Ggra1089.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra1089.t1
Unique NameGgra1089.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length467
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000185_piloncontigtig00000185_pilon:27706..29106 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog29850.GGTG_10887T0
Max annot lvl4751|Fungi
Evalue4.95e-41
EggNOG OGs292CQ@1|root,2R994@2759|Eukaryota,38M38@33154|Opisthokonta,3PNZM@4751|Fungi,3R882@4890|Ascomycota,21EKA@147550|Sordariomycetes,41QDK@639021|Magnaporthales
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1089Ggra1089Gracilaria gracilis GNS1m malegenetig00000185_pilon 27706..29106 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1089.t1.stop1Ggra1089.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000185_pilon 27706..27708 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1089.t1.CDS1Ggra1089.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000185_pilon 27706..29106 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1089.t1.exon1Ggra1089.t1.exon1Gracilaria gracilis GNS1m maleexontig00000185_pilon 27706..29106 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1089.t1.start1Ggra1089.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000185_pilon 29104..29106 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1089.t1Ggra1089.t1Gracilaria gracilis GNS1m malepolypeptidetig00000185_pilon 27706..29106 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra1089.t1 ID=Ggra1089.t1|Name=Ggra1089.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=467bp
MDNVTFAIVITSLLWLSVANGRPLPALNSYSSGVKQISADVFTCDSSDEL
LNAVCAVVLPKINSELQAKGFSVNSDQFLFRFEDKSDKKIVGGCSRTAKL
KRQLVSAKISRSARIDVSGDSLVEPFAIRLELPVSVTARFDIKQRYGARV
IGSCSNYASDSFSYKGSISTIADVMVGISFNPSFGTVKSGDYALVIEPKL
AVLASLRNTDIKLRASGVSPFSGILTFISGASSALFKSVTALFTGDSISK
ILEEFVKVDLGHAVLLGFEALPGELENVIYDKLTSVAAKSIEKKASGFSE
DIGNSLKQSLRNALKLDEEGRRVFIISRDVVNLVNSLGVGANVISDAPSP
SSIAECKDADRICSSTTDLAFLYSQCRPAQGKCSALKNEHREKYKLSSVI
ISEPKIAARNRRRSPPAPRAPFPSPKPPTLPPNISPSDPCPNEVKGFCFG
CQGCQGCQDLISRCRV*
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spliced messenger RNA

>Ggra1089.t1 ID=Ggra1089.t1|Name=Ggra1089.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1401bp|location=Sequence derived from alignment at tig00000185_pilon:27706..29106- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGACAACGTAACATTTGCCATAGTCATAACCTCACTACTTTGGCTCTC
TGTCGCAAACGGCCGCCCGCTTCCGGCTCTCAACTCTTATTCATCGGGCG
TGAAACAGATATCTGCCGATGTATTCACATGCGACTCATCTGATGAACTA
CTGAACGCAGTCTGCGCAGTGGTATTGCCCAAAATCAACTCGGAATTGCA
AGCTAAAGGCTTTTCCGTGAACAGTGACCAATTCCTCTTCCGGTTTGAAG
ACAAGTCTGACAAGAAAATTGTTGGCGGCTGTTCGCGAACGGCGAAGCTA
AAGCGTCAACTTGTGTCTGCAAAAATATCCCGTTCTGCACGAATTGATGT
