Ggra10884.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra10884.t1
Unique NameGgra10884.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length83
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000125_piloncontigtig00000125_pilon:331362..331814 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra10884Ggra10884Gracilaria gracilis GNS1m malegenetig00000125_pilon 331362..331814 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10884.t1Ggra10884.t1Gracilaria gracilis GNS1m malepolypeptidetig00000125_pilon 331362..331814 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10884.t1.stop1Ggra10884.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000125_pilon 331362..331364 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10884.t1.CDS1Ggra10884.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000125_pilon 331362..331441 -
Ggra10884.t1.CDS2Ggra10884.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000125_pilon 331550..331569 -
Ggra10884.t1.CDS3Ggra10884.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000125_pilon 331666..331814 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10884.t1.exon1Ggra10884.t1.exon1Gracilaria gracilis GNS1m maleexontig00000125_pilon 331362..331441 -
Ggra10884.t1.exon2Ggra10884.t1.exon2Gracilaria gracilis GNS1m maleexontig00000125_pilon 331550..331569 -
Ggra10884.t1.exon3Ggra10884.t1.exon3Gracilaria gracilis GNS1m maleexontig00000125_pilon 331666..331814 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10884.t1.intron1Ggra10884.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000125_pilon 331442..331549 -
Ggra10884.t1.intron2Ggra10884.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000125_pilon 331570..331665 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10884.t1.start1Ggra10884.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000125_pilon 331812..331814 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra10884.t1 ID=Ggra10884.t1|Name=Ggra10884.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=83bp
MSSSGNASSSRGNTSSSGGNTSSSRENSSSAPAGSGGTGPSRRFCPYCGD
SFGYPTREYEKHLMICTKVNSPQKVKPPKKKK*
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spliced messenger RNA

>Ggra10884.t1 ID=Ggra10884.t1|Name=Ggra10884.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=249bp|location=Sequence derived from alignment at tig00000125_pilon:331362..331814- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGCAGCTCAGGTAACGCAAGTTCTAGCAGAGGGAACACAAGTTCTAG
CGGAGGGAACACAAGTTCTAGCAGAGAAAACTCAAGCTCAGCACCTGCGG
GTTCTGGTGGGACCGGGCCTTCGAGACGCTTTTGCCCTTACTGCGGAGAT
TCATTTGGCTATCCGACTCGTGAATACGAAAAGCACTTGATGATATGCAC
GAAGGTGAACTCTCCTCAGAAAGTCAAACCTCCCAAGAAGAAGAAATGA
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protein sequence of Ggra10884.t1

>Ggra10884.t1 ID=Ggra10884.t1|Name=Ggra10884.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=83bp
MSSSGNASSSRGNTSSSGGNTSSSRENSSSAPAGSGGTGPSRRFCPYCGD
SFGYPTREYEKHLMICTKVNSPQKVKPPKKKK*
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mRNA from alignment at tig00000125_pilon:331362..331814-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra10884.t1 ID=Ggra10884.t1|Name=Ggra10884.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=453bp|location=Sequence derived from alignment at tig00000125_pilon:331362..331814- (Gracilaria gracilis GNS1m male)
ATGAGCAGCTCAGGTAACGCAAGTTCTAGCAGAGGGAACACAAGTTCTAG
CGGAGGGAACACAAGTTCTAGCAGAGAAAACTCAAGCTCAGCACCTGCGG
GTTCTGGTGGGACCGGGCCTTCGAGACGCTTTTGCCCTTACTGCGGAGAG
TACGATTTGCATTCGAGCGCCACCTGAACTTCGGATATACGTACTGCGAC
ATGTTTGTATCGAATATCTAACTTTATAACGTTCTTCTGCTGTAGTTCAT
TTGGCTATCCGACTCGTAAGTCTTTTTTCAACCATGCGTAGAGCATAGAG
GTAAGGTTTAGTTCGAAGTAAAAAAGCATTGAACTAACGGAGTTTGGGCT
GTCTATTTGTCTGAGCATTGCAGGTGAATACGAAAAGCACTTGATGATAT
GCACGAAGGTGAACTCTCCTCAGAAAGTCAAACCTCCCAAGAAGAAGAAA
TGA
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Coding sequence (CDS) from alignment at tig00000125_pilon:331362..331814-

>Ggra10884.t1 ID=Ggra10884.t1|Name=Ggra10884.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=249bp|location=Sequence derived from alignment at tig00000125_pilon:331362..331814- (Gracilaria gracilis GNS1m male)
ATGAGCAGCTCAGGTAACGCAAGTTCTAGCAGAGGGAACACAAGTTCTAG
CGGAGGGAACACAAGTTCTAGCAGAGAAAACTCAAGCTCAGCACCTGCGG
GTTCTGGTGGGACCGGGCCTTCGAGACGCTTTTGCCCTTACTGCGGAGAT
TCATTTGGCTATCCGACTCGTGAATACGAAAAGCACTTGATGATATGCAC
GAAGGTGAACTCTCCTCAGAAAGTCAAACCTCCCAAGAAGAAGAAATGA
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