCTGCCCGACAGATTTCAGCTGCGTTGCGAGGTCCATG
TAACGTCAAACTGGTGTTCGTAACCACTCTCGAGTCTGGTCGAGTGCGCA
CCGCAGATATCACCACTCTTGCAATCATTCTGGAGGCTTTGAGCCAGGTG
GTTGGGGATGTGAGGGACAAATATTTGCTTATCATCAACAAATGCGAGCC
ATCTGTTTATGAGCAACTTTCGAATGCAGCTTCGGAGATGGAGGCCCGGG
CGCGTGTGTTTGGACCATACAAGGCCATTAGCGATGTCTCCCGTTTTGCG
CTGCTGCGATATGAACCAGTGGCAAGCGGTAAGACAAACGTTATGCTCGA
ACAGTTGGACGTTGAGAAACTGCGAAAAGTGATTACAGATATTCCAACAA
TTGAATTACCCCACGAGCCCGTTGTTAGTCTGGATGTGGCACGATATGAA
CAAAGCAAGGAAGAATTGGATGACAATATCAACTCATTCTACCAGGGCCT
TGATCGCGTCCTTGAAGGTGCAAGTTCAGGAGATTTTGAAAATGAGAAAT
TCACTGCGTCACGTGGTGCGTTTGGGGATGGTGCAGAATATGGTCACGCT
GAGCGCGGTGGGGGAAAGATTGGCCGCGGTTTGGAGAGAATCACAGATTT
ACTGCAAGGACTAGAACCTTTGACAGCGTTGGGGCATTTGATTTTTGGTA
TTGTCATGATTTTCTTGTGA
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Coding sequence (CDS) from alignment at tig00000938_pilon:96688..97707-

>Ggra10956.t1 ID=Ggra10956.t1|Name=Ggra10956.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1020bp|location=Sequence derived from alignment at tig00000938_pilon:96688..97707- (Gracilaria gracilis GNS1m male)
ATGTTCACATCCAGATTCTCGACACATGGCCATGAGAACGCACAGCGCAC
CCCCGCTCCGTCCCACGTGCCTCTGAGCACCCACAAAAATATCTTCGGCT
CGCCCTTCACCTCCCATTCAACAAAGATCGTACTACTTGGCAACCCGGGT
GTGGGAAAGTCTACAATACACAACACTCTACTGGGCATGCTAGATTCTGA
TTCCGGGATTTGTTTAGGTGAAGGTCTTACACGCACCACGAGGACAACCT
GTAACGCGGGCTTCACCTGCGTCGACACTCCGGGTTTAGACGATGTCTAT
CACAAGGAGCAAGCTGCCCGACAGATTTCAGCTGCGTTGCGAGGTCCATG
TAACGTCAAACTGGTGTTCGTAACCACTCTCGAGTCTGGTCGAGTGCGCA
CCGCAGATATCACCACTCTTGCAATCATTCTGGAGGCTTTGAGCCAGGTG
GTTGGGGATGTGAGGGACAAATATTTGCTTATCATCAACAAATGCGAGCC
ATCTGTTTATGAGCAACTTTCGAATGCAGCTTCGGAGATGGAGGCCCGGG
CGCGTGTGTTTGGACCATACAAGGCCATTAGCGATGTCTCCCGTTTTGCG
CTGCTGCGATATGAACCAGTGGCAAGCGGTAAGACAAACGTTATGCTCGA
ACAGTTGGACGTTGAGAAACTGCGAAAAGTGATTACAGATATTCCAACAA
TTGAATTACCCCACGAGCCCGTTGTTAGTCTGGATGTGGCACGATATGAA
CAAAGCAAGGAAGAATTGGATGACAATATCAACTCATTCTACCAGGGCCT
TGATCGCGTCCTTGAAGGTGCAAGTTCAGGAGATTTTGAAAATGAGAAAT
TCACTGCGTCACGTGGTGCGTTTGGGGATGGTGCAGAATATGGTCACGCT
GAGCGCGGTGGGGGAAAGATTGGCCGCGGTTTGGAGAGAATCACAGATTT
ACTGCAAGGACTAGAACCTTTGACAGCGTTGGGGCATTTGATTTTTGGTA
TTGTCATGATTTTCTTGTGA
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