Ggra10825.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra10825.t1
Unique NameGgra10825.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length330
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000192_piloncontigtig00000192_pilon:173982..175382 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog1157637.KB892132_gene3644
PFAMsAPH
Max annot lvl201174|Actinobacteria
Evalue0.000113
EggNOG OGsCOG3178@1|root,COG3178@2|Bacteria,2GNRB@201174|Actinobacteria
Description'Phosphotransferase
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra10825Ggra10825Gracilaria gracilis GNS1m malegenetig00000192_pilon 173982..175382 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10825.t1Ggra10825.t1Gracilaria gracilis GNS1m malepolypeptidetig00000192_pilon 173982..175382 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10825.t1.stop1Ggra10825.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000192_pilon 173982..173984 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10825.t1.CDS1Ggra10825.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000192_pilon 173982..173991 -
Ggra10825.t1.CDS2Ggra10825.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000192_pilon 174403..175382 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10825.t1.exon1Ggra10825.t1.exon1Gracilaria gracilis GNS1m maleexontig00000192_pilon 173982..173991 -
Ggra10825.t1.exon2Ggra10825.t1.exon2Gracilaria gracilis GNS1m maleexontig00000192_pilon 174403..175382 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10825.t1.intron1Ggra10825.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000192_pilon 173992..174402 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10825.t1.start1Ggra10825.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000192_pilon 175380..175382 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra10825.t1 ID=Ggra10825.t1|Name=Ggra10825.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=330bp
METHYAFVVHPENGAVLTDTNNSLPTVLHDDITANLDILCANVRTVFHDA
YRVILLRTECEVLKSSANQSEDDSSEYTSKLLIFEIVSQESLTAPKGFLW
TPKETASRIVVQPMLPQILDFFREYEKAGLLVNMDRLHPYSRPGWFRDAA
SWIRTVAAFHDFCIKDIQQVTSKTEGCVLRVKSTDGSFYFKHVGPNIHYD
EVQTILVLSKVLSNEFKSPLDVNTDRKWMLMRDQGRSLAEDACHVDTNRD
LFQRVLTKWGRIQKQSISLAHKFVEFGLEMINAEKLKTKLQQMVSDSEWG
FALSEEIAEAGMASRFNNQTANDFFISNV*
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spliced messenger RNA

>Ggra10825.t1 ID=Ggra10825.t1|Name=Ggra10825.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=990bp|location=Sequence derived from alignment at tig00000192_pilon:173982..175382- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAAACTCACTACGCTTTTGTTGTGCACCCCGAAAACGGCGCTGTTCT
CACAGATACCAATAACAGTCTTCCAACCGTCTTACATGATGATATCACGG
CTAATTTGGACATCCTTTGTGCAAATGTGCGCACTGTTTTTCATGATGCT
TACCGCGTAATTCTTTTACGAACAGAGTGCGAAGTTCTCAAGAGTTCAGC
TAATCAAAGTGAAGATGACTCTTCCGAATACACAAGCAAGCTCCTCATCT
TTGAAATTGTGTCACAGGAGTCATTGACAGCTCCCAAAGGTTTTCTGTGG
ACTCCTAAGGAAACTGCGTCGCGTATTGTTGTGCAGCCCATGCTTCCCCA
AATCTTAGACTTCTTTCGAGAGTACGAAAAGGCGGGACTCTTGGTCAACA
TGGACCGTCTTCATCCGTATTCGCGTCCCGGATGGTTTAGAGATGCGGCT
TCTTGGATTAGAACTGTAGCGGCTTTCCACGACTTCTGTATCAAGGACAT
TCAACAGGTCACTAGCAAAACAGAAGGGTGTGTACTGCGCGTTAAAAGCA
CAGACGGCTCTTTTTACTTCAAACACGTTGGACCAAATATTCACTACGAC
GAAGTTCAAACTATACTGGTGCTTTCAAAAGTTTTGTCGAACGAGTTCAA
AAGTCCACTTGATGTAAATACCGACCGAAAATGGATGCTAATGAGGGACC
AGGGTCGAAGTCTCGCTGAAGATGCATGTCATGTGGATACAAATCGAGAT
CTCTTTCAACGGGTACTCACAAAATGGGGGAGAATTCAGAAGCAATCTAT
TTCATTGGCTCATAAGTTTGTTGAGTTTGGTTTAGAAATGATAAACGCAG
AGAAGCTGAAAACCAAGTTGCAACAAATGGTATCTGATTCGGAGTGGGGC
TTTGCGCTTTCTGAAGAAATTGCTGAAGCAGGAATGGCTTCTCGTTTTAA
CAACCAAACGGCTAATGATTTCTTCATCAGCAATGTCTGA
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protein sequence of Ggra10825.t1

>Ggra10825.t1 ID=Ggra10825.t1|Name=Ggra10825.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=330bp
METHYAFVVHPENGAVLTDTNNSLPTVLHDDITANLDILCANVRTVFHDA
YRVILLRTECEVLKSSANQSEDDSSEYTSKLLIFEIVSQESLTAPKGFLW
TPKETASRIVVQPMLPQILDFFREYEKAGLLVNMDRLHPYSRPGWFRDAA
SWIRTVAAFHDFCIKDIQQVTSKTEGCVLRVKSTDGSFYFKHVGPNIHYD
EVQTILVLSKVLSNEFKSPLDVNTDRKWMLMRDQGRSLAEDACHVDTNRD
LFQRVLTKWGRIQKQSISLAHKFVEFGLEMINAEKLKTKLQQMVSDSEWG
FALSEEIAEAGMASRFNNQTANDFFISNV*
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mRNA from alignment at tig00000192_pilon:173982..175382-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra10825.t1 ID=Ggra10825.t1|Name=Ggra10825.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1401bp|location=Sequence derived from alignment at tig00000192_pilon:173982..175382- (Gracilaria gracilis GNS1m male)
ATGGAAACTCACTACGCTTTTGTTGTGCACCCCGAAAACGGCGCTGTTCT
CACAGATACCAATAACAGTCTTCCAACCGTCTTACATGATGATATCACGG
CTAATTTGGACATCCTTTGTGCAAATGTGCGCACTGTTTTTCATGATGCT
TACCGCGTAATTCTTTTACGAACAGAGTGCGAAGTTCTCAAGAGTTCAGC
TAATCAAAGTGAAGATGACTCTTCCGAATACACAAGCAAGCTCCTCATCT
TTGAAATTGTGTCACAGGAGTCATTGACAGCTCCCAAAGGTTTTCTGTGG
ACTCCTAAGGAAACTGCGTCGCGTATTGTTGTGCAGCCCATGCTTCCCCA
AATCTTAGACTTCTTTCGAGAGTACGAAAAGGCGGGACTCTTGGTCAACA
TGGACCGTCTTCATCCGTATTCGCGTCCCGGATGGTTTAGAGATGCGGCT
TCTTGGATTAGAACTGTAGCGGCTTTCCACGACTTCTGTATCAAGGACAT
TCAACAGGTCACTAGCAAAACAGAAGGGTGTGTACTGCGCGTTAAAAGCA
CAGACGGCTCTTTTTACTTCAAACACGTTGGACCAAATATTCACTACGAC
GAAGTTCAAACTATACTGGTGCTTTCAAAAGTTTTGTCGAACGAGTTCAA
AAGTCCACTTGATGTAAATACCGACCGAAAATGGATGCTAATGAGGGACC
AGGGTCGAAGTCTCGCTGAAGATGCATGTCATGTGGATACAAATCGAGAT
CTCTTTCAACGGGTACTCACAAAATGGGGGAGAATTCAGAAGCAATCTAT
TTCATTGGCTCATAAGTTTGTTGAGTTTGGTTTAGAAATGATAAACGCAG
AGAAGCTGAAAACCAAGTTGCAACAAATGGTATCTGATTCGGAGTGGGGC
TTTGCGCTTTCTGAAGAAATTGCTGAAGCAGGAATGGCTTCTCGTTTTAA
CAACCAAACGGCTAATGATTTCTTCATCAGGTATGCAATGTCGTTATGCG
AAAAGGTATCAGAGTTTAATATCCCGTTAACGCTTGTACATGGAGACTTG
TGTCCAGTGAATGTAACACTCGATTCGAAGGATGAGATTGGTTTTATCGA
TTTTGGCTCAACATGCATCTCGGTCCCGTTCAGGGATGCGGTTTACTTCG
CAATAACATGTGGTGCGACGCAGGAAGACCTTCACTTTTATTTCGAGATG
TGGACGGAGTTCGAGAGCATGGAAAGGTTGAAGGAATTGTTTGAGGTCTT
CGACGAGTTTATACTGTTAGATTCGGTGTATGCGCTCTACAAAGAATACG
TCACTGCTGAACATACGCAAAGAATCTCTACATACGCGCACCTGCGTAAT
GCGATTCGCGTCTCATTGAGAATCCTAAAACCCGTGTGTAGCAATGTCTG
A
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Coding sequence (CDS) from alignment at tig00000192_pilon:173982..175382-

>Ggra10825.t1 ID=Ggra10825.t1|Name=Ggra10825.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=990bp|location=Sequence derived from alignment at tig00000192_pilon:173982..175382- (Gracilaria gracilis GNS1m male)
ATGGAAACTCACTACGCTTTTGTTGTGCACCCCGAAAACGGCGCTGTTCT
CACAGATACCAATAACAGTCTTCCAACCGTCTTACATGATGATATCACGG
CTAATTTGGACATCCTTTGTGCAAATGTGCGCACTGTTTTTCATGATGCT
TACCGCGTAATTCTTTTACGAACAGAGTGCGAAGTTCTCAAGAGTTCAGC
TAATCAAAGTGAAGATGACTCTTCCGAATACACAAGCAAGCTCCTCATCT
TTGAAATTGTGTCACAGGAGTCATTGACAGCTCCCAAAGGTTTTCTGTGG
ACTCCTAAGGAAACTGCGTCGCGTATTGTTGTGCAGCCCATGCTTCCCCA
AATCTTAGACTTCTTTCGAGAGTACGAAAAGGCGGGACTCTTGGTCAACA
TGGACCGTCTTCATCCGTATTCGCGTCCCGGATGGTTTAGAGATGCGGCT
TCTTGGATTAGAACTGTAGCGGCTTTCCACGACTTCTGTATCAAGGACAT
TCAACAGGTCACTAGCAAAACAGAAGGGTGTGTACTGCGCGTTAAAAGCA
CAGACGGCTCTTTTTACTTCAAACACGTTGGACCAAATATTCACTACGAC
GAAGTTCAAACTATACTGGTGCTTTCAAAAGTTTTGTCGAACGAGTTCAA
AAGTCCACTTGATGTAAATACCGACCGAAAATGGATGCTAATGAGGGACC
AGGGTCGAAGTCTCGCTGAAGATGCATGTCATGTGGATACAAATCGAGAT
CTCTTTCAACGGGTACTCACAAAATGGGGGAGAATTCAGAAGCAATCTAT
TTCATTGGCTCATAAGTTTGTTGAGTTTGGTTTAGAAATGATAAACGCAG
AGAAGCTGAAAACCAAGTTGCAACAAATGGTATCTGATTCGGAGTGGGGC
TTTGCGCTTTCTGAAGAAATTGCTGAAGCAGGAATGGCTTCTCGTTTTAA
CAACCAAACGGCTAATGATTTCTTCATCAGCAATGTCTGA
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