Ggra10885.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra10885.t1
Unique NameGgra10885.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length185
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000125_piloncontigtig00000125_pilon:358827..359625 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra10885Ggra10885Gracilaria gracilis GNS1m malegenetig00000125_pilon 358827..359625 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10885.t1Ggra10885.t1Gracilaria gracilis GNS1m malepolypeptidetig00000125_pilon 358827..359625 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10885.t1.stop1Ggra10885.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000125_pilon 358827..358829 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10885.t1.CDS1Ggra10885.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000125_pilon 358827..359021 -
Ggra10885.t1.CDS2Ggra10885.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000125_pilon 359222..359411 -
Ggra10885.t1.CDS3Ggra10885.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000125_pilon 359456..359625 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10885.t1.exon1Ggra10885.t1.exon1Gracilaria gracilis GNS1m maleexontig00000125_pilon 358827..359021 -
Ggra10885.t1.exon2Ggra10885.t1.exon2Gracilaria gracilis GNS1m maleexontig00000125_pilon 359222..359411 -
Ggra10885.t1.exon3Ggra10885.t1.exon3Gracilaria gracilis GNS1m maleexontig00000125_pilon 359456..359625 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10885.t1.intron1Ggra10885.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000125_pilon 359022..359221 -
Ggra10885.t1.intron2Ggra10885.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000125_pilon 359412..359455 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10885.t1.start1Ggra10885.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000125_pilon 359623..359625 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra10885.t1 ID=Ggra10885.t1|Name=Ggra10885.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=185bp
MVPPHWEKPRLQLQSSSQEEDTTGQDKLGNTRLEVDGTAANCGGPSGSPP
MTVEIPLYSWVKLFSGTGAVYNGQLHSGVTKSELVSECNLLGDYSTIFYQ
IPCILGDLSNNDVSIAQEVELSVCAGIGEHIVRTAEGELMGGEGLCGTAE
ENGEALGAAADEDVDADCTPELEADGVGAIDVAG*
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spliced messenger RNA

>Ggra10885.t1 ID=Ggra10885.t1|Name=Ggra10885.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=555bp|location=Sequence derived from alignment at tig00000125_pilon:358827..359625- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTGCCCCCCCATTGGGAGAAACCGAGACTGCAGCTGCAGAGTTCATC
TCAAGAAGAAGACACAACCGGCCAGGACAAGCTGGGGAATACAAGGTTGG
AGGTGGATGGGACCGCTGCAAACTGCGGAGGCCCAAGCGGATCACCCCCC
ATGACTGTCGAGATACCATTATATAGTTGGGTCAAGCTCTTCAGTGGTAC
AGGAGCTGTCTACAATGGCCAGCTTCATAGTGGTGTTACCAAGAGCGAAC
TTGTAAGTGAATGCAACCTGCTTGGAGATTACTCCACCATCTTCTACCAA
ATTCCATGTATACTCGGTGATTTGTCTAATAATGATGTTAGCATTGCGCA
AGAAGTGGAACTCAGCGTCTGCGCTGGTATCGGTGAGCACATTGTTCGAA
CAGCCGAGGGCGAGCTAATGGGTGGAGAAGGGCTTTGCGGCACTGCAGAA
GAAAATGGAGAGGCGCTTGGTGCCGCTGCGGATGAGGACGTTGACGCAGA
TTGTACTCCTGAGCTGGAGGCCGACGGAGTCGGAGCAATTGATGTAGCGG
GTTGA
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protein sequence of Ggra10885.t1

