Ggra1095.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra1095.t1
Unique NameGgra1095.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length186
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000185_piloncontigtig00000185_pilon:121929..122486 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog10224.XP_006816607.1
PFAMsEGF,Ephrin_rec_like,HYR,Sushi,VWA,hEGF
Max annot lvl33208|Metazoa
KEGG koko:K17495
Evalue9.2e-07
EggNOG OGsKOG1217@1|root,KOG3544@1|root,KOG1217@2759|Eukaryota,KOG3544@2759|Eukaryota,3ATCV@33154|Opisthokonta,3C49M@33208|Metazoa,3DE0Z@33213|Bilateria
DescriptionDomain abundant in complement control proteins; SUSHI repeat; short complement-like repeat (SCR)
COG categoryT
BRITEko00000,ko01009
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1095Ggra1095Gracilaria gracilis GNS1m malegenetig00000185_pilon 121929..122486 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1095.t1.start1Ggra1095.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000185_pilon 121929..121931 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1095.t1.CDS1Ggra1095.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000185_pilon 121929..122486 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1095.t1.exon1Ggra1095.t1.exon1Gracilaria gracilis GNS1m maleexontig00000185_pilon 121929..122486 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1095.t1.stop1Ggra1095.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000185_pilon 122484..122486 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1095.t1Ggra1095.t1Gracilaria gracilis GNS1m malepolypeptidetig00000185_pilon 121929..122486 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra1095.t1 ID=Ggra1095.t1|Name=Ggra1095.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=186bp
MTESAGCNANVCFALDGSGSISNQGFQNQKDFVIDVSAIINPNPCKLSAL
VYGSNVTLISPLTDDIDRFLVAVNSARFDSSSSTSIDDGILQCAAQLEVG
DERRAVIVLLGDGRFNSGSDPIRLAGDFKNDFGDGAALHTVGADFFDIDN
LRGIASAGGGRTFEVESFEDVLTLTELIVGENSIA*
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spliced messenger RNA

>Ggra1095.t1 ID=Ggra1095.t1|Name=Ggra1095.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=558bp|location=Sequence derived from alignment at tig00000185_pilon:121929..122486+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACCGAATCCGCAGGTTGTAATGCTAACGTTTGTTTCGCCCTTGATGG
AAGTGGTTCAATATCTAATCAGGGCTTTCAAAATCAAAAGGATTTTGTCA
TTGATGTTTCGGCCATCATCAACCCCAACCCTTGCAAGCTTTCCGCTTTG
GTATATGGAAGCAATGTTACTCTGATTTCACCGTTAACAGATGACATTGA
CCGTTTTCTAGTAGCGGTTAACAGTGCCAGGTTTGATTCGTCTTCTTCAA
CATCAATTGATGATGGCATTCTGCAATGCGCCGCTCAATTAGAGGTTGGT
GATGAACGTCGTGCTGTGATCGTGCTATTGGGTGATGGACGATTTAATTC
CGGAAGTGACCCTATCCGTCTGGCTGGTGACTTTAAGAACGACTTCGGCG
ATGGGGCCGCGTTGCACACAGTCGGTGCGGACTTTTTCGACATTGACAAC
TTGCGGGGTATTGCAAGCGCAGGTGGTGGTAGGACCTTTGAAGTGGAAAG
TTTTGAAGATGTCCTTACTCTGACGGAGCTTATAGTGGGAGAGAACTCAA
TAGCATAA
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protein sequence of Ggra1095.t1

>Ggra1095.t1 ID=Ggra1095.t1|Name=Ggra1095.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=186bp
MTESAGCNANVCFALDGSGSISNQGFQNQKDFVIDVSAIINPNPCKLSAL
VYGSNVTLISPLTDDIDRFLVAVNSARFDSSSSTSIDDGILQCAAQLEVG
DERRAVIVLLGDGRFNSGSDPIRLAGDFKNDFGDGAALHTVGADFFDIDN
LRGIASAGGGRTFEVESFEDVLTLTELIVGENSIA*
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mRNA from alignment at tig00000185_pilon:121929..122486+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra1095.t1 ID=Ggra1095.t1|Name=Ggra1095.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=558bp|location=Sequence derived from alignment at tig00000185_pilon:121929..122486+ (Gracilaria gracilis GNS1m male)
ATGACCGAATCCGCAGGTTGTAATGCTAACGTTTGTTTCGCCCTTGATGG
AAGTGGTTCAATATCTAATCAGGGCTTTCAAAATCAAAAGGATTTTGTCA
TTGATGTTTCGGCCATCATCAACCCCAACCCTTGCAAGCTTTCCGCTTTG
GTATATGGAAGCAATGTTACTCTGATTTCACCGTTAACAGATGACATTGA
CCGTTTTCTAGTAGCGGTTAACAGTGCCAGGTTTGATTCGTCTTCTTCAA
CATCAATTGATGATGGCATTCTGCAATGCGCCGCTCAATTAGAGGTTGGT
GATGAACGTCGTGCTGTGATCGTGCTATTGGGTGATGGACGATTTAATTC
CGGAAGTGACCCTATCCGTCTGGCTGGTGACTTTAAGAACGACTTCGGCG
ATGGGGCCGCGTTGCACACAGTCGGTGCGGACTTTTTCGACATTGACAAC
TTGCGGGGTATTGCAAGCGCAGGTGGTGGTAGGACCTTTGAAGTGGAAAG
TTTTGAAGATGTCCTTACTCTGACGGAGCTTATAGTGGGAGAGAACTCAA
TAGCATAA
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Coding sequence (CDS) from alignment at tig00000185_pilon:121929..122486+

>Ggra1095.t1 ID=Ggra1095.t1|Name=Ggra1095.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=558bp|location=Sequence derived from alignment at tig00000185_pilon:121929..122486+ (Gracilaria gracilis GNS1m male)
ATGACCGAATCCGCAGGTTGTAATGCTAACGTTTGTTTCGCCCTTGATGG
AAGTGGTTCAATATCTAATCAGGGCTTTCAAAATCAAAAGGATTTTGTCA
TTGATGTTTCGGCCATCATCAACCCCAACCCTTGCAAGCTTTCCGCTTTG
GTATATGGAAGCAATGTTACTCTGATTTCACCGTTAACAGATGACATTGA
CCGTTTTCTAGTAGCGGTTAACAGTGCCAGGTTTGATTCGTCTTCTTCAA
CATCAATTGATGATGGCATTCTGCAATGCGCCGCTCAATTAGAGGTTGGT
GATGAACGTCGTGCTGTGATCGTGCTATTGGGTGATGGACGATTTAATTC
CGGAAGTGACCCTATCCGTCTGGCTGGTGACTTTAAGAACGACTTCGGCG
ATGGGGCCGCGTTGCACACAGTCGGTGCGGACTTTTTCGACATTGACAAC
TTGCGGGGTATTGCAAGCGCAGGTGGTGGTAGGACCTTTGAAGTGGAAAG
TTTTGAAGATGTCCTTACTCTGACGGAGCTTATAGTGGGAGAGAACTCAA
TAGCATAA
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