GTCAGGTGACTCCCTCGTTGAACCGTTTGCGATTCGTCTCGAGCTCCCTG
TGTCAGTCACAGCCCGTTTTGACATCAAACAACGATATGGTGCGAGGGTT
ATAGGATCTTGTTCAAACTATGCAAGCGATAGCTTCTCGTATAAGGGTTC
CATTTCTACTATTGCTGACGTCATGGTTGGCATTTCCTTCAACCCATCTT
TTGGAACGGTCAAGTCGGGCGATTATGCACTGGTAATCGAACCGAAGCTG
GCCGTCCTCGCGAGTCTTAGAAACACCGATATCAAACTAAGGGCGTCTGG
TGTGAGTCCTTTCTCAGGAATTTTGACGTTCATTTCGGGTGCCTCTTCTG
CCTTGTTCAAGAGTGTCACGGCACTTTTCACGGGCGACAGCATATCAAAA
ATCTTGGAGGAATTTGTGAAAGTTGACCTCGGACACGCGGTGCTGCTTGG
ATTCGAGGCGCTTCCCGGAGAGCTTGAAAATGTGATCTATGACAAGCTAA
CCTCCGTCGCAGCGAAAAGCATTGAGAAGAAAGCAAGTGGGTTCAGTGAA
GATATTGGGAACAGTTTGAAACAGTCATTAAGAAACGCGCTCAAGCTTGA
CGAAGAAGGAAGACGCGTGTTCATCATCAGCCGCGACGTGGTAAATCTTG
TCAACTCTCTTGGGGTTGGTGCGAATGTGATTTCTGACGCACCATCCCCG
TCGTCAATTGCTGAGTGTAAGGACGCCGACCGGATTTGTTCAAGCACTAC
TGATTTGGCTTTTCTGTACTCACAGTGTCGTCCCGCTCAGGGGAAATGTT
CGGCTTTGAAGAATGAGCACAGGGAAAAGTACAAACTTTCCTCGGTGATC
ATATCTGAGCCGAAAATAGCAGCTCGAAACCGTCGCAGAAGTCCTCCAGC
CCCAAGGGCCCCATTTCCCTCTCCGAAACCGCCCACGCTTCCCCCAAATA
TCAGCCCGAGCGATCCATGTCCGAATGAGGTGAAAGGATTCTGCTTCGGT
TGTCAGGGATGTCAGGGATGTCAGGACCTTATCAGCCGATGCAGGGTCTA
A
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protein sequence of Ggra1089.t1

>Ggra1089.t1 ID=Ggra1089.t1|Name=Ggra1089.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=467bp
MDNVTFAIVITSLLWLSVANGRPLPALNSYSSGVKQISADVFTCDSSDEL
LNAVCAVVLPKINSELQAKGFSVNSDQFLFRFEDKSDKKIVGGCSRTAKL
KRQLVSAKISRSARIDVSGDSLVEPFAIRLELPVSVTARFDIKQRYGARV
IGSCSNYASDSFSYKGSISTIADVMVGISFNPSFGTVKSGDYALVIEPKL
AVLASLRNTDIKLRASGVSPFSGILTFISGASSALFKSVTALFTGDSISK
ILEEFVKVDLGHAVLLGFEALPGELENVIYDKLTSVAAKSIEKKASGFSE
DIGNSLKQSLRNALKLDEEGRRVFIISRDVVNLVNSLGVGANVISDAPSP
SSIAECKDADRICSSTTDLAFLYSQCRPAQGKCSALKNEHREKYKLSSVI
ISEPKIAARNRRRSPPAPRAPFPSPKPPTLPPNISPSDPCPNEVKGFCFG
CQGCQGCQDLISRCRV*
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mRNA from alignment at tig00000185_pilon:27706..29106-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra1089.t1 ID=Ggra1089.t1|Name=Ggra1089.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1401bp|location=Sequence derived from alignment at tig00000185_pilon:27706..29106- (Gracilaria gracilis GNS1m male)
ATGGACAACGTAACATTTGCCATAGTCATAACCTCACTACTTTGGCTCTC
TGTCGCAAACGGCCGCCCGCTTCCGGCTCTCAACTCTTATTCATCGGGCG
TGAAACAGATATCTGCCGATGTATTCACATGCGACTCATCTGATGAACTA
CTGAACGCAGTCTGCGCAGTGGTATTGCCCAAAATCAACTCGGAATTGCA
AGCTAAAGGCTTTTCCGTGAACAGTGACCAATTCCTCTTCCGGTTTGAAG
ACAAGTCTGACAAGAAAATTGTTGGCGGCTGTTCGCGAACGGCGAAGCTA
AAGCGTCAACTTGTGTCTGCAAAAATATCCCGTTCTGCACGAATTGATGT
GTCAGGTGACTCCCTCGTTGAACCGTTTGCGATTCGTCTCGAGCTCCCTG
TGTCAGTCACAGCCCGTTTTGACATCAAACAACGATATGGTGCGAGGGTT
ATAGGATCTTGTTCAAACTATGCAAGCGATAGCTTCTCGTATAAGGGTTC
CATTTCTACTATTGCTGACGTCATGGTTGGCATTTCCTTCAACCCATCTT
TTGGAACGGTCAAGTCGGGCGATTATGCACTGGTAATCGAACCGAAGCTG
GCCGTCCTCGCGAGTCTTAGAAACACCGATATCAAACTAAGGGCGTCTGG
TGTGAGTCCTTTCTCAGGAATTTTGACGTTCATTTCGGGTGCCTCTTCTG
CCTTGTTCAAGAGTGTCACGGCACTTTTCACGGGCGACAGCATATCAAAA
ATCTTGGAGGAATTTGTGAAAGTTGACCTCGGACACGCGGTGCTGCTTGG
ATTCGAGGCGCTTCCCGGAGAGCTTGAAAATGTGATCTATGACAAGCTAA
CCTCCGTCGCAGCGAAAAGCATTGAGAAGAAAGCAAGTGGGTTCAGTGAA
GATATTGGGAACAGTTTGAAACAGTCATTAAGAAACGCGCTCAAGCTTGA
CGAAGAAGGAAGACGCGTGTTCATCATCAGCCGCGACGTGGTAAATCTTG
TCAACTCTCTTGGGGTTGGTGCGAATGTGATTTCTGACGCACCATCCCCG
TCGTCAATTGCTGAGTGTAAGGACGCCGACCGGATTTGTTCAAGCACTAC
TGATTTGGCTTTTCTGTACTCACAGTGTCGTCCCGCTCAGGGGAAATGTT
CGGCTTTGAAGAATGAGCACAGGGAAAAGTACAAACTTTCCTCGGTGATC
ATATCTGAGCCGAAAATAGCAGCTCGAAACCGTCGCAGAAGTCCTCCAGC
CCCAAGGGCCCCATTTCCCTCTCCGAAACCGCCCACGCTTCCCCCAAATA
TCAGCCCGAGCGATCCATGTCCGAATGAGGTGAAAGGATTCTGCTTCGGT
TGTCAGGGATGTCAGGGATGTCAGGACCTTATCAGCCGATGCAGGGTCTA
A
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Coding sequence (CDS) from alignment at tig00000185_pilon:27706..29106-

>Ggra1089.t1 ID=Ggra1089.t1|Name=Ggra1089.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1401bp|location=Sequence derived from alignment at tig00000185_pilon:27706..29106- (Gracilaria gracilis GNS1m male)
ATGGACAACGTAACATTTGCCATAGTCATAACCTCACTACTTTGGCTCTC
TGTCGCAAACGGCCGCCCGCTTCCGGCTCTCAACTCTTATTCATCGGGCG
TGAAACAGATATCTGCCGATGTATTCACATGCGACTCATCTGATGAACTA
CTGAACGCAGTCTGCGCAGTGGTATTGCCCAAAATCAACTCGGAATTGCA
AGCTAAAGGCTTTTCCGTGAACAGTGACCAATTCCTCTTCCGGTTTGAAG
ACAAGTCTGACAAGAAAATTGTTGGCGGCTGTTCGCGAACGGCGAAGCTA
AAGCGTCAACTTGTGTCTGCAAAAATATCCCGTTCTGCACGAATTGATGT
GTCAGGTGACTCCCTCGTTGAACCGTTTGCGATTCGTCTCGAGCTCCCTG
TGTCAGTCACAGCCCGTTTTGACATCAAACAACGATATGGTGCGAGGGTT
ATAGGATCTTGTTCAAACTATGCAAGCGATAGCTTCTCGTATAAGGGTTC
CATTTCTACTATTGCTGACGTCATGGTTGGCATTTCCTTCAACCCATCTT
TTGGAACGGTCAAGTCGGGCGATTATGCACTGGTAATCGAACCGAAGCTG
GCCGTCCTCGCGAGTCTTAGAAACACCGATATCAAACTAAGGGCGTCTGG
TGTGAGTCCTTTCTCAGGAATTTTGACGTTCATTTCGGGTGCCTCTTCTG
CCTTGTTCAAGAGTGTCACGGCACTTTTCACGGGCGACAGCATATCAAAA
ATCTTGGAGGAATTTGTGAAAGTTGACCTCGGACACGCGGTGCTGCTTGG
ATTCGAGGCGCTTCCCGGAGAGCTTGAAAATGTGATCTATGACAAGCTAA
CCTCCGTCGCAGCGAAAAGCATTGAGAAGAAAGCAAGTGGGTTCAGTGAA
GATATTGGGAACAGTTTGAAACAGTCATTAAGAAACGCGCTCAAGCTTGA
CGAAGAAGGAAGACGCGTGTTCATCATCAGCCGCGACGTGGTAAATCTTG
TCAACTCTCTTGGGGTTGGTGCGAATGTGATTTCTGACGCACCATCCCCG
TCGTCAATTGCTGAGTGTAAGGACGCCGACCGGATTTGTTCAAGCACTAC
TGATTTGGCTTTTCTGTACTCACAGTGTCGTCCCGCTCAGGGGAAATGTT
CGGCTTTGAAGAATGAGCACAGGGAAAAGTACAAACTTTCCTCGGTGATC
ATATCTGAGCCGAAAATAGCAGCTCGAAACCGTCGCAGAAGTCCTCCAGC
CCCAAGGGCCCCATTTCCCTCTCCGAAACCGCCCACGCTTCCCCCAAATA
TCAGCCCGAGCGATCCATGTCCGAATGAGGTGAAAGGATTCTGCTTCGGT
TGTCAGGGATGTCAGGGATGTCAGGACCTTATCAGCCGATGCAGGGTCTA
A
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