Ggra10900.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra10900.t1
Unique NameGgra10900.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length195
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000098_piloncontigtig00000098_pilon:83902..84486 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra10900Ggra10900Gracilaria gracilis GNS1m malegenetig00000098_pilon 83902..84486 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10900.t1.start1Ggra10900.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000098_pilon 83902..83904 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10900.t1.CDS1Ggra10900.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000098_pilon 83902..84486 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10900.t1.exon1Ggra10900.t1.exon1Gracilaria gracilis GNS1m maleexontig00000098_pilon 83902..84486 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10900.t1.stop1Ggra10900.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000098_pilon 84484..84486 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10900.t1Ggra10900.t1Gracilaria gracilis GNS1m malepolypeptidetig00000098_pilon 83902..84486 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra10900.t1 ID=Ggra10900.t1|Name=Ggra10900.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=195bp
MNKNICRDETRGNLYRADVTSLEMLAADFVRRFPVIQFNEKGDTSELDKS
TVYDFLVVHLSHYKHFLNGCYMGAGATYDNMVESDDVSPVYGEETFATGR
AKSLVICKRRNTTYQSGSGSAIFDLTHNATLQGRKRRTLVDAALGEVLIA
VGVDSDINPIHVRFTVERTGRKILVIKGALPAAVDVERPNNLPI*
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spliced messenger RNA

>Ggra10900.t1 ID=Ggra10900.t1|Name=Ggra10900.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=585bp|location=Sequence derived from alignment at tig00000098_pilon:83902..84486+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAACAAAAACATATGTAGGGACGAGACTCGGGGTAATCTGTATCGAGC
AGATGTCACTAGTCTCGAAATGCTTGCGGCAGACTTTGTCCGCCGATTTC
CGGTAATACAATTCAATGAAAAAGGAGATACTTCGGAATTGGACAAGTCC
ACAGTATATGACTTTTTGGTGGTGCACCTATCCCACTACAAACATTTTTT
GAATGGGTGCTACATGGGTGCTGGTGCTACCTACGACAACATGGTGGAAA
GCGATGATGTATCCCCTGTATATGGGGAGGAAACCTTTGCCACAGGTAGG
GCAAAATCTTTAGTCATATGCAAGCGCCGAAATACAACATACCAGAGTGG
AAGTGGAAGCGCCATATTTGATTTGACTCATAATGCCACTTTGCAGGGCC
GCAAGCGAAGGACGCTAGTGGACGCGGCACTTGGAGAGGTACTGATTGCC
GTGGGCGTGGACTCAGATATTAATCCAATTCATGTGCGCTTCACGGTTGA
AAGAACGGGAAGAAAGATCTTGGTTATCAAAGGGGCACTTCCTGCTGCTG
TCGATGTGGAAAGGCCGAACAACCTGCCGATATGA
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protein sequence of Ggra10900.t1

>Ggra10900.t1 ID=Ggra10900.t1|Name=Ggra10900.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=195bp
MNKNICRDETRGNLYRADVTSLEMLAADFVRRFPVIQFNEKGDTSELDKS
TVYDFLVVHLSHYKHFLNGCYMGAGATYDNMVESDDVSPVYGEETFATGR
AKSLVICKRRNTTYQSGSGSAIFDLTHNATLQGRKRRTLVDAALGEVLIA
VGVDSDINPIHVRFTVERTGRKILVIKGALPAAVDVERPNNLPI*
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mRNA from alignment at tig00000098_pilon:83902..84486+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra10900.t1 ID=Ggra10900.t1|Name=Ggra10900.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=585bp|location=Sequence derived from alignment at tig00000098_pilon:83902..84486+ (Gracilaria gracilis GNS1m male)
ATGAACAAAAACATATGTAGGGACGAGACTCGGGGTAATCTGTATCGAGC
AGATGTCACTAGTCTCGAAATGCTTGCGGCAGACTTTGTCCGCCGATTTC
CGGTAATACAATTCAATGAAAAAGGAGATACTTCGGAATTGGACAAGTCC
ACAGTATATGACTTTTTGGTGGTGCACCTATCCCACTACAAACATTTTTT
GAATGGGTGCTACATGGGTGCTGGTGCTACCTACGACAACATGGTGGAAA
GCGATGATGTATCCCCTGTATATGGGGAGGAAACCTTTGCCACAGGTAGG
GCAAAATCTTTAGTCATATGCAAGCGCCGAAATACAACATACCAGAGTGG
AAGTGGAAGCGCCATATTTGATTTGACTCATAATGCCACTTTGCAGGGCC
GCAAGCGAAGGACGCTAGTGGACGCGGCACTTGGAGAGGTACTGATTGCC
GTGGGCGTGGACTCAGATATTAATCCAATTCATGTGCGCTTCACGGTTGA
AAGAACGGGAAGAAAGATCTTGGTTATCAAAGGGGCACTTCCTGCTGCTG
TCGATGTGGAAAGGCCGAACAACCTGCCGATATGA
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Coding sequence (CDS) from alignment at tig00000098_pilon:83902..84486+

>Ggra10900.t1 ID=Ggra10900.t1|Name=Ggra10900.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=585bp|location=Sequence derived from alignment at tig00000098_pilon:83902..84486+ (Gracilaria gracilis GNS1m male)
ATGAACAAAAACATATGTAGGGACGAGACTCGGGGTAATCTGTATCGAGC
AGATGTCACTAGTCTCGAAATGCTTGCGGCAGACTTTGTCCGCCGATTTC
CGGTAATACAATTCAATGAAAAAGGAGATACTTCGGAATTGGACAAGTCC
ACAGTATATGACTTTTTGGTGGTGCACCTATCCCACTACAAACATTTTTT
GAATGGGTGCTACATGGGTGCTGGTGCTACCTACGACAACATGGTGGAAA
GCGATGATGTATCCCCTGTATATGGGGAGGAAACCTTTGCCACAGGTAGG
GCAAAATCTTTAGTCATATGCAAGCGCCGAAATACAACATACCAGAGTGG
AAGTGGAAGCGCCATATTTGATTTGACTCATAATGCCACTTTGCAGGGCC
GCAAGCGAAGGACGCTAGTGGACGCGGCACTTGGAGAGGTACTGATTGCC
GTGGGCGTGGACTCAGATATTAATCCAATTCATGTGCGCTTCACGGTTGA
AAGAACGGGAAGAAAGATCTTGGTTATCAAAGGGGCACTTCCTGCTGCTG
TCGATGTGGAAAGGCCGAACAACCTGCCGATATGA
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