Ggra10876.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra10876.t1
Unique NameGgra10876.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length417
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000125_piloncontigtig00000125_pilon:273281..274531 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog3218.PP1S50_50V6.1
PFAMsGlycolytic,Got1
Max annot lvl35493|Streptophyta
KEGG rclassRC00438,RC00439,RC00603,RC00604
KEGG koko:K01623
KEGG ReactionR01068,R01070,R01829,R02568
KEGG Pathwayko00010,ko00030,ko00051,ko00680,ko00710,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,map00010,map00030,map00051,map00680,map00710,map01100,map01110,map01120,map01130,map01200,map01230
KEGG ModuleM00001,M00003,M00165,M00167
GOsGO:0001666,GO:0003674,GO:0003824,GO:0004332,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005975,GO:0005996,GO:0006006,GO:0006082,GO:0006090,GO:0006091,GO:0006094,GO:0006096,GO:0006139,GO:0006163,GO:0006164,GO:0006165,GO:0006725,GO:0006732,GO:0006733,GO:0006753,GO:0006754,GO:0006757,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0008150,GO:0008152,GO:0009056,GO:0009058,GO:0009108,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009132,GO:0009135,GO:0009141,GO:0009142,GO:0009144,GO:0009145,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009166,GO:0009167,GO:0009168,GO:0009179,GO:0009185,GO:0009199,GO:0009201,GO:0009205,GO:0009206,GO:0009259,GO:0009260,GO:0009507,GO:0009536,GO:0009628,GO:0009987,GO:0016051,GO:0016052,GO:0016053,GO:0016310,GO:0016829,GO:0016830,GO:0016832,GO:0017144,GO:0018130,GO:0019318,GO:0019319,GO:0019359,GO:0019362,GO:0019363,GO:0019438,GO:0019439,GO:0019637,GO:0019693,GO:0019752,GO:0032787,GO:0034404,GO:0034641,GO:0034654,GO:0034655,GO:0036293,GO:0042866,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044270,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046031,GO:0046034,GO:0046364,GO:0046390,GO:0046394,GO:0046434,GO:0046483,GO:0046496,GO:0046700,GO:0046939,GO:0050896,GO:0051186,GO:0051188,GO:0055086,GO:0070482,GO:0071704,GO:0072330,GO:0072521,GO:0072522,GO:0072524,GO:0072525,GO:0090407,GO:1901135,GO:1901137,GO:1901292,GO:1901293,GO:1901360,GO:1901361,GO:1901362,GO:1901564,GO:1901566,GO:1901575,GO:1901576
Evalue1.24e-147
EggNOG OGsCOG3588@1|root,KOG1557@2759|Eukaryota,37KBJ@33090|Viridiplantae,3GDDU@35493|Streptophyta
EC4.1.2.13
Descriptionfructose-bisphosphate aldolase
COG categoryG
BRITEko00000,ko00001,ko00002,ko01000,ko03036,ko04131,ko04147
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra10876Ggra10876Gracilaria gracilis GNS1m malegenetig00000125_pilon 273281..274531 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10876.t1.stop1Ggra10876.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000125_pilon 273281..273283 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10876.t1.CDS1Ggra10876.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000125_pilon 273281..274531 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10876.t1.exon1Ggra10876.t1.exon1Gracilaria gracilis GNS1m maleexontig00000125_pilon 273281..274531 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10876.t1.start1Ggra10876.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000125_pilon 274529..274531 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10876.t1Ggra10876.t1Gracilaria gracilis GNS1m malepolypeptidetig00000125_pilon 273281..274531 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra10876.t1 ID=Ggra10876.t1|Name=Ggra10876.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=417bp
MTVCFASPLALPRVARPSSSGSAWTPPPPPPRRLRVCAPPRRAAPRAPAM
TFEAGVFESQNQYAAELKRTAAYIASRGSGILASDESNSTTGKRLATIGL
DNTERNRRRWRELLYTADIGQYIAGAIMFEETLFQSAEDGTPFVDILRAK
GIVPGIKVDTGLTALPRTSGETATTGLDGLPERCAKYYQQGARFAKWRAV
MRIGKADGAPSDAAILENAHALARYAQISQANGLVPIVEPEVLLDGDHPI
EQTAYYTERVLSFTFRALNEYDVCLEGALLKPNMVNPGTDCAQQCDAHTV
AKYTLQTMMRGVPPAMPGIHFLSGGMSDQEATENLNLLNTIDGSEKAPWS
LNFSYGRALQMAVLRTWGGDDANKQKAQLLLAKLAKANGQAQLGKYSAPH
PSPGGNTRNFQPLRLV*
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spliced messenger RNA

>Ggra10876.t1 ID=Ggra10876.t1|Name=Ggra10876.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1251bp|location=Sequence derived from alignment at tig00000125_pilon:273281..274531- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACCGTCTGCTTCGCCAGCCCGCTAGCGCTGCCGCGCGTCGCGCGCCC
TTCGTCGAGCGGCAGCGCGTGGACGCCGCCGCCGCCGCCGCCGCGCCGCC
TGCGCGTGTGCGCGCCGCCGCGCCGCGCCGCGCCGCGCGCGCCCGCCATG
ACCTTCGAGGCGGGCGTGTTCGAGTCGCAAAACCAGTACGCCGCCGAGCT
CAAGCGCACGGCGGCCTACATCGCGTCGCGCGGCTCGGGCATTCTGGCCA
GCGACGAGTCCAACTCCACCACGGGCAAGCGGCTGGCCACCATCGGGCTG
GACAACACGGAGCGCAACCGCCGCCGCTGGCGCGAGCTGCTGTACACCGC
CGACATTGGCCAGTACATTGCGGGCGCCATCATGTTCGAAGAGACGCTGT
TCCAGAGCGCGGAGGACGGCACGCCCTTCGTTGACATTCTGCGCGCCAAG
GGTATTGTGCCGGGCATCAAGGTCGACACAGGGCTCACCGCGCTGCCGCG
TACCAGCGGCGAGACCGCTACCACCGGGCTGGACGGGCTGCCTGAACGCT
GCGCAAAGTACTATCAGCAGGGCGCGCGCTTCGCCAAGTGGCGCGCCGTC
ATGCGCATTGGCAAGGCGGACGGCGCCCCGTCCGACGCCGCCATTCTGGA
GAACGCGCACGCGCTGGCGCGCTACGCGCAGATCTCGCAGGCGAATGGAC
TGGTGCCCATCGTCGAGCCGGAGGTGCTATTGGACGGCGACCACCCCATC
GAGCAGACCGCTTACTACACCGAGCGCGTGCTCAGCTTCACCTTCCGCGC
GCTCAACGAGTACGACGTGTGTCTGGAAGGCGCGCTGCTCAAGCCCAACA
TGGTCAACCCCGGCACGGATTGCGCGCAGCAATGTGACGCGCATACCGTC
GCCAAGTACACGCTGCAGACCATGATGAGGGGCGTGCCGCCCGCCATGCC
GGGCATTCACTTCCTGTCGGGCGGCATGAGTGACCAGGAGGCTACCGAGA
ACCTCAACCTGCTCAATACCATCGACGGCTCGGAGAAAGCGCCGTGGAGC
CTCAATTTCTCGTACGGACGCGCGCTGCAGATGGCCGTGTTGAGGACGTG
GGGCGGCGATGACGCCAATAAACAAAAGGCGCAGCTGTTGTTGGCAAAGC
TCGCAAAGGCTAATGGACAGGCGCAGCTCGGCAAGTATAGTGCGCCGCAT
CCTTCGCCGGGTGGAAACACGCGTAACTTCCAACCGTTGCGACTGGTGTG
A
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protein sequence of Ggra10876.t1

>Ggra10876.t1 ID=Ggra10876.t1|Name=Ggra10876.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=417bp
MTVCFASPLALPRVARPSSSGSAWTPPPPPPRRLRVCAPPRRAAPRAPAM
TFEAGVFESQNQYAAELKRTAAYIASRGSGILASDESNSTTGKRLATIGL
DNTERNRRRWRELLYTADIGQYIAGAIMFEETLFQSAEDGTPFVDILRAK
GIVPGIKVDTGLTALPRTSGETATTGLDGLPERCAKYYQQGARFAKWRAV
MRIGKADGAPSDAAILENAHALARYAQISQANGLVPIVEPEVLLDGDHPI
EQTAYYTERVLSFTFRALNEYDVCLEGALLKPNMVNPGTDCAQQCDAHTV
AKYTLQTMMRGVPPAMPGIHFLSGGMSDQEATENLNLLNTIDGSEKAPWS
LNFSYGRALQMAVLRTWGGDDANKQKAQLLLAKLAKANGQAQLGKYSAPH
PSPGGNTRNFQPLRLV*
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mRNA from alignment at tig00000125_pilon:273281..274531-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra10876.t1 ID=Ggra10876.t1|Name=Ggra10876.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1251bp|location=Sequence derived from alignment at tig00000125_pilon:273281..274531- (Gracilaria gracilis GNS1m male)
ATGACCGTCTGCTTCGCCAGCCCGCTAGCGCTGCCGCGCGTCGCGCGCCC
TTCGTCGAGCGGCAGCGCGTGGACGCCGCCGCCGCCGCCGCCGCGCCGCC
TGCGCGTGTGCGCGCCGCCGCGCCGCGCCGCGCCGCGCGCGCCCGCCATG
ACCTTCGAGGCGGGCGTGTTCGAGTCGCAAAACCAGTACGCCGCCGAGCT
CAAGCGCACGGCGGCCTACATCGCGTCGCGCGGCTCGGGCATTCTGGCCA
GCGACGAGTCCAACTCCACCACGGGCAAGCGGCTGGCCACCATCGGGCTG
GACAACACGGAGCGCAACCGCCGCCGCTGGCGCGAGCTGCTGTACACCGC
CGACATTGGCCAGTACATTGCGGGCGCCATCATGTTCGAAGAGACGCTGT
TCCAGAGCGCGGAGGACGGCACGCCCTTCGTTGACATTCTGCGCGCCAAG
GGTATTGTGCCGGGCATCAAGGTCGACACAGGGCTCACCGCGCTGCCGCG
TACCAGCGGCGAGACCGCTACCACCGGGCTGGACGGGCTGCCTGAACGCT
GCGCAAAGTACTATCAGCAGGGCGCGCGCTTCGCCAAGTGGCGCGCCGTC
ATGCGCATTGGCAAGGCGGACGGCGCCCCGTCCGACGCCGCCATTCTGGA
GAACGCGCACGCGCTGGCGCGCTACGCGCAGATCTCGCAGGCGAATGGAC
TGGTGCCCATCGTCGAGCCGGAGGTGCTATTGGACGGCGACCACCCCATC
GAGCAGACCGCTTACTACACCGAGCGCGTGCTCAGCTTCACCTTCCGCGC
GCTCAACGAGTACGACGTGTGTCTGGAAGGCGCGCTGCTCAAGCCCAACA
TGGTCAACCCCGGCACGGATTGCGCGCAGCAATGTGACGCGCATACCGTC
GCCAAGTACACGCTGCAGACCATGATGAGGGGCGTGCCGCCCGCCATGCC
GGGCATTCACTTCCTGTCGGGCGGCATGAGTGACCAGGAGGCTACCGAGA
ACCTCAACCTGCTCAATACCATCGACGGCTCGGAGAAAGCGCCGTGGAGC
CTCAATTTCTCGTACGGACGCGCGCTGCAGATGGCCGTGTTGAGGACGTG
GGGCGGCGATGACGCCAATAAACAAAAGGCGCAGCTGTTGTTGGCAAAGC
TCGCAAAGGCTAATGGACAGGCGCAGCTCGGCAAGTATAGTGCGCCGCAT
CCTTCGCCGGGTGGAAACACGCGTAACTTCCAACCGTTGCGACTGGTGTG
A
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Coding sequence (CDS) from alignment at tig00000125_pilon:273281..274531-

>Ggra10876.t1 ID=Ggra10876.t1|Name=Ggra10876.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1251bp|location=Sequence derived from alignment at tig00000125_pilon:273281..274531- (Gracilaria gracilis GNS1m male)
ATGACCGTCTGCTTCGCCAGCCCGCTAGCGCTGCCGCGCGTCGCGCGCCC
TTCGTCGAGCGGCAGCGCGTGGACGCCGCCGCCGCCGCCGCCGCGCCGCC
TGCGCGTGTGCGCGCCGCCGCGCCGCGCCGCGCCGCGCGCGCCCGCCATG
ACCTTCGAGGCGGGCGTGTTCGAGTCGCAAAACCAGTACGCCGCCGAGCT
CAAGCGCACGGCGGCCTACATCGCGTCGCGCGGCTCGGGCATTCTGGCCA
GCGACGAGTCCAACTCCACCACGGGCAAGCGGCTGGCCACCATCGGGCTG
GACAACACGGAGCGCAACCGCCGCCGCTGGCGCGAGCTGCTGTACACCGC
CGACATTGGCCAGTACATTGCGGGCGCCATCATGTTCGAAGAGACGCTGT
TCCAGAGCGCGGAGGACGGCACGCCCTTCGTTGACATTCTGCGCGCCAAG
GGTATTGTGCCGGGCATCAAGGTCGACACAGGGCTCACCGCGCTGCCGCG
TACCAGCGGCGAGACCGCTACCACCGGGCTGGACGGGCTGCCTGAACGCT
GCGCAAAGTACTATCAGCAGGGCGCGCGCTTCGCCAAGTGGCGCGCCGTC
ATGCGCATTGGCAAGGCGGACGGCGCCCCGTCCGACGCCGCCATTCTGGA
GAACGCGCACGCGCTGGCGCGCTACGCGCAGATCTCGCAGGCGAATGGAC
TGGTGCCCATCGTCGAGCCGGAGGTGCTATTGGACGGCGACCACCCCATC
GAGCAGACCGCTTACTACACCGAGCGCGTGCTCAGCTTCACCTTCCGCGC
GCTCAACGAGTACGACGTGTGTCTGGAAGGCGCGCTGCTCAAGCCCAACA
TGGTCAACCCCGGCACGGATTGCGCGCAGCAATGTGACGCGCATACCGTC
GCCAAGTACACGCTGCAGACCATGATGAGGGGCGTGCCGCCCGCCATGCC
GGGCATTCACTTCCTGTCGGGCGGCATGAGTGACCAGGAGGCTACCGAGA
ACCTCAACCTGCTCAATACCATCGACGGCTCGGAGAAAGCGCCGTGGAGC
CTCAATTTCTCGTACGGACGCGCGCTGCAGATGGCCGTGTTGAGGACGTG
GGGCGGCGATGACGCCAATAAACAAAAGGCGCAGCTGTTGTTGGCAAAGC
TCGCAAAGGCTAATGGACAGGCGCAGCTCGGCAAGTATAGTGCGCCGCAT
CCTTCGCCGGGTGGAAACACGCGTAACTTCCAACCGTTGCGACTGGTGTG
A
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