Ggra10881.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra10881.t1
Unique NameGgra10881.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length213
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000125_piloncontigtig00000125_pilon:289101..289833 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog36331.EPrPI00000020200
PFAMsGST_C_3,GST_N
Max annot lvl121069|Pythiales
Evalue3.7e-33
EggNOG OGsKOG1695@1|root,KOG1695@2759|Eukaryota,1MFV7@121069|Pythiales
DescriptionGlutathione S-transferase. Source PGD
COG categoryO
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra10881Ggra10881Gracilaria gracilis GNS1m malegenetig00000125_pilon 289101..289833 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10881.t1Ggra10881.t1Gracilaria gracilis GNS1m malepolypeptidetig00000125_pilon 289101..289833 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10881.t1.stop1Ggra10881.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000125_pilon 289101..289103 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10881.t1.CDS1Ggra10881.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000125_pilon 289101..289703 -
Ggra10881.t1.CDS2Ggra10881.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000125_pilon 289798..289833 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10881.t1.exon1Ggra10881.t1.exon1Gracilaria gracilis GNS1m maleexontig00000125_pilon 289101..289703 -
Ggra10881.t1.exon2Ggra10881.t1.exon2Gracilaria gracilis GNS1m maleexontig00000125_pilon 289798..289833 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10881.t1.intron1Ggra10881.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000125_pilon 289704..289797 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10881.t1.start1Ggra10881.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000125_pilon 289831..289833 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra10881.t1 ID=Ggra10881.t1|Name=Ggra10881.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=213bp
MSSLKLTYFGYRARGEPIRLALSIGKKQFVDERIDPSQWNELAKKTPYGS
LPTFQVDGQLFAQGKAILRYVGVITDTYPSDARKALCVDEVLDTVDDIVN
VLFQSFSGKHEMKQAREMAVKQDFPRYLGGLQRRMELFGAGPFMTGDKVS
IADWYLCTFMNAIVYGNVDYVCAESVEGYEKIMEACRAVMDIPEVVEWYK
QHPMEKKVPNMD*
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spliced messenger RNA

>Ggra10881.t1 ID=Ggra10881.t1|Name=Ggra10881.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=639bp|location=Sequence derived from alignment at tig00000125_pilon:289101..289833- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCGTCACTGAAGCTGACCTACTTTGGATATAGAGCAAGAGGAGAGCC
TATTCGTCTCGCTCTGTCCATCGGTAAGAAACAGTTTGTAGACGAAAGAA
TTGACCCTAGCCAATGGAACGAATTGGCCAAAAAGACCCCGTATGGTAGT
CTACCAACATTCCAAGTAGATGGACAGCTGTTCGCTCAAGGAAAGGCTAT
TTTACGATACGTGGGAGTTATCACTGACACATACCCTTCAGACGCCCGGA
AAGCACTGTGTGTAGACGAGGTCTTGGATACAGTGGACGACATTGTCAAC
GTCTTATTCCAAAGCTTTTCTGGCAAGCACGAGATGAAACAAGCACGTGA
AATGGCAGTCAAGCAAGATTTTCCTCGATACCTGGGAGGGCTGCAACGAA
GAATGGAGCTATTTGGAGCAGGACCTTTTATGACGGGGGATAAGGTGAGT
ATCGCTGATTGGTACCTATGCACCTTCATGAACGCCATTGTGTACGGCAA
TGTTGACTATGTTTGCGCGGAGAGTGTGGAAGGGTACGAGAAGATTATGG
AAGCGTGCAGAGCAGTTATGGATATTCCGGAGGTGGTGGAATGGTATAAA
CAGCATCCGATGGAGAAAAAGGTTCCTAACATGGACTAA
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protein sequence of Ggra10881.t1

>Ggra10881.t1 ID=Ggra10881.t1|Name=Ggra10881.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=213bp
MSSLKLTYFGYRARGEPIRLALSIGKKQFVDERIDPSQWNELAKKTPYGS
LPTFQVDGQLFAQGKAILRYVGVITDTYPSDARKALCVDEVLDTVDDIVN
VLFQSFSGKHEMKQAREMAVKQDFPRYLGGLQRRMELFGAGPFMTGDKVS
IADWYLCTFMNAIVYGNVDYVCAESVEGYEKIMEACRAVMDIPEVVEWYK
QHPMEKKVPNMD*
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mRNA from alignment at tig00000125_pilon:289101..289833-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra10881.t1 ID=Ggra10881.t1|Name=Ggra10881.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=733bp|location=Sequence derived from alignment at tig00000125_pilon:289101..289833- (Gracilaria gracilis GNS1m male)
ATGTCGTCACTGAAGCTGACCTACTTTGGATATAGAGTACGTCTGGTCGC
TTGGCACTCTCTCTACGCTTGAAGAGAAAACATACTAACCTTAACGTTTT
CGAATCCTTTATCGGTGTCATGTTCCAAAGGCAAGAGGAGAGCCTATTCG
TCTCGCTCTGTCCATCGGTAAGAAACAGTTTGTAGACGAAAGAATTGACC
CTAGCCAATGGAACGAATTGGCCAAAAAGACCCCGTATGGTAGTCTACCA
ACATTCCAAGTAGATGGACAGCTGTTCGCTCAAGGAAAGGCTATTTTACG
ATACGTGGGAGTTATCACTGACACATACCCTTCAGACGCCCGGAAAGCAC
TGTGTGTAGACGAGGTCTTGGATACAGTGGACGACATTGTCAACGTCTTA
TTCCAAAGCTTTTCTGGCAAGCACGAGATGAAACAAGCACGTGAAATGGC
AGTCAAGCAAGATTTTCCTCGATACCTGGGAGGGCTGCAACGAAGAATGG
AGCTATTTGGAGCAGGACCTTTTATGACGGGGGATAAGGTGAGTATCGCT
GATTGGTACCTATGCACCTTCATGAACGCCATTGTGTACGGCAATGTTGA
CTATGTTTGCGCGGAGAGTGTGGAAGGGTACGAGAAGATTATGGAAGCGT
GCAGAGCAGTTATGGATATTCCGGAGGTGGTGGAATGGTATAAACAGCAT
CCGATGGAGAAAAAGGTTCCTAACATGGACTAA
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Coding sequence (CDS) from alignment at tig00000125_pilon:289101..289833-

>Ggra10881.t1 ID=Ggra10881.t1|Name=Ggra10881.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=639bp|location=Sequence derived from alignment at tig00000125_pilon:289101..289833- (Gracilaria gracilis GNS1m male)
ATGTCGTCACTGAAGCTGACCTACTTTGGATATAGAGCAAGAGGAGAGCC
TATTCGTCTCGCTCTGTCCATCGGTAAGAAACAGTTTGTAGACGAAAGAA
TTGACCCTAGCCAATGGAACGAATTGGCCAAAAAGACCCCGTATGGTAGT
CTACCAACATTCCAAGTAGATGGACAGCTGTTCGCTCAAGGAAAGGCTAT
TTTACGATACGTGGGAGTTATCACTGACACATACCCTTCAGACGCCCGGA
AAGCACTGTGTGTAGACGAGGTCTTGGATACAGTGGACGACATTGTCAAC
GTCTTATTCCAAAGCTTTTCTGGCAAGCACGAGATGAAACAAGCACGTGA
AATGGCAGTCAAGCAAGATTTTCCTCGATACCTGGGAGGGCTGCAACGAA
GAATGGAGCTATTTGGAGCAGGACCTTTTATGACGGGGGATAAGGTGAGT
ATCGCTGATTGGTACCTATGCACCTTCATGAACGCCATTGTGTACGGCAA
TGTTGACTATGTTTGCGCGGAGAGTGTGGAAGGGTACGAGAAGATTATGG
AAGCGTGCAGAGCAGTTATGGATATTCCGGAGGTGGTGGAATGGTATAAA
CAGCATCCGATGGAGAAAAAGGTTCCTAACATGGACTAA
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