Ggra10869.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra10869.t1
Unique Name	Ggra10869.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	466

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000125_pilon	contig	tig00000125_pilon:243454..244851 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra10869	Ggra10869	Gracilaria gracilis GNS1m male	gene	tig00000125_pilon 243454..244851 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra10869.t1.stop1	Ggra10869.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000125_pilon 243454..243456 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra10869.t1.CDS1	Ggra10869.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000125_pilon 243454..244851 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra10869.t1.exon1	Ggra10869.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000125_pilon 243454..244851 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra10869.t1.start1	Ggra10869.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000125_pilon 244849..244851 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra10869.t1	Ggra10869.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000125_pilon 243454..244851 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000125_pilon:243454..244851-
coding sequence from alignment at tig00000125_pilon:243454..244851-

mRNA sequence

>Ggra10869.t1 ID=Ggra10869.t1|Name=Ggra10869.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=466bp
MDVGEEETLAPSPRDRARPRMVQTRQSLGAVGRVASRVKTSGMSMIPTSI
LGWGKDDEQNASVSPWAAENTASARMEHTTPQAEAESEALKKKNTRSPRT
QDSAAFASPVSNTSRQGTMEDVSRNIQRRRTGHFTALSRKSDMDKAAELN
GQTLLKSSSNVVPRRRSTHKGRGETITRSTLDLREEKSGAGTFNPTSLMK
GVSKLILRNGGGDADVKPTASSGEHMKQSVPGTSPVSDDLENDNQHQKTL
KTSRLSRGFGLHKEKPKEDAEVSKKKMIVTPAKESRIAQSKSKAAIEVSK
GLAKSISSAARAPLDLVSDKSTSANHQARGSKQHDGKHQVQFSASGKAKD
KEVKNPKLRSSWFGFGREETSTDDSRKRGPTRVRGKSRLRTHINPSHAEK
GTPSAEVKKKNPKGLDHVVDFAVDDYFDSEEDEIEAGGNVRSLAEDDFIS
YQTRHMRKGDRGRNR*

spliced messenger RNA

>Ggra10869.t1 ID=Ggra10869.t1|Name=Ggra10869.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1398bp|location=Sequence derived from alignment at tig00000125_pilon:243454..244851- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGACGTAGGCGAAGAAGAGACGCTTGCCCCGTCTCCGAGGGACAGGGC
AAGACCCCGTATGGTTCAGACTCGACAGTCTCTAGGCGCCGTTGGAAGGG
TTGCTTCTCGTGTCAAAACCTCTGGAATGTCTATGATACCCACCTCCATC
TTAGGCTGGGGAAAGGACGATGAACAAAATGCAAGCGTTTCACCCTGGGC
CGCGGAGAACACCGCATCGGCGCGAATGGAACACACAACTCCACAGGCCG
AGGCGGAGAGCGAAGCTTTGAAAAAGAAGAACACGCGGTCGCCGAGAACA
CAAGATTCTGCAGCCTTCGCCTCCCCAGTTTCAAACACTTCGCGTCAGGG
AACAATGGAAGATGTAAGCCGCAACATTCAGAGAAGAAGAACCGGGCACT
TCACCGCCCTTTCTCGAAAATCTGACATGGACAAGGCAGCCGAACTTAAT
GGCCAAACGCTGCTTAAGTCCAGCTCCAATGTCGTTCCCCGGAGACGCTC
CACGCACAAAGGCCGTGGCGAAACCATTACGCGTTCAACACTCGACCTTA
GGGAAGAAAAATCGGGCGCGGGTACTTTCAATCCAACGTCATTGATGAAA
GGCGTTTCTAAGCTGATTCTCAGAAATGGAGGTGGTGATGCTGACGTCAA
ACCAACAGCATCATCAGGAGAACACATGAAACAGTCTGTACCAGGTACAT
CCCCGGTATCCGATGACCTTGAAAACGACAATCAACACCAAAAGACTCTT
AAGACGAGCCGGCTATCCCGGGGATTCGGCCTTCACAAGGAAAAGCCCAA
AGAAGATGCCGAGGTAAGTAAAAAGAAAATGATTGTGACTCCTGCAAAGG
AATCAAGAATCGCTCAAAGCAAAAGCAAAGCCGCCATTGAAGTCTCCAAA
GGACTTGCCAAAAGCATATCGTCAGCAGCAAGGGCACCATTGGATCTCGT
GTCCGACAAAAGCACCTCAGCAAACCACCAGGCAAGAGGCAGTAAACAGC
ACGACGGAAAGCACCAAGTGCAGTTTAGCGCGTCTGGAAAAGCAAAAGAC
AAGGAGGTCAAAAATCCAAAGCTTCGAAGTTCCTGGTTTGGGTTTGGCCG
AGAAGAAACATCGACCGATGACTCTAGAAAACGTGGACCCACCAGAGTTA
GAGGAAAGTCTAGACTTCGGACACATATCAATCCATCACACGCTGAAAAA
GGGACTCCCTCCGCTGAGGTGAAGAAGAAGAATCCAAAAGGGTTAGACCA
CGTTGTAGACTTTGCTGTTGATGACTATTTTGATAGTGAGGAAGACGAGA
TTGAGGCGGGTGGGAATGTTCGGTCTCTTGCCGAGGATGACTTCATTTCG
TACCAAACAAGACATATGAGGAAAGGGGACCGCGGGAGGAACCGCTGA

protein sequence of Ggra10869.t1

>Ggra10869.t1 ID=Ggra10869.t1|Name=Ggra10869.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=466bp
MDVGEEETLAPSPRDRARPRMVQTRQSLGAVGRVASRVKTSGMSMIPTSI
LGWGKDDEQNASVSPWAAENTASARMEHTTPQAEAESEALKKKNTRSPRT
QDSAAFASPVSNTSRQGTMEDVSRNIQRRRTGHFTALSRKSDMDKAAELN
GQTLLKSSSNVVPRRRSTHKGRGETITRSTLDLREEKSGAGTFNPTSLMK
GVSKLILRNGGGDADVKPTASSGEHMKQSVPGTSPVSDDLENDNQHQKTL
KTSRLSRGFGLHKEKPKEDAEVSKKKMIVTPAKESRIAQSKSKAAIEVSK
GLAKSISSAARAPLDLVSDKSTSANHQARGSKQHDGKHQVQFSASGKAKD
KEVKNPKLRSSWFGFGREETSTDDSRKRGPTRVRGKSRLRTHINPSHAEK
GTPSAEVKKKNPKGLDHVVDFAVDDYFDSEEDEIEAGGNVRSLAEDDFIS
YQTRHMRKGDRGRNR*

mRNA from alignment at tig00000125_pilon:243454..244851-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra10869.t1 ID=Ggra10869.t1|Name=Ggra10869.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1398bp|location=Sequence derived from alignment at tig00000125_pilon:243454..244851- (Gracilaria gracilis GNS1m male)
ATGGACGTAGGCGAAGAAGAGACGCTTGCCCCGTCTCCGAGGGACAGGGC
AAGACCCCGTATGGTTCAGACTCGACAGTCTCTAGGCGCCGTTGGAAGGG
TTGCTTCTCGTGTCAAAACCTCTGGAATGTCTATGATACCCACCTCCATC
TTAGGCTGGGGAAAGGACGATGAACAAAATGCAAGCGTTTCACCCTGGGC
CGCGGAGAACACCGCATCGGCGCGAATGGAACACACAACTCCACAGGCCG
AGGCGGAGAGCGAAGCTTTGAAAAAGAAGAACACGCGGTCGCCGAGAACA
CAAGATTCTGCAGCCTTCGCCTCCCCAGTTTCAAACACTTCGCGTCAGGG
AACAATGGAAGATGTAAGCCGCAACATTCAGAGAAGAAGAACCGGGCACT
TCACCGCCCTTTCTCGAAAATCTGACATGGACAAGGCAGCCGAACTTAAT
GGCCAAACGCTGCTTAAGTCCAGCTCCAATGTCGTTCCCCGGAGACGCTC
CACGCACAAAGGCCGTGGCGAAACCATTACGCGTTCAACACTCGACCTTA
GGGAAGAAAAATCGGGCGCGGGTACTTTCAATCCAACGTCATTGATGAAA
GGCGTTTCTAAGCTGATTCTCAGAAATGGAGGTGGTGATGCTGACGTCAA
ACCAACAGCATCATCAGGAGAACACATGAAACAGTCTGTACCAGGTACAT
CCCCGGTATCCGATGACCTTGAAAACGACAATCAACACCAAAAGACTCTT
AAGACGAGCCGGCTATCCCGGGGATTCGGCCTTCACAAGGAAAAGCCCAA
AGAAGATGCCGAGGTAAGTAAAAAGAAAATGATTGTGACTCCTGCAAAGG
AATCAAGAATCGCTCAAAGCAAAAGCAAAGCCGCCATTGAAGTCTCCAAA
GGACTTGCCAAAAGCATATCGTCAGCAGCAAGGGCACCATTGGATCTCGT
GTCCGACAAAAGCACCTCAGCAAACCACCAGGCAAGAGGCAGTAAACAGC
ACGACGGAAAGCACCAAGTGCAGTTTAGCGCGTCTGGAAAAGCAAAAGAC
AAGGAGGTCAAAAATCCAAAGCTTCGAAGTTCCTGGTTTGGGTTTGGCCG
AGAAGAAACATCGACCGATGACTCTAGAAAACGTGGACCCACCAGAGTTA
GAGGAAAGTCTAGACTTCGGACACATATCAATCCATCACACGCTGAAAAA
GGGACTCCCTCCGCTGAGGTGAAGAAGAAGAATCCAAAAGGGTTAGACCA
CGTTGTAGACTTTGCTGTTGATGACTATTTTGATAGTGAGGAAGACGAGA
TTGAGGCGGGTGGGAATGTTCGGTCTCTTGCCGAGGATGACTTCATTTCG
TACCAAACAAGACATATGAGGAAAGGGGACCGCGGGAGGAACCGCTGA

Coding sequence (CDS) from alignment at tig00000125_pilon:243454..244851-

>Ggra10869.t1 ID=Ggra10869.t1|Name=Ggra10869.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1398bp|location=Sequence derived from alignment at tig00000125_pilon:243454..244851- (Gracilaria gracilis GNS1m male)
ATGGACGTAGGCGAAGAAGAGACGCTTGCCCCGTCTCCGAGGGACAGGGC
AAGACCCCGTATGGTTCAGACTCGACAGTCTCTAGGCGCCGTTGGAAGGG
TTGCTTCTCGTGTCAAAACCTCTGGAATGTCTATGATACCCACCTCCATC
TTAGGCTGGGGAAAGGACGATGAACAAAATGCAAGCGTTTCACCCTGGGC
CGCGGAGAACACCGCATCGGCGCGAATGGAACACACAACTCCACAGGCCG
AGGCGGAGAGCGAAGCTTTGAAAAAGAAGAACACGCGGTCGCCGAGAACA
CAAGATTCTGCAGCCTTCGCCTCCCCAGTTTCAAACACTTCGCGTCAGGG
AACAATGGAAGATGTAAGCCGCAACATTCAGAGAAGAAGAACCGGGCACT
TCACCGCCCTTTCTCGAAAATCTGACATGGACAAGGCAGCCGAACTTAAT
GGCCAAACGCTGCTTAAGTCCAGCTCCAATGTCGTTCCCCGGAGACGCTC
CACGCACAAAGGCCGTGGCGAAACCATTACGCGTTCAACACTCGACCTTA
GGGAAGAAAAATCGGGCGCGGGTACTTTCAATCCAACGTCATTGATGAAA
GGCGTTTCTAAGCTGATTCTCAGAAATGGAGGTGGTGATGCTGACGTCAA
ACCAACAGCATCATCAGGAGAACACATGAAACAGTCTGTACCAGGTACAT
CCCCGGTATCCGATGACCTTGAAAACGACAATCAACACCAAAAGACTCTT
AAGACGAGCCGGCTATCCCGGGGATTCGGCCTTCACAAGGAAAAGCCCAA
AGAAGATGCCGAGGTAAGTAAAAAGAAAATGATTGTGACTCCTGCAAAGG
AATCAAGAATCGCTCAAAGCAAAAGCAAAGCCGCCATTGAAGTCTCCAAA
GGACTTGCCAAAAGCATATCGTCAGCAGCAAGGGCACCATTGGATCTCGT
GTCCGACAAAAGCACCTCAGCAAACCACCAGGCAAGAGGCAGTAAACAGC
ACGACGGAAAGCACCAAGTGCAGTTTAGCGCGTCTGGAAAAGCAAAAGAC
AAGGAGGTCAAAAATCCAAAGCTTCGAAGTTCCTGGTTTGGGTTTGGCCG
AGAAGAAACATCGACCGATGACTCTAGAAAACGTGGACCCACCAGAGTTA
GAGGAAAGTCTAGACTTCGGACACATATCAATCCATCACACGCTGAAAAA
GGGACTCCCTCCGCTGAGGTGAAGAAGAAGAATCCAAAAGGGTTAGACCA
CGTTGTAGACTTTGCTGTTGATGACTATTTTGATAGTGAGGAAGACGAGA
TTGAGGCGGGTGGGAATGTTCGGTCTCTTGCCGAGGATGACTTCATTTCG
TACCAAACAAGACATATGAGGAAAGGGGACCGCGGGAGGAACCGCTGA