Ggra10879.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra10879.t1
Unique NameGgra10879.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length303
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000125_piloncontigtig00000125_pilon:281251..282159 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog55529.EKX38418
Preferred nameSTX7
PFAMsSNARE,Syntaxin_2
Max annot lvl2759|Eukaryota
KEGG rclassRC00004,RC00012
KEGG koko:K01067,ko:K08455,ko:K08488,ko:K13216,ko:K13813,ko:K21155
KEGG ReactionR00227
KEGG Pathwayko00620,ko04130,ko04138,ko04145,map00620,map04130,map04138,map04145
GOsGO:0000011,GO:0000045,GO:0000149,GO:0000322,GO:0000323,GO:0000324,GO:0000329,GO:0000407,GO:0001505,GO:0001772,GO:0001910,GO:0001912,GO:0001914,GO:0001916,GO:0002165,GO:0002682,GO:0002684,GO:0002697,GO:0002699,GO:0002703,GO:0002705,GO:0002706,GO:0002708,GO:0002709,GO:0002711,GO:0002819,GO:0002821,GO:0002822,GO:0002824,GO:0003674,GO:0005484,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005764,GO:0005765,GO:0005766,GO:0005768,GO:0005769,GO:0005770,GO:0005773,GO:0005774,GO:0005794,GO:0005886,GO:0006810,GO:0006836,GO:0006869,GO:0006886,GO:0006887,GO:0006892,GO:0006896,GO:0006904,GO:0006906,GO:0006914,GO:0006996,GO:0007033,GO:0007034,GO:0007041,GO:0007154,GO:0007163,GO:0007267,GO:0007268,GO:0007269,GO:0007275,GO:0008021,GO:0008104,GO:0008150,GO:0008152,GO:0008200,GO:0008285,GO:0008333,GO:0009056,GO:0009791,GO:0009987,GO:0010008,GO:0010876,GO:0012505,GO:0012506,GO:0015031,GO:0015833,GO:0015850,GO:0015918,GO:0016020,GO:0016021,GO:0016043,GO:0016050,GO:0016079,GO:0016081,GO:0016192,GO:0016236,GO:0016237,GO:0016247,GO:0016248,GO:0017081,GO:0017156,GO:0019869,GO:0019905,GO:0022406,GO:0022411,GO:0022607,GO:0023052,GO:0023061,GO:0030100,GO:0030133,GO:0030139,GO:0030141,GO:0030285,GO:0030301,GO:0030424,GO:0030658,GO:0030659,GO:0030672,GO:0031090,GO:0031201,GO:0031224,GO:0031300,GO:0031301,GO:0031341,GO:0031343,GO:0031410,GO:0031647,GO:0031902,GO:0031982,GO:0032258,GO:0032501,GO:0032502,GO:0032879,GO:0032880,GO:0032940,GO:0032984,GO:0032991,GO:0033036,GO:0033267,GO:0033344,GO:0033365,GO:0034058,GO:0034613,GO:0034727,GO:0035073,GO:0035088,GO:0035210,GO:0035264,GO:0040007,GO:0042127,GO:0042144,GO:0042582,GO:0042886,GO:0042995,GO:0043005,GO:0043195,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043679,GO:0043933,GO:0044085,GO:0044237,GO:0044248,GO:0044306,GO:0044422,GO:0044424,GO:0044425,GO:0044433,GO:0044437,GO:0044440,GO:0044444,GO:0044446,GO:0044456,GO:0044459,GO:0044463,GO:0044464,GO:0044804,GO:0044877,GO:0045055,GO:0045121,GO:0045184,GO:0045202,GO:0045335,GO:0045807,GO:0046903,GO:0046907,GO:0048193,GO:0048227,GO:0048278,GO:0048284,GO:0048308,GO:0048471,GO:0048489,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0048589,GO:0048856,GO:0050776,GO:0050778,GO:0050789,GO:0050794,GO:0050821,GO:0051049,GO:0051050,GO:0051128,GO:0051130,GO:0051179,GO:0051234,GO:0051469,GO:0051640,GO:0051641,GO:0051648,GO:0051649,GO:0051650,GO:0051656,GO:0055037,GO:0060341,GO:0060627,GO:0061024,GO:0061025,GO:0061245,GO:0061919,GO:0065007,GO:0065008,GO:0065009,GO:0070382,GO:0070727,GO:0070820,GO:0070925,GO:0071702,GO:0071705,GO:0071840,GO:0071944,GO:0072665,GO:0090174,GO:0097352,GO:0097458,GO:0097479,GO:0097480,GO:0097576,GO:0097708,GO:0098563,GO:0098588,GO:0098589,GO:0098772,GO:0098793,GO:0098794,GO:0098796,GO:0098805,GO:0098837,GO:0098845,GO:0098852,GO:0098857,GO:0098916,GO:0099003,GO:0099106,GO:0099501,GO:0099503,GO:0099504,GO:0099536,GO:0099537,GO:0099643,GO:0120025,GO:0120038,GO:0140029,GO:0140056,GO:0150034,GO:1902683,GO:1902685,GO:1903076,GO:1903827,GO:1904375,GO:1905037,GO:1905475
Evalue3.33e-06
EggNOG OGsCOG5325@1|root,KOG0811@2759|Eukaryota
EC3.1.2.1
DescriptionSNAP receptor activity
COG categoryU
BRITEko00000,ko00001,ko01000,ko01009,ko03041,ko04030,ko04131,ko04147
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra10879Ggra10879Gracilaria gracilis GNS1m malegenetig00000125_pilon 281251..282159 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10879.t1.stop1Ggra10879.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000125_pilon 281251..281253 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10879.t1.CDS1Ggra10879.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000125_pilon 281251..282159 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10879.t1.exon1Ggra10879.t1.exon1Gracilaria gracilis GNS1m maleexontig00000125_pilon 281251..282159 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10879.t1.start1Ggra10879.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000125_pilon 282157..282159 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10879.t1Ggra10879.t1Gracilaria gracilis GNS1m malepolypeptidetig00000125_pilon 281251..282159 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra10879.t1 ID=Ggra10879.t1|Name=Ggra10879.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=303bp
MSFGDAAPTLAAADAQSAPAIGELQRLLKPLAANNAALRHTTKALLRARA
RAAVAPSSSPPPSPSPLPSPSPLPSPSPPPDLKRVRALREQNRHIARAAA
ALVSAIDTRLAAASAPVAQRAAAAKRQFQLHLDDFSDALQHSIRAEKLFV
DSVHDAQAERRDRLQKENEAALQQEREALRIASEADPLLRSAQRTQRERA
TLRELSSNQSLAHETNQVLTEVQSSIDDVNTIFKDLAVMVGDQSSQVEYV
EVAVADSTQNVQRAHRELQKTKKRHERNKRFFFASLITVALVVAVLLIIL
LS*
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spliced messenger RNA

>Ggra10879.t1 ID=Ggra10879.t1|Name=Ggra10879.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=909bp|location=Sequence derived from alignment at tig00000125_pilon:281251..282159- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCGTTCGGCGACGCGGCGCCCACGCTGGCCGCCGCCGACGCCCAATC
CGCGCCCGCCATCGGCGAGCTGCAGCGCCTGCTCAAACCGCTCGCCGCCA
ACAACGCCGCGCTGCGCCACACCACCAAGGCGCTGCTGCGCGCGCGCGCG
CGCGCCGCCGTCGCGCCGTCGTCGTCGCCGCCGCCGTCTCCGTCGCCGCT
GCCGTCGCCGTCGCCGCTGCCGTCGCCGTCGCCGCCGCCGGACCTCAAGC
GCGTGCGCGCGCTGCGCGAGCAGAACCGTCACATTGCGCGCGCGGCCGCC
GCGCTGGTGTCCGCCATTGACACGCGGCTGGCGGCCGCTTCCGCGCCCGT
CGCGCAGAGGGCGGCCGCCGCCAAGCGCCAGTTTCAGCTCCACTTGGACG
ACTTTTCCGACGCCTTGCAGCACAGCATTCGCGCGGAGAAGCTGTTCGTC
GACTCCGTGCACGACGCGCAGGCGGAGCGGCGCGACAGGCTGCAGAAGGA
GAATGAGGCCGCTTTGCAGCAGGAGCGCGAGGCGCTGCGAATCGCGTCCG
AGGCCGACCCGCTGCTGCGTAGCGCGCAACGCACGCAGAGGGAACGCGCT
ACTCTCCGGGAACTCTCCTCCAATCAAAGCCTGGCGCACGAAACTAATCA
GGTGTTGACTGAGGTGCAGTCCTCTATTGACGACGTGAATACCATCTTCA
AGGATCTGGCCGTTATGGTTGGCGACCAAAGCTCGCAGGTGGAGTATGTT
GAGGTCGCGGTGGCAGACTCTACGCAAAACGTGCAGCGAGCGCATCGCGA
ATTGCAAAAGACAAAGAAGAGGCATGAACGCAACAAGCGTTTCTTTTTCG