>Ggra10885.t1 ID=Ggra10885.t1|Name=Ggra10885.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=185bp
MVPPHWEKPRLQLQSSSQEEDTTGQDKLGNTRLEVDGTAANCGGPSGSPP
MTVEIPLYSWVKLFSGTGAVYNGQLHSGVTKSELVSECNLLGDYSTIFYQ
IPCILGDLSNNDVSIAQEVELSVCAGIGEHIVRTAEGELMGGEGLCGTAE
ENGEALGAAADEDVDADCTPELEADGVGAIDVAG*
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mRNA from alignment at tig00000125_pilon:358827..359625-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra10885.t1 ID=Ggra10885.t1|Name=Ggra10885.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=799bp|location=Sequence derived from alignment at tig00000125_pilon:358827..359625- (Gracilaria gracilis GNS1m male)
ATGGTGCCCCCCCATTGGGAGAAACCGAGACTGCAGCTGCAGAGTTCATC
TCAAGAAGAAGACACAACCGGCCAGGACAAGCTGGGGAATACAAGGTTGG
AGGTGGATGGGACCGCTGCAAACTGCGGAGGCCCAAGCGGATCACCCCCC
ATGACTGTCGAGATACCATTGTAACAGTAACAATATATGCCCTGTTGGAT
TGACCCACTTACAGATATAGTTGGGTCAAGCTCTTCAGTGGTACAGGAGC
TGTCTACAATGGCCAGCTTCATAGTGGTGTTACCAAGAGCGAACTTGTAA
GTGAATGCAACCTGCTTGGAGATTACTCCACCATCTTCTACCAAATTCCA
TGTATACTCGGTGATTTGTCTAATAATGATGTTAGCATTGCGCAAGAAGT
GGAAGTGACTGCTTGATTCATCGATCTGCACCATTTAAAAGCCGTCACCG
TATGGCTTCGAAGGTTGTGCGTTCATCTGTGATGAGTACGAACCCACAAC
CGCATGGACTGCAAGGTCCATACTCTCAGCAAAGCTACCCGACCTTGATG
CGGTAGCAAATTCATTCAGTTCAGGGACAGCGTTGATGTAGCTCACGATT
GCAGCTCAGCGTCTGCGCTGGTATCGGTGAGCACATTGTTCGAACAGCCG
AGGGCGAGCTAATGGGTGGAGAAGGGCTTTGCGGCACTGCAGAAGAAAAT
GGAGAGGCGCTTGGTGCCGCTGCGGATGAGGACGTTGACGCAGATTGTAC
TCCTGAGCTGGAGGCCGACGGAGTCGGAGCAATTGATGTAGCGGGTTGA
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Coding sequence (CDS) from alignment at tig00000125_pilon:358827..359625-

>Ggra10885.t1 ID=Ggra10885.t1|Name=Ggra10885.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=555bp|location=Sequence derived from alignment at tig00000125_pilon:358827..359625- (Gracilaria gracilis GNS1m male)
ATGGTGCCCCCCCATTGGGAGAAACCGAGACTGCAGCTGCAGAGTTCATC
TCAAGAAGAAGACACAACCGGCCAGGACAAGCTGGGGAATACAAGGTTGG
AGGTGGATGGGACCGCTGCAAACTGCGGAGGCCCAAGCGGATCACCCCCC
ATGACTGTCGAGATACCATTATATAGTTGGGTCAAGCTCTTCAGTGGTAC
AGGAGCTGTCTACAATGGCCAGCTTCATAGTGGTGTTACCAAGAGCGAAC
TTGTAAGTGAATGCAACCTGCTTGGAGATTACTCCACCATCTTCTACCAA
ATTCCATGTATACTCGGTGATTTGTCTAATAATGATGTTAGCATTGCGCA
AGAAGTGGAACTCAGCGTCTGCGCTGGTATCGGTGAGCACATTGTTCGAA
CAGCCGAGGGCGAGCTAATGGGTGGAGAAGGGCTTTGCGGCACTGCAGAA
GAAAATGGAGAGGCGCTTGGTGCCGCTGCGGATGAGGACGTTGACGCAGA
TTGTACTCCTGAGCTGGAGGCCGACGGAGTCGGAGCAATTGATGTAGCGG
GTTGA
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