Ggra10883.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra10883.t1
Unique NameGgra10883.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length213
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000125_piloncontigtig00000125_pilon:313952..314590 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra10883Ggra10883Gracilaria gracilis GNS1m malegenetig00000125_pilon 313952..314590 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10883.t1.stop1Ggra10883.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000125_pilon 313952..313954 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10883.t1.CDS1Ggra10883.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000125_pilon 313952..314590 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10883.t1.exon1Ggra10883.t1.exon1Gracilaria gracilis GNS1m maleexontig00000125_pilon 313952..314590 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10883.t1.start1Ggra10883.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000125_pilon 314588..314590 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10883.t1Ggra10883.t1Gracilaria gracilis GNS1m malepolypeptidetig00000125_pilon 313952..314590 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra10883.t1 ID=Ggra10883.t1|Name=Ggra10883.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=213bp
MTLTTATSHPISTAVAPTSLTASNGVLSQSALLSSSPVSQHALPSGLGAP
STPASAIATPRPKRGRRKKRPDLTDEERKALRALQNRAATRRSRERSRLR
AAELKNQLQRSLQHNQVLQRERDTLLYCMKQVRVKNSVPRAPPKRPNPMS
LSVILNKHDQPIPDRHSYVATPPSKMSLNVAATHASPLSVTSAAYTPAVN
PAFRKAYYSRTP*
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spliced messenger RNA

>Ggra10883.t1 ID=Ggra10883.t1|Name=Ggra10883.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=639bp|location=Sequence derived from alignment at tig00000125_pilon:313952..314590- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACTCTAACAACCGCCACCAGCCACCCAATTTCCACCGCCGTCGCCCC
AACCTCTCTGACCGCTTCCAACGGTGTCCTTTCCCAGTCGGCGCTCCTTT
CTTCCTCGCCCGTATCGCAGCATGCGCTGCCCTCAGGTCTGGGCGCTCCG
TCGACGCCGGCAAGTGCAATCGCCACGCCACGACCGAAGCGCGGTCGCAG
AAAGAAGCGTCCGGATCTCACCGACGAGGAGCGAAAAGCGCTTCGTGCTC
TTCAGAACCGCGCCGCAACTCGCCGTTCACGTGAACGCAGCCGACTGCGT
GCTGCGGAGCTCAAGAACCAGTTGCAGCGATCGTTGCAACACAATCAAGT
TTTGCAACGTGAGAGAGATACGCTGTTGTATTGTATGAAGCAGGTCCGTG
TGAAGAACAGTGTGCCGCGAGCACCTCCGAAGCGACCGAACCCCATGAGT
CTTTCCGTCATTCTTAACAAACATGATCAACCAATACCGGATCGCCACTC
ATATGTGGCAACACCGCCTTCGAAGATGTCCCTGAACGTAGCTGCAACGC
ATGCCTCACCGCTTTCGGTTACTTCTGCCGCCTACACGCCGGCCGTCAAC
CCCGCCTTTCGCAAGGCCTATTACTCGCGAACTCCCTGA
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protein sequence of Ggra10883.t1

>Ggra10883.t1 ID=Ggra10883.t1|Name=Ggra10883.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=213bp
MTLTTATSHPISTAVAPTSLTASNGVLSQSALLSSSPVSQHALPSGLGAP
STPASAIATPRPKRGRRKKRPDLTDEERKALRALQNRAATRRSRERSRLR
AAELKNQLQRSLQHNQVLQRERDTLLYCMKQVRVKNSVPRAPPKRPNPMS
LSVILNKHDQPIPDRHSYVATPPSKMSLNVAATHASPLSVTSAAYTPAVN
PAFRKAYYSRTP*
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mRNA from alignment at tig00000125_pilon:313952..314590-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra10883.t1 ID=Ggra10883.t1|Name=Ggra10883.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=639bp|location=Sequence derived from alignment at tig00000125_pilon:313952..314590- (Gracilaria gracilis GNS1m male)
ATGACTCTAACAACCGCCACCAGCCACCCAATTTCCACCGCCGTCGCCCC
AACCTCTCTGACCGCTTCCAACGGTGTCCTTTCCCAGTCGGCGCTCCTTT
CTTCCTCGCCCGTATCGCAGCATGCGCTGCCCTCAGGTCTGGGCGCTCCG
TCGACGCCGGCAAGTGCAATCGCCACGCCACGACCGAAGCGCGGTCGCAG
AAAGAAGCGTCCGGATCTCACCGACGAGGAGCGAAAAGCGCTTCGTGCTC
TTCAGAACCGCGCCGCAACTCGCCGTTCACGTGAACGCAGCCGACTGCGT
GCTGCGGAGCTCAAGAACCAGTTGCAGCGATCGTTGCAACACAATCAAGT
TTTGCAACGTGAGAGAGATACGCTGTTGTATTGTATGAAGCAGGTCCGTG
TGAAGAACAGTGTGCCGCGAGCACCTCCGAAGCGACCGAACCCCATGAGT
CTTTCCGTCATTCTTAACAAACATGATCAACCAATACCGGATCGCCACTC
ATATGTGGCAACACCGCCTTCGAAGATGTCCCTGAACGTAGCTGCAACGC
ATGCCTCACCGCTTTCGGTTACTTCTGCCGCCTACACGCCGGCCGTCAAC
CCCGCCTTTCGCAAGGCCTATTACTCGCGAACTCCCTGA
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Coding sequence (CDS) from alignment at tig00000125_pilon:313952..314590-

>Ggra10883.t1 ID=Ggra10883.t1|Name=Ggra10883.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=639bp|location=Sequence derived from alignment at tig00000125_pilon:313952..314590- (Gracilaria gracilis GNS1m male)
ATGACTCTAACAACCGCCACCAGCCACCCAATTTCCACCGCCGTCGCCCC
AACCTCTCTGACCGCTTCCAACGGTGTCCTTTCCCAGTCGGCGCTCCTTT
CTTCCTCGCCCGTATCGCAGCATGCGCTGCCCTCAGGTCTGGGCGCTCCG
TCGACGCCGGCAAGTGCAATCGCCACGCCACGACCGAAGCGCGGTCGCAG
AAAGAAGCGTCCGGATCTCACCGACGAGGAGCGAAAAGCGCTTCGTGCTC
TTCAGAACCGCGCCGCAACTCGCCGTTCACGTGAACGCAGCCGACTGCGT
GCTGCGGAGCTCAAGAACCAGTTGCAGCGATCGTTGCAACACAATCAAGT
TTTGCAACGTGAGAGAGATACGCTGTTGTATTGTATGAAGCAGGTCCGTG
TGAAGAACAGTGTGCCGCGAGCACCTCCGAAGCGACCGAACCCCATGAGT
CTTTCCGTCATTCTTAACAAACATGATCAACCAATACCGGATCGCCACTC
ATATGTGGCAACACCGCCTTCGAAGATGTCCCTGAACGTAGCTGCAACGC
ATGCCTCACCGCTTTCGGTTACTTCTGCCGCCTACACGCCGGCCGTCAAC
CCCGCCTTTCGCAAGGCCTATTACTCGCGAACTCCCTGA
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