CTTCTCTTATAACGGTGGCGTTGGTCGTTGCCGTTTTGCTCATTATCTTG
CTGAGCTAA
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protein sequence of Ggra10879.t1

>Ggra10879.t1 ID=Ggra10879.t1|Name=Ggra10879.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=303bp
MSFGDAAPTLAAADAQSAPAIGELQRLLKPLAANNAALRHTTKALLRARA
RAAVAPSSSPPPSPSPLPSPSPLPSPSPPPDLKRVRALREQNRHIARAAA
ALVSAIDTRLAAASAPVAQRAAAAKRQFQLHLDDFSDALQHSIRAEKLFV
DSVHDAQAERRDRLQKENEAALQQEREALRIASEADPLLRSAQRTQRERA
TLRELSSNQSLAHETNQVLTEVQSSIDDVNTIFKDLAVMVGDQSSQVEYV
EVAVADSTQNVQRAHRELQKTKKRHERNKRFFFASLITVALVVAVLLIIL
LS*
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mRNA from alignment at tig00000125_pilon:281251..282159-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra10879.t1 ID=Ggra10879.t1|Name=Ggra10879.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=909bp|location=Sequence derived from alignment at tig00000125_pilon:281251..282159- (Gracilaria gracilis GNS1m male)
ATGTCGTTCGGCGACGCGGCGCCCACGCTGGCCGCCGCCGACGCCCAATC
CGCGCCCGCCATCGGCGAGCTGCAGCGCCTGCTCAAACCGCTCGCCGCCA
ACAACGCCGCGCTGCGCCACACCACCAAGGCGCTGCTGCGCGCGCGCGCG
CGCGCCGCCGTCGCGCCGTCGTCGTCGCCGCCGCCGTCTCCGTCGCCGCT
GCCGTCGCCGTCGCCGCTGCCGTCGCCGTCGCCGCCGCCGGACCTCAAGC
GCGTGCGCGCGCTGCGCGAGCAGAACCGTCACATTGCGCGCGCGGCCGCC
GCGCTGGTGTCCGCCATTGACACGCGGCTGGCGGCCGCTTCCGCGCCCGT
CGCGCAGAGGGCGGCCGCCGCCAAGCGCCAGTTTCAGCTCCACTTGGACG
ACTTTTCCGACGCCTTGCAGCACAGCATTCGCGCGGAGAAGCTGTTCGTC
GACTCCGTGCACGACGCGCAGGCGGAGCGGCGCGACAGGCTGCAGAAGGA
GAATGAGGCCGCTTTGCAGCAGGAGCGCGAGGCGCTGCGAATCGCGTCCG
AGGCCGACCCGCTGCTGCGTAGCGCGCAACGCACGCAGAGGGAACGCGCT
ACTCTCCGGGAACTCTCCTCCAATCAAAGCCTGGCGCACGAAACTAATCA
GGTGTTGACTGAGGTGCAGTCCTCTATTGACGACGTGAATACCATCTTCA
AGGATCTGGCCGTTATGGTTGGCGACCAAAGCTCGCAGGTGGAGTATGTT
GAGGTCGCGGTGGCAGACTCTACGCAAAACGTGCAGCGAGCGCATCGCGA
ATTGCAAAAGACAAAGAAGAGGCATGAACGCAACAAGCGTTTCTTTTTCG
CTTCTCTTATAACGGTGGCGTTGGTCGTTGCCGTTTTGCTCATTATCTTG
CTGAGCTAA
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Coding sequence (CDS) from alignment at tig00000125_pilon:281251..282159-

>Ggra10879.t1 ID=Ggra10879.t1|Name=Ggra10879.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=909bp|location=Sequence derived from alignment at tig00000125_pilon:281251..282159- (Gracilaria gracilis GNS1m male)
ATGTCGTTCGGCGACGCGGCGCCCACGCTGGCCGCCGCCGACGCCCAATC
CGCGCCCGCCATCGGCGAGCTGCAGCGCCTGCTCAAACCGCTCGCCGCCA
ACAACGCCGCGCTGCGCCACACCACCAAGGCGCTGCTGCGCGCGCGCGCG
CGCGCCGCCGTCGCGCCGTCGTCGTCGCCGCCGCCGTCTCCGTCGCCGCT
GCCGTCGCCGTCGCCGCTGCCGTCGCCGTCGCCGCCGCCGGACCTCAAGC
GCGTGCGCGCGCTGCGCGAGCAGAACCGTCACATTGCGCGCGCGGCCGCC
GCGCTGGTGTCCGCCATTGACACGCGGCTGGCGGCCGCTTCCGCGCCCGT
CGCGCAGAGGGCGGCCGCCGCCAAGCGCCAGTTTCAGCTCCACTTGGACG
ACTTTTCCGACGCCTTGCAGCACAGCATTCGCGCGGAGAAGCTGTTCGTC
GACTCCGTGCACGACGCGCAGGCGGAGCGGCGCGACAGGCTGCAGAAGGA
GAATGAGGCCGCTTTGCAGCAGGAGCGCGAGGCGCTGCGAATCGCGTCCG
AGGCCGACCCGCTGCTGCGTAGCGCGCAACGCACGCAGAGGGAACGCGCT
ACTCTCCGGGAACTCTCCTCCAATCAAAGCCTGGCGCACGAAACTAATCA
GGTGTTGACTGAGGTGCAGTCCTCTATTGACGACGTGAATACCATCTTCA
AGGATCTGGCCGTTATGGTTGGCGACCAAAGCTCGCAGGTGGAGTATGTT
GAGGTCGCGGTGGCAGACTCTACGCAAAACGTGCAGCGAGCGCATCGCGA
ATTGCAAAAGACAAAGAAGAGGCATGAACGCAACAAGCGTTTCTTTTTCG
CTTCTCTTATAACGGTGGCGTTGGTCGTTGCCGTTTTGCTCATTATCTTG
CTGAGCTAA
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