Ggra10902.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra10902.t1
Unique NameGgra10902.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length319
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000098_piloncontigtig00000098_pilon:91536..92492 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra10902Ggra10902Gracilaria gracilis GNS1m malegenetig00000098_pilon 91536..92492 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10902.t1.start1Ggra10902.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000098_pilon 91536..91538 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10902.t1.CDS1Ggra10902.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000098_pilon 91536..92492 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10902.t1.exon1Ggra10902.t1.exon1Gracilaria gracilis GNS1m maleexontig00000098_pilon 91536..92492 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10902.t1.stop1Ggra10902.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000098_pilon 92490..92492 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10902.t1Ggra10902.t1Gracilaria gracilis GNS1m malepolypeptidetig00000098_pilon 91536..92492 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra10902.t1 ID=Ggra10902.t1|Name=Ggra10902.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=319bp
MNNYGTVPPAASSSPHKAHPDTAARAASHNAPRRRVVLLCAALLAALSLL
LLGTLAGAPRERSHAAPRVAAHDMRSSDGVLARVPAPQLLAEVGARARCA
RLRRYGRLAGTEAALVSCALEPAASTRQRAARADEQAGALGAQDESEHHH
EHHDDHQHAHHHHEHHDDHQHAHHHHEHHDDHQHAHHHHEHHDDHQHAHH
HHEHHDDHQHAHDHHGGNAFFSGALGHPASPHSFNYACHMPALQACGADC
GARASDGEPRWRCFMRCARGNCFVIGAACAKPQFDQCAASCAGREPFVPC
AKACFDALCPVTDAQVQR*
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spliced messenger RNA

>Ggra10902.t1 ID=Ggra10902.t1|Name=Ggra10902.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=957bp|location=Sequence derived from alignment at tig00000098_pilon:91536..92492+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAACAACTACGGCACAGTGCCGCCCGCAGCGTCGTCGTCTCCCCACAA
AGCGCACCCAGACACCGCCGCGCGCGCAGCGTCGCACAACGCCCCTCGCC
GTCGCGTCGTCTTGCTCTGCGCCGCTTTGCTGGCCGCTCTCTCCCTGCTG
CTGCTGGGCACTCTGGCCGgcgcaccgcgcgagcgctcgcacgctgcgcc
gcgcgtcgcagcgcaCGACATGCGGTCCAGCGACGGCGTGCTTGCGCGCG
TGCCGGCGCCCCAGCTGCTTGCTGAGGTGGGCGCGCGCGCGCGCTGTGCG
CGCTTGCGCAGGTACGGCCGCCTCGCCGGCACGGAAGCCGCGCTCGTGAG
CTGCGCTCTGGAGCCCGCCGCGTCAACGCGTCAACGGGCCGCACGCGCAG
ACGAGCAGGCGGGCGCGCTCGGCGCTCAGGACGAGTCCGAGCATCATCAC
GAGCACCATGACGACCATCAGCACGCACATCATCATCACGAGCACCATGA
CGACCATCAGCACGCACATCATCATCACGAGCACCATGACGACCATCAGC
ACGCACATCATCATCACGAGCACCATGACGACCATCAGCACGCACATCAT
CATCACGAGCACCATGACGACCATCAGCACGCACATGATCATCACGGTGG
CAACGCGTTCTTTTCCGGAGCGCTCGGACACCCTGCCAGCCCGCATTCGT
TCAACTACGCGTGCCACATGCCGGCGCTGCAGGCGTGCGGCGCCGACTGC
GGCGCGCGTGCGAGCGACGGCGAGCCGCGCTGGCGCTGCTTCATGCGCTG
CGCGCGCGGCAATTGTTTCGTGATTGGCGCGGCGTGCGCCAAGCCGCAGT
TCGACCAGTGTGCCGCATCGTGCGCGGGACGTGAGCCGTTTGTGCCTTGC
GCCAAGGCGTGCTTTGACGCGCTTTGCCCTGTTACGGACGCTCAAGTACA
ACGGTAG
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protein sequence of Ggra10902.t1

>Ggra10902.t1 ID=Ggra10902.t1|Name=Ggra10902.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=319bp
MNNYGTVPPAASSSPHKAHPDTAARAASHNAPRRRVVLLCAALLAALSLL
LLGTLAGAPRERSHAAPRVAAHDMRSSDGVLARVPAPQLLAEVGARARCA
RLRRYGRLAGTEAALVSCALEPAASTRQRAARADEQAGALGAQDESEHHH
EHHDDHQHAHHHHEHHDDHQHAHHHHEHHDDHQHAHHHHEHHDDHQHAHH
HHEHHDDHQHAHDHHGGNAFFSGALGHPASPHSFNYACHMPALQACGADC
GARASDGEPRWRCFMRCARGNCFVIGAACAKPQFDQCAASCAGREPFVPC
AKACFDALCPVTDAQVQR*
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mRNA from alignment at tig00000098_pilon:91536..92492+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra10902.t1 ID=Ggra10902.t1|Name=Ggra10902.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=957bp|location=Sequence derived from alignment at tig00000098_pilon:91536..92492+ (Gracilaria gracilis GNS1m male)
ATGAACAACTACGGCACAGTGCCGCCCGCAGCGTCGTCGTCTCCCCACAA
AGCGCACCCAGACACCGCCGCGCGCGCAGCGTCGCACAACGCCCCTCGCC
GTCGCGTCGTCTTGCTCTGCGCCGCTTTGCTGGCCGCTCTCTCCCTGCTG
CTGCTGGGCACTCTGGCCGgcgcaccgcgcgagcgctcgcacgctgcgcc
gcgcgtcgcagcgcaCGACATGCGGTCCAGCGACGGCGTGCTTGCGCGCG
TGCCGGCGCCCCAGCTGCTTGCTGAGGTGGGCGCGCGCGCGCGCTGTGCG
CGCTTGCGCAGGTACGGCCGCCTCGCCGGCACGGAAGCCGCGCTCGTGAG
CTGCGCTCTGGAGCCCGCCGCGTCAACGCGTCAACGGGCCGCACGCGCAG
ACGAGCAGGCGGGCGCGCTCGGCGCTCAGGACGAGTCCGAGCATCATCAC
GAGCACCATGACGACCATCAGCACGCACATCATCATCACGAGCACCATGA
CGACCATCAGCACGCACATCATCATCACGAGCACCATGACGACCATCAGC
ACGCACATCATCATCACGAGCACCATGACGACCATCAGCACGCACATCAT
CATCACGAGCACCATGACGACCATCAGCACGCACATGATCATCACGGTGG
CAACGCGTTCTTTTCCGGAGCGCTCGGACACCCTGCCAGCCCGCATTCGT
TCAACTACGCGTGCCACATGCCGGCGCTGCAGGCGTGCGGCGCCGACTGC
GGCGCGCGTGCGAGCGACGGCGAGCCGCGCTGGCGCTGCTTCATGCGCTG
CGCGCGCGGCAATTGTTTCGTGATTGGCGCGGCGTGCGCCAAGCCGCAGT
TCGACCAGTGTGCCGCATCGTGCGCGGGACGTGAGCCGTTTGTGCCTTGC
GCCAAGGCGTGCTTTGACGCGCTTTGCCCTGTTACGGACGCTCAAGTACA
ACGGTAG
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Coding sequence (CDS) from alignment at tig00000098_pilon:91536..92492+

>Ggra10902.t1 ID=Ggra10902.t1|Name=Ggra10902.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=957bp|location=Sequence derived from alignment at tig00000098_pilon:91536..92492+ (Gracilaria gracilis GNS1m male)
ATGAACAACTACGGCACAGTGCCGCCCGCAGCGTCGTCGTCTCCCCACAA
AGCGCACCCAGACACCGCCGCGCGCGCAGCGTCGCACAACGCCCCTCGCC
GTCGCGTCGTCTTGCTCTGCGCCGCTTTGCTGGCCGCTCTCTCCCTGCTG
CTGCTGGGCACTCTGGCCGgcgcaccgcgcgagcgctcgcacgctgcgcc
gcgcgtcgcagcgcaCGACATGCGGTCCAGCGACGGCGTGCTTGCGCGCG
TGCCGGCGCCCCAGCTGCTTGCTGAGGTGGGCGCGCGCGCGCGCTGTGCG
CGCTTGCGCAGGTACGGCCGCCTCGCCGGCACGGAAGCCGCGCTCGTGAG
CTGCGCTCTGGAGCCCGCCGCGTCAACGCGTCAACGGGCCGCACGCGCAG
ACGAGCAGGCGGGCGCGCTCGGCGCTCAGGACGAGTCCGAGCATCATCAC
GAGCACCATGACGACCATCAGCACGCACATCATCATCACGAGCACCATGA
CGACCATCAGCACGCACATCATCATCACGAGCACCATGACGACCATCAGC
ACGCACATCATCATCACGAGCACCATGACGACCATCAGCACGCACATCAT
CATCACGAGCACCATGACGACCATCAGCACGCACATGATCATCACGGTGG
CAACGCGTTCTTTTCCGGAGCGCTCGGACACCCTGCCAGCCCGCATTCGT
TCAACTACGCGTGCCACATGCCGGCGCTGCAGGCGTGCGGCGCCGACTGC
GGCGCGCGTGCGAGCGACGGCGAGCCGCGCTGGCGCTGCTTCATGCGCTG
CGCGCGCGGCAATTGTTTCGTGATTGGCGCGGCGTGCGCCAAGCCGCAGT
TCGACCAGTGTGCCGCATCGTGCGCGGGACGTGAGCCGTTTGTGCCTTGC
GCCAAGGCGTGCTTTGACGCGCTTTGCCCTGTTACGGACGCTCAAGTACA
ACGGTAG
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