Ggra10845.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra10845.t1
Unique Name	Ggra10845.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	556

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000192_pilon	contig	tig00000192_pilon:238046..242498 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	1333507.AUTQ01000189_gene2507
Max annot lvl	1236\|Gammaproteobacteria
Evalue	2.81e-109
EggNOG OGs	28ID6@1\|root,2Z8FE@2\|Bacteria,1MX0W@1224\|Proteobacteria,1S2X2@1236\|Gammaproteobacteria

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra10845	Ggra10845	Gracilaria gracilis GNS1m male	gene	tig00000192_pilon 238046..242498 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra10845.t1	Ggra10845.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000192_pilon 238046..242498 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra10845.t1.start1	Ggra10845.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000192_pilon 238046..238048 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra10845.t1.CDS1	Ggra10845.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000192_pilon 238046..238987 +
Ggra10845.t1.CDS2	Ggra10845.t1.CDS2	Gracilaria gracilis GNS1m male	CDS	tig00000192_pilon 241773..242498 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra10845.t1.exon1	Ggra10845.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000192_pilon 238046..238987 +
Ggra10845.t1.exon2	Ggra10845.t1.exon2	Gracilaria gracilis GNS1m male	exon	tig00000192_pilon 241773..242498 +

The following intron feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra10845.t1.intron1	Ggra10845.t1.intron1	Gracilaria gracilis GNS1m male	intron	tig00000192_pilon 238988..241772 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra10845.t1.stop1	Ggra10845.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000192_pilon 242496..242498 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000192_pilon:238046..242498+
coding sequence from alignment at tig00000192_pilon:238046..242498+

mRNA sequence

>Ggra10845.t1 ID=Ggra10845.t1|Name=Ggra10845.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=556bp
MVLWFEKLVGFAEQSPHHVRQNIYIVGKQLISRKNGRAFQFGTLTTPSLA
ELRAQTTSLTHKSSPTTVEEVVENVQHLHQNPLFNGAVFQVASQFNLLEM
ANPGVTPEAGVGVYEFDRTQGPACAVACGAGTIFRNYFVQVDGQVGQDAN
RQVDCLKDLGQKLGNQNGSLWELRNGYVFATAPGLRRIHDHIQAIDDEEH
DELRGLLRIGVQQDTEETLRNSGNRVTQVYCSAVPVAYSNHSSTLWAPFA
KLVLEAAYESTLLLALLNRERTGCSMVFLTLLGGGVFGNHVEWIVDAIER
AITLVQNSGLQVKIVASQFNLLENNPDVSPEVGVGHYQFLRTKGPACAVA
CGAGTIYRNYFVEVDGQVGQDSSRQIDCIQDLGDKLGNQDGSLWKVKNGY
VFPNDSGLRRIHDHLNSIDEKEYDELRGLLRIGRLDKTDVTIGDSKNRVT
QAYCSALSVAYTKHSNALWAPFAKLVLEAAYESTLLVAVSNYHLYDVRLV
YLTLLGGGVFGNRMEWIVVAIERAISSVKNSGLHIKIVSYGRPCPELRDL
LTDLL*

spliced messenger RNA

>Ggra10845.t1 ID=Ggra10845.t1|Name=Ggra10845.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1668bp|location=Sequence derived from alignment at tig00000192_pilon:238046..242498+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTGCTCTGGTTCGAAAAGCTTGTCGGCTTTGCCGAGCAATCCCCGCA
TCACGTGCGACAGAACATTTACATCGTCGGCAAACAGCTTATCTCTCGTA
AAAACGGCAGAGCATTTCAATTTGGAACGCTTACTACACCATCTCTCGCT
GAACTAAGGGCTCAAACCACCTCCCTCACCCACAAATCATCTCCGACCAC
CGTGGAAGAGGTTGTCGAGAACGTTCAACATCTGCACCAAAACCCGCTCT
TCAACGGCGCTGTTTTCCAGGTTGCGTCGCAGTTCAACCTGTTGGAAATG
GCCAACCCGGGCGTCACCCCGGAGGCTGGTGTGGGTGTCTACGAGTTCGA
CCGCACACAAGGCCCAGCGTGTGCCGTTGCTTGTGGCGCGGGAACCATCT
TTCGCAACTACTTCGTGCAAGTAGACGGACAAGTTGGACAGGACGCCAAT
CGACAAGTCGATTGTCTTAAGGATCTTGGACAAAAGCTTGGTAACCAGAA
TGGATCGCTTTGGGAACTACGGAACGGGTACGTTTTCGCAACCGCCCCAG
GACTTCGTCGTATCCACGATCATATACAGGCCATCGACGACGAAGAACAT
GATGAACTTCGTGGACTTCTTCGCATCGGAGTCCAGCAAGACACAGAAGA
AACACTTAGGAATAGTGGTAATCGGGTAACGCAGGTGTACTGTTCAGCCG
TCCCGGTTGCCTATTCCAACCATTCCAGCACCCTATGGGCTCCCTTTGCA
AAGTTGGTACTTGAAGCAGCTTACGAGAGCACCCTGCTTCTAGCATTGCT
TAATCGTGAGCGAACGGGGTGCAGCATGGTATTTCTAACTCTCTTGGGCG
GCGGTGTATTTGGTAATCACGTGGAATGGATTGTCGATGCGATCGAGAGA
GCTATTACACTGGTGCAAAACTCTGGACTTCAAGTAAAGATTGTTGCGTC
GCAGTTCAATCTGTTGGAAAACAACCCCGACGTCTCTCCAGAAGTTGGTG
TAGGTCACTACCAATTCCTTCGAACAAAAGGTCCTGCATGTGCCGTTGCT
TGTGGCGCTGGAACAATCTATCGCAATTACTTTGTAGAGGTAGATGGACA
GGTTGGACAGGACTCCAGTCGACAGATCGACTGTATCCAGGATCTCGGAG
ACAAGCTTGGCAACCAGGATGGATCGCTTTGGAAGGTAAAGAACGGATAC
GTTTTCCCAAATGACTCCGGACTTCGTCGTATACACGACCACTTAAATAG
TATCGACGAAAAAGAGTACGATGAACTTCGTGGACTTCTCCGAATTGGAC
GCCTCGATAAAACCGATGTGACAATTGGAGACTCTAAGAATCGCGTAACG
CAGGCTTATTGTTCTGCTCTTTCCGTTGCTTATACTAAACACTCCAACGC
TTTATGGGCTCCTTTTGCAAAATTGGTGCTTGAAGCAGCTTACGAAAGCA
CGTTGCTCGTCGCAGTGTCTAATTATCACCTATATGACGTTCGTTTAGTG
TATCTAACTTTGTTGGGTGGTGGTGTATTTGGTAATCGCATGGAATGGAT
TGTTGTGGCCATCGAGCGAGCCATTTCAAGTGTGAAAAACTCTGGTCTTC
ATATCAAGATTGTAAGCTACGGGAGACCTTGCCCCGAACTTAGGGATCTG
CTAACTGATCTACTGTAA

protein sequence of Ggra10845.t1

>Ggra10845.t1 ID=Ggra10845.t1|Name=Ggra10845.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=556bp
MVLWFEKLVGFAEQSPHHVRQNIYIVGKQLISRKNGRAFQFGTLTTPSLA
ELRAQTTSLTHKSSPTTVEEVVENVQHLHQNPLFNGAVFQVASQFNLLEM
ANPGVTPEAGVGVYEFDRTQGPACAVACGAGTIFRNYFVQVDGQVGQDAN
RQVDCLKDLGQKLGNQNGSLWELRNGYVFATAPGLRRIHDHIQAIDDEEH
DELRGLLRIGVQQDTEETLRNSGNRVTQVYCSAVPVAYSNHSSTLWAPFA
KLVLEAAYESTLLLALLNRERTGCSMVFLTLLGGGVFGNHVEWIVDAIER
AITLVQNSGLQVKIVASQFNLLENNPDVSPEVGVGHYQFLRTKGPACAVA
CGAGTIYRNYFVEVDGQVGQDSSRQIDCIQDLGDKLGNQDGSLWKVKNGY
VFPNDSGLRRIHDHLNSIDEKEYDELRGLLRIGRLDKTDVTIGDSKNRVT
QAYCSALSVAYTKHSNALWAPFAKLVLEAAYESTLLVAVSNYHLYDVRLV
YLTLLGGGVFGNRMEWIVVAIERAISSVKNSGLHIKIVSYGRPCPELRDL
LTDLL*

mRNA from alignment at tig00000192_pilon:238046..242498+

Legend: polypeptidestart_codonCDSexonintronstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra10845.t1 ID=Ggra10845.t1|Name=Ggra10845.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=4453bp|location=Sequence derived from alignment at tig00000192_pilon:238046..242498+ (Gracilaria gracilis GNS1m male)
ATGGTGCTCTGGTTCGAAAAGCTTGTCGGCTTTGCCGAGCAATCCCCGCA
TCACGTGCGACAGAACATTTACATCGTCGGCAAACAGCTTATCTCTCGTA
AAAACGGCAGAGCATTTCAATTTGGAACGCTTACTACACCATCTCTCGCT
GAACTAAGGGCTCAAACCACCTCCCTCACCCACAAATCATCTCCGACCAC
CGTGGAAGAGGTTGTCGAGAACGTTCAACATCTGCACCAAAACCCGCTCT
TCAACGGCGCTGTTTTCCAGGTTGCGTCGCAGTTCAACCTGTTGGAAATG
GCCAACCCGGGCGTCACCCCGGAGGCTGGTGTGGGTGTCTACGAGTTCGA
CCGCACACAAGGCCCAGCGTGTGCCGTTGCTTGTGGCGCGGGAACCATCT
TTCGCAACTACTTCGTGCAAGTAGACGGACAAGTTGGACAGGACGCCAAT
CGACAAGTCGATTGTCTTAAGGATCTTGGACAAAAGCTTGGTAACCAGAA
TGGATCGCTTTGGGAACTACGGAACGGGTACGTTTTCGCAACCGCCCCAG
GACTTCGTCGTATCCACGATCATATACAGGCCATCGACGACGAAGAACAT
GATGAACTTCGTGGACTTCTTCGCATCGGAGTCCAGCAAGACACAGAAGA
AACACTTAGGAATAGTGGTAATCGGGTAACGCAGGTGTACTGTTCAGCCG
TCCCGGTTGCCTATTCCAACCATTCCAGCACCCTATGGGCTCCCTTTGCA
AAGTTGGTACTTGAAGCAGCTTACGAGAGCACCCTGCTTCTAGCATTGCT
TAATCGTGAGCGAACGGGGTGCAGCATGGTATTTCTAACTCTCTTGGGCG
GCGGTGTATTTGGTAATCACGTGGAATGGATTGTCGATGCGATCGAGAGA
GCTATTACACTGGTGCAAAACTCTGGACTTCAAGTAAAGATTGTGAGCTA
CCAGGAACCATGCGCCGAAATTAGACGTCTATTAACTAGCTGATTCGTTT
TAAAGAACTCGTGTGCTCACTAGCTAGGGTCATGAAGTCACGTCTTCGGA
GACCCCGCATGGGATTCTCTGGATGCTGGACTGGGTACTGACAGTACAGA
AATGGCAAgtgaaagagcacgaccagaaacatgatacaagaacatgataa
ttaagctagcgcactcataaacgagagagagagagaAGAACATGATGAAC
GAGGATTTGAGGATTGGGTTTCGCCAAATCCAGCCTGGCTTCCCATTCGC
TCCGCTCACGTGGTTTTCATTCATAGGGTTGTGGCACCTGTGGGCCGAAA
TATGAAGCCCAGAATGTCCAAACGCCCGGGCAGGCGGAAAAGCGAAACCC
GTTATTGAGGGGCCGCGTGTACTTAAATCTTCTTTGCCCACAGGCATTCG
TTCGACCCATCCAGTATCCCCATGCTGATTCTTTTTGTACGTCTACCAAC
ACAAGACTTGTTTGATCGGACTATATACCGCTTATTGTTTTGTCAGTTCT
CCGATGTGAGTTCCACCTGCTGCTGTCAGGATTTCGGCGGGATCTCCGGT
CCTTTTTTTCAGGACATCGACAAAGTCCCGAATGTATGCAGTATCATTAA
GACGGGACTTTCCCCAAGGGTACGAAACAACGGTCGCGGGCGAAACCATT
AACAGCCATCTTCTAATTTATGAAACACAAAGGGTCATGTCCTATGATGG
CATGCtctttttcttctttactgtggtcagccgcccctgattccgaggcg
gccgaagaactatctattagtgtttgtatctaaaggtagttctctctctt
aaagaaggccagaaaccgtaacggccactgcttgatcacatcaactaacg
atttgtctttccgttcctcaagcgccggtagttcgtcacgccgggctttg
tttgttagtagacagcgaaaaagaacatgatctacgtctttcttaaccgc
cgtgccacaggtgcagcgtagcacctttccgttcagatacgagctcaccg
ggtggagcgttggaacgtgccgagtggcaaactgcgccaacgttacctcc
gatagcctcaacatcttttcatccccatgttcgtctctctcgactggtaa
tacacttttactccgcactttgagccttaccctcgccattacgtccatca
tgtccacaggagttgcatttgctgtgtaagagaaagtttgaggcctgatt
tagcaagcgcatcgacactgtcatttcggaaaactccgcagtgacttggt
gcccaacatacgtacacagaagaacaacgactcacgctgtgaagcgtgaa
tgccaaatcctgaaggctcctgctttgaaagcgaagattcccttgtagtg
cctcgactaacgccgaagaatccgaaatcactcttataactgtgtctttt
tcctcttgcacagcttgaagggcagcctgcatagcgtggatctcggccgt
gtacgagcagacgttgatgcccgcaggtaaaactgcccttctcgtttccg
cggtgtttttggagtatatctcgtacgctccggcgATGGAATGCTCAATC
AAGCCCTTTCGAGAACTTCAGGAAGGTGATTGGCGAAGCGAAAGTAGTTC
AAACAAAAAGTTATAGTCATTTTGCTTTGGCTTCCTTCGGGTCTTGGAGC
TTCCTGAGACAGACTCAGTTCTGCCAGTATATAAGAAGCTCACAGATCGC
GCTCCAAAACTCCTCTCCCGTCACCTCTTCACTCGTTTTCATTCGTCTCT
ACTGGTTACTGCAGCACCCGCTAGTCAAATCCTTTGCCGCCAAAACTATC
AGAACAAATTGAGCCATGCTTTGGTTTGAAAAGCTCGTTGGTTTTGCTGA
GGATTTGCCAGAACAAGTGCGAAAGAACATCACCCGCAGCGGAAATCAGT
TACTCTGCCCCGAAAACAACACGAGGCATCAGTGCGGAACGTTAACCATC
CCATGTCTCAACGTACTCCGGAGAgttagtggaggctctacagggcaact
tgcgatcgcaaagcatcctggttcagcgtatagccaagctgctgcaaact
ttgagcgcaacatgcattgtgttcgtcgtatgggtcccaagccattgcgg
tgtgtctgaaaatgaagaagtagacgagctcgcgaagtcgggtttaaaga
tctcccttgctcggcaaactgaggtcccagtggattttaatgacgtgaaa
gcgcagttaaagcagaagggaaggggtaagttacttttagcagtggcgga
taacgaggaacaggggaacatacggcggtccgaggtcacattggcgcagt
tcgccactacacacgttccaacgctgcacttggttagctcatacctcaac
ggaaaagttacgcgttgtgaatgtggaacggcaaccaagaaagacttaga
acatgtactttttcggtgcgctcttaccaacgcagctcgacgcgctgtgc
taccgacagttagagaacgaaaagacaagtcgttgttagacatgattaag
gaatgggcgtcacggtttttggtcttctttaagagagagaactatctcta
gatagaactaaagccgcctcgaaatcaggggcggctgaccataataaaga
agaggaagTGCTCCGGAGAGAGACGCGCGCAATCGTTGATATTTGGACTC
CTGCCACCGTGGAAGAAGCTGTTGCCAACGTTCAAGATCTGCATCAAGAC
CCGCGCTGTGACTTCGCTGTTTTTCAGGTTGCGTCGCAGTTCAATCTGTT
GGAAAACAACCCCGACGTCTCTCCAGAAGTTGGTGTAGGTCACTACCAAT
TCCTTCGAACAAAAGGTCCTGCATGTGCCGTTGCTTGTGGCGCTGGAACA
ATCTATCGCAATTACTTTGTAGAGGTAGATGGACAGGTTGGACAGGACTC
CAGTCGACAGATCGACTGTATCCAGGATCTCGGAGACAAGCTTGGCAACC
AGGATGGATCGCTTTGGAAGGTAAAGAACGGATACGTTTTCCCAAATGAC
TCCGGACTTCGTCGTATACACGACCACTTAAATAGTATCGACGAAAAAGA
GTACGATGAACTTCGTGGACTTCTCCGAATTGGACGCCTCGATAAAACCG
ATGTGACAATTGGAGACTCTAAGAATCGCGTAACGCAGGCTTATTGTTCT
GCTCTTTCCGTTGCTTATACTAAACACTCCAACGCTTTATGGGCTCCTTT
TGCAAAATTGGTGCTTGAAGCAGCTTACGAAAGCACGTTGCTCGTCGCAG
TGTCTAATTATCACCTATATGACGTTCGTTTAGTGTATCTAACTTTGTTG
GGTGGTGGTGTATTTGGTAATCGCATGGAATGGATTGTTGTGGCCATCGA
GCGAGCCATTTCAAGTGTGAAAAACTCTGGTCTTCATATCAAGATTGTAA
GCTACGGGAGACCTTGCCCCGAACTTAGGGATCTGCTAACTGATCTACTG
TAA

Coding sequence (CDS) from alignment at tig00000192_pilon:238046..242498+

>Ggra10845.t1 ID=Ggra10845.t1|Name=Ggra10845.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1668bp|location=Sequence derived from alignment at tig00000192_pilon:238046..242498+ (Gracilaria gracilis GNS1m male)
ATGGTGCTCTGGTTCGAAAAGCTTGTCGGCTTTGCCGAGCAATCCCCGCA
TCACGTGCGACAGAACATTTACATCGTCGGCAAACAGCTTATCTCTCGTA
AAAACGGCAGAGCATTTCAATTTGGAACGCTTACTACACCATCTCTCGCT
GAACTAAGGGCTCAAACCACCTCCCTCACCCACAAATCATCTCCGACCAC
CGTGGAAGAGGTTGTCGAGAACGTTCAACATCTGCACCAAAACCCGCTCT
TCAACGGCGCTGTTTTCCAGGTTGCGTCGCAGTTCAACCTGTTGGAAATG
GCCAACCCGGGCGTCACCCCGGAGGCTGGTGTGGGTGTCTACGAGTTCGA
CCGCACACAAGGCCCAGCGTGTGCCGTTGCTTGTGGCGCGGGAACCATCT
TTCGCAACTACTTCGTGCAAGTAGACGGACAAGTTGGACAGGACGCCAAT
CGACAAGTCGATTGTCTTAAGGATCTTGGACAAAAGCTTGGTAACCAGAA
TGGATCGCTTTGGGAACTACGGAACGGGTACGTTTTCGCAACCGCCCCAG
GACTTCGTCGTATCCACGATCATATACAGGCCATCGACGACGAAGAACAT
GATGAACTTCGTGGACTTCTTCGCATCGGAGTCCAGCAAGACACAGAAGA
AACACTTAGGAATAGTGGTAATCGGGTAACGCAGGTGTACTGTTCAGCCG
TCCCGGTTGCCTATTCCAACCATTCCAGCACCCTATGGGCTCCCTTTGCA
AAGTTGGTACTTGAAGCAGCTTACGAGAGCACCCTGCTTCTAGCATTGCT
TAATCGTGAGCGAACGGGGTGCAGCATGGTATTTCTAACTCTCTTGGGCG
GCGGTGTATTTGGTAATCACGTGGAATGGATTGTCGATGCGATCGAGAGA
GCTATTACACTGGTGCAAAACTCTGGACTTCAAGTAAAGATTGTTGCGTC
GCAGTTCAATCTGTTGGAAAACAACCCCGACGTCTCTCCAGAAGTTGGTG
TAGGTCACTACCAATTCCTTCGAACAAAAGGTCCTGCATGTGCCGTTGCT
TGTGGCGCTGGAACAATCTATCGCAATTACTTTGTAGAGGTAGATGGACA
GGTTGGACAGGACTCCAGTCGACAGATCGACTGTATCCAGGATCTCGGAG
ACAAGCTTGGCAACCAGGATGGATCGCTTTGGAAGGTAAAGAACGGATAC
GTTTTCCCAAATGACTCCGGACTTCGTCGTATACACGACCACTTAAATAG
TATCGACGAAAAAGAGTACGATGAACTTCGTGGACTTCTCCGAATTGGAC
GCCTCGATAAAACCGATGTGACAATTGGAGACTCTAAGAATCGCGTAACG
CAGGCTTATTGTTCTGCTCTTTCCGTTGCTTATACTAAACACTCCAACGC
TTTATGGGCTCCTTTTGCAAAATTGGTGCTTGAAGCAGCTTACGAAAGCA
CGTTGCTCGTCGCAGTGTCTAATTATCACCTATATGACGTTCGTTTAGTG
TATCTAACTTTGTTGGGTGGTGGTGTATTTGGTAATCGCATGGAATGGAT
TGTTGTGGCCATCGAGCGAGCCATTTCAAGTGTGAAAAACTCTGGTCTTC
ATATCAAGATTGTAAGCTACGGGAGACCTTGCCCCGAACTTAGGGATCTG
CTAACTGATCTACTGTAA