Ggra10815.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra10815.t1
Unique Name	Ggra10815.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	501

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000192_pilon	contig	tig00000192_pilon:29536..31038 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	1238450.VIBNISOn1_1430028
Max annot lvl	135623\|Vibrionales
Evalue	4.24e-143
EggNOG OGs	COG0543@1\|root,COG0543@2\|Bacteria,1PGWQ@1224\|Proteobacteria,1RV2N@1236\|Gammaproteobacteria,1XU9U@135623\|Vibrionales
Description	2 iron, 2 sulfur cluster binding
COG category	CH

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra10815	Ggra10815	Gracilaria gracilis GNS1m male	gene	tig00000192_pilon 29536..31038 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra10815.t1.start1	Ggra10815.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000192_pilon 29536..29538 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra10815.t1.CDS1	Ggra10815.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000192_pilon 29536..31038 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra10815.t1.exon1	Ggra10815.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000192_pilon 29536..31038 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra10815.t1.stop1	Ggra10815.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000192_pilon 31036..31038 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra10815.t1	Ggra10815.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000192_pilon 29536..31038 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000192_pilon:29536..31038+
coding sequence from alignment at tig00000192_pilon:29536..31038+

mRNA sequence

>Ggra10815.t1 ID=Ggra10815.t1|Name=Ggra10815.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=501bp
MNSVAIVLPPPVAKAASRESSNSSINSTVDTVDTIELSKAANIQHTPTHS
SEGHPLQPEEDPQNYKLPVKRPKHKRIFHLPVLSTHRRLIALTVLTNLAL
LALAIALGWHDNLPAIGYLVISNITVAVLIRQQRVINLLFFLATCTNTRL
PLKARWMLGKIYHFGGLHSACAVSATVWLVLFSISATVLRATNSTSAPSE
MLLMLTYFIDVLLVTIVILALPRLRSTFHNTFEATHRFLGWTAVFFVWLH
TVFLIRDFKQPTQSLARAFFTSVSPYLLAIITLSIISPWLYLRKVPVSIT
KPSNHAIIVNFEEGVLNAFPGSSSAISVAPLYEWHSFANITTPGKHGFRL
VISRAGDWTSSVIDNPPTHFWVRGIPTAGVANMETLFRKILYVATGSGIG
PILPHLLQKRVPSRLFWSTRTPESTYGRDLVEEIITASPDAVIHDTTLLG
KPDMVQKTYQLCMESGAEAIIVISNQKLTRKVVYGMEARGIPAFGAIWDS
*

spliced messenger RNA

>Ggra10815.t1 ID=Ggra10815.t1|Name=Ggra10815.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1503bp|location=Sequence derived from alignment at tig00000192_pilon:29536..31038+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAACTCCGTCGCCATTGTGCTACCACCTCCGGTGGCTAAAGCCGCTTC
TCGTGAATCATCAAACTCATCTATCAACTCCACAGTCGATACCGTAGACA
CCATTGAGCTGAGCAAAGCAGCTAACATCCAACACACGCCCACACACTCC
TCCGAAGGCCACCCACTACAGCCCGAAGAAGACCCCCAAAACTACAAGCT
CCCAGTGAAGCGCCCAAAGCACAAAAGGATTTTCCATCTCCCCGTTTTGT
CCACACATCGCCGTCTTATCGCTCTCACTGTCCTAACAAACCTCGCCCTT
CTCGCCCTCGCCATTGCGCTCGGGTGGCACGACAACTTGCCTGCGATCGG
TTATCTCGTCATCTCCAACATCACCGTAGCTGTTCTCATCCGCCAGCAAA
GAGTGATCAATCTTCTCTTCTTCCTTGCCACATGTACAAACACACGTCTC
CCACTCAAAGCCCGCTGGATGTTGGGAAAAATTTACCACTTTGGTGGATT
GCATAGTGCGTGTGCTGTTTCTGCAACTGTTTGGTTAGTCCTGTTCAGTA
TCTCGGCAACAGTTCTGCGAGCAACAAACTCCACGAGTGCTCCCTCCGAG
ATGCTGCTCATGCTCACGTACTTCATCGATGTACTTCTTGTAACCATTGT
GATCCTAGCGCTTCCGAGATTACGATCCACATTTCACAACACCTTCGAGG
CCACTCATCGCTTCCTGGGTTGGACCGCCGTGTTTTTCGTATGGCTGCAC
ACTGTTTTCCTTATCCGCGATTTCAAGCAGCCCACCCAGTCACTCGCCCG
CGCATTCTTCACGAGCGTCTCACCGTACTTGCTGGCCATTATCACGCTTT
CCATAATATCACCGTGGCTATACCTTCGAAAGGTTCCGGTTTