Ggra1088.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra1088.t1
Unique NameGgra1088.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length352
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000185_piloncontigtig00000185_pilon:25898..27196 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog1056512.D515_03961
PFAMsLactonase
Max annot lvl1224|Proteobacteria
Evalue2.65e-11
EggNOG OGsCOG2706@1|root,COG2706@2|Bacteria,1NG69@1224|Proteobacteria
DescriptionLactonase, 7-bladed beta-propeller
COG categoryG
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1088Ggra1088Gracilaria gracilis GNS1m malegenetig00000185_pilon 25898..27196 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1088.t1Ggra1088.t1Gracilaria gracilis GNS1m malepolypeptidetig00000185_pilon 25898..27196 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1088.t1.start1Ggra1088.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000185_pilon 25898..25900 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1088.t1.CDS1Ggra1088.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000185_pilon 25898..26211 +
Ggra1088.t1.CDS2Ggra1088.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000185_pilon 26455..27196 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1088.t1.exon1Ggra1088.t1.exon1Gracilaria gracilis GNS1m maleexontig00000185_pilon 25898..26211 +
Ggra1088.t1.exon2Ggra1088.t1.exon2Gracilaria gracilis GNS1m maleexontig00000185_pilon 26455..27196 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1088.t1.intron1Ggra1088.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000185_pilon 26212..26454 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1088.t1.stop1Ggra1088.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000185_pilon 27194..27196 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra1088.t1 ID=Ggra1088.t1|Name=Ggra1088.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=352bp
MAMARFSLFITVLLSTCLLSWASQPRLNLDFRGRSIKPRRPSEFVGGVYA
MSNNVTENTMVVYARRPDGTLQLLDPALKTGGKGAILNLGSGFDPLFSAF
SVVITLIPIPRSRRLLTFRPSAIQFSPDRRSLVVSNLFAGRNAIEVGSVQ
EIVVFSVHRAAMLSRTPVSIAASTELGNAEGRNLPGAIGFEIVKSGGVQY
LVVPEVRAIAGADGMAPLDQASSVSTWMLDARSQIVPVQLDVPVGSSVTS
GQMDSCWIIFSDDSSNFWVANTPSNSTSVFSFDKGISTLEEQVGASGAFP
IDLWISRDSRYLYQLFGGSVGVFEIGAGGSLTQLQNPMNVPDLNPQGIVA
F*
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spliced messenger RNA

>Ggra1088.t1 ID=Ggra1088.t1|Name=Ggra1088.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1056bp|location=Sequence derived from alignment at tig00000185_pilon:25898..27196+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCATGGCTCGTTTTTCATTGTTCATCACCGTTTTGCTATCCACTTG
CCTGCTTTCATGGGCGTCCCAGCCGCGCCTCAACCTCGACTTCCGCGGGA
GGTCAATCAAACCACGAAGACCCTCCGAATTCGTGGGCGGTGTGTATGCC
ATGTCCAATAATGTTACTGAGAATACAATGGTCGTTTACGCTCGTCGACC
GGACGGTACCCTTCAGTTGCTGGATCCCGCTCTGAAAACTGGAGGAAAAG
GCGCTATTCTCAATCTCGGCTCTGGATTCGACCCGCTTTTTTCAGCTTTC
TCAGTCGTTATCACACTCATTCCCATCCCACGCAGTCGCCGATTGCTCAC
TTTCCGCCCTTCAGCTATCCAGTTTTCGCCTGATCGCCGTTCTTTGGTCG
TTTCTAACTTGTTTGCTGGCCGAAACGCTATTGAAGTCGGCAGCGTTCAA
GAAATCGTGGTCTTCAGTGTCCATCGAGCGGCCATGCTCAGCCGCACACC
AGTGTCCATTGCAGCATCAACGGAACTAGGCAACGCCGAAGGTCGTAATC
TTCCGGGCGCAATTGGTTTTGAAATCGTAAAGTCCGGAGGCGTGCAATAC
TTGGTTGTGCCGgaagtacgcgctatagctggtgccgatggcatggcgcc
ccttgaccaagcTTCGTCTGTCTCTACCTGGATGCTTGACGCCCGAAGTC
AAATTGTACCAGTGCAGCTTGACGTCCCGGTGGGGTCGTCAGTCACTTCT
GGCCAAATGGACTCTTGCTGGATTATCTTTTCCGATGATTCGAGTAACTT
CTGGGTAGCCAATACCCCCTCAAACTCCACTTCTGTGTTCTCATTTGATA
AGGGGATTTCTACTCTTGAGGAACAAGTTGGCGCAAGTGGAGCGTTCCCC
ATTGATCTGTGGATATCCAGGGATAGTAGGTACTTGTATCAACTATTTGG
TGGATCTGTTGGGGTTTTCGAGATTGGAGCGGGTGGGAGCCTCACTCAAC
TCCAGAATCCGATGAATGTTCCTGATCTGAATCCTCAAGGAATCGTTGCT
TTTTAA
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protein sequence of Ggra1088.t1

>Ggra1088.t1 ID=Ggra1088.t1|Name=Ggra1088.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=352bp
MAMARFSLFITVLLSTCLLSWASQPRLNLDFRGRSIKPRRPSEFVGGVYA
MSNNVTENTMVVYARRPDGTLQLLDPALKTGGKGAILNLGSGFDPLFSAF
SVVITLIPIPRSRRLLTFRPSAIQFSPDRRSLVVSNLFAGRNAIEVGSVQ
EIVVFSVHRAAMLSRTPVSIAASTELGNAEGRNLPGAIGFEIVKSGGVQY
LVVPEVRAIAGADGMAPLDQASSVSTWMLDARSQIVPVQLDVPVGSSVTS
GQMDSCWIIFSDDSSNFWVANTPSNSTSVFSFDKGISTLEEQVGASGAFP
IDLWISRDSRYLYQLFGGSVGVFEIGAGGSLTQLQNPMNVPDLNPQGIVA
F*
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mRNA from alignment at tig00000185_pilon:25898..27196+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra1088.t1 ID=Ggra1088.t1|Name=Ggra1088.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1299bp|location=Sequence derived from alignment at tig00000185_pilon:25898..27196+ (Gracilaria gracilis GNS1m male)
ATGGCCATGGCTCGTTTTTCATTGTTCATCACCGTTTTGCTATCCACTTG
CCTGCTTTCATGGGCGTCCCAGCCGCGCCTCAACCTCGACTTCCGCGGGA
GGTCAATCAAACCACGAAGACCCTCCGAATTCGTGGGCGGTGTGTATGCC
ATGTCCAATAATGTTACTGAGAATACAATGGTCGTTTACGCTCGTCGACC
GGACGGTACCCTTCAGTTGCTGGATCCCGCTCTGAAAACTGGAGGAAAAG
GCGCTATTCTCAATCTCGGCTCTGGATTCGACCCGCTTTTTTCAGCTTTC
TCAGTCGTTATCACGTCTGACaacagattcgtactggctgtcaacgcggg
aagcagcactgtttcagtgttcagagtcctcccagacttttccctccttc
tcgtccatgtacagcccgttcctgggtttggaccgaacaccattgcagtt
tcaggaaatatcgtctacgtcgccagctctgatgcagatggtgaatttga
cgatgttttctctcagaagggagCCCTCTTTGGATTTGTTTTGTCTTCTT
CTGGTAGACTCATTCCCATCCCACGCAGTCGCCGATTGCTCACTTTCCGC
CCTTCAGCTATCCAGTTTTCGCCTGATCGCCGTTCTTTGGTCGTTTCTAA
CTTGTTTGCTGGCCGAAACGCTATTGAAGTCGGCAGCGTTCAAGAAATCG
TGGTCTTCAGTGTCCATCGAGCGGCCATGCTCAGCCGCACACCAGTGTCC
ATTGCAGCATCAACGGAACTAGGCAACGCCGAAGGTCGTAATCTTCCGGG
CGCAATTGGTTTTGAAATCGTAAAGTCCGGAGGCGTGCAATACTTGGTTG
TGCCGgaagtacgcgctatagctggtgccgatggcatggcgccccttgac
caagcTTCGTCTGTCTCTACCTGGATGCTTGACGCCCGAAGTCAAATTGT
ACCAGTGCAGCTTGACGTCCCGGTGGGGTCGTCAGTCACTTCTGGCCAAA
TGGACTCTTGCTGGATTATCTTTTCCGATGATTCGAGTAACTTCTGGGTA
GCCAATACCCCCTCAAACTCCACTTCTGTGTTCTCATTTGATAAGGGGAT
TTCTACTCTTGAGGAACAAGTTGGCGCAAGTGGAGCGTTCCCCATTGATC
TGTGGATATCCAGGGATAGTAGGTACTTGTATCAACTATTTGGTGGATCT
GTTGGGGTTTTCGAGATTGGAGCGGGTGGGAGCCTCACTCAACTCCAGAA
TCCGATGAATGTTCCTGATCTGAATCCTCAAGGAATCGTTGCTTTTTAA
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Coding sequence (CDS) from alignment at tig00000185_pilon:25898..27196+

>Ggra1088.t1 ID=Ggra1088.t1|Name=Ggra1088.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1056bp|location=Sequence derived from alignment at tig00000185_pilon:25898..27196+ (Gracilaria gracilis GNS1m male)
ATGGCCATGGCTCGTTTTTCATTGTTCATCACCGTTTTGCTATCCACTTG
CCTGCTTTCATGGGCGTCCCAGCCGCGCCTCAACCTCGACTTCCGCGGGA
GGTCAATCAAACCACGAAGACCCTCCGAATTCGTGGGCGGTGTGTATGCC
ATGTCCAATAATGTTACTGAGAATACAATGGTCGTTTACGCTCGTCGACC
GGACGGTACCCTTCAGTTGCTGGATCCCGCTCTGAAAACTGGAGGAAAAG
GCGCTATTCTCAATCTCGGCTCTGGATTCGACCCGCTTTTTTCAGCTTTC
TCAGTCGTTATCACACTCATTCCCATCCCACGCAGTCGCCGATTGCTCAC
TTTCCGCCCTTCAGCTATCCAGTTTTCGCCTGATCGCCGTTCTTTGGTCG
TTTCTAACTTGTTTGCTGGCCGAAACGCTATTGAAGTCGGCAGCGTTCAA
GAAATCGTGGTCTTCAGTGTCCATCGAGCGGCCATGCTCAGCCGCACACC
AGTGTCCATTGCAGCATCAACGGAACTAGGCAACGCCGAAGGTCGTAATC
TTCCGGGCGCAATTGGTTTTGAAATCGTAAAGTCCGGAGGCGTGCAATAC
TTGGTTGTGCCGgaagtacgcgctatagctggtgccgatggcatggcgcc
ccttgaccaagcTTCGTCTGTCTCTACCTGGATGCTTGACGCCCGAAGTC
AAATTGTACCAGTGCAGCTTGACGTCCCGGTGGGGTCGTCAGTCACTTCT
GGCCAAATGGACTCTTGCTGGATTATCTTTTCCGATGATTCGAGTAACTT
CTGGGTAGCCAATACCCCCTCAAACTCCACTTCTGTGTTCTCATTTGATA
AGGGGATTTCTACTCTTGAGGAACAAGTTGGCGCAAGTGGAGCGTTCCCC
ATTGATCTGTGGATATCCAGGGATAGTAGGTACTTGTATCAACTATTTGG
TGGATCTGTTGGGGTTTTCGAGATTGGAGCGGGTGGGAGCCTCACTCAAC
TCCAGAATCCGATGAATGTTCCTGATCTGAATCCTCAAGGAATCGTTGCT
TTTTAA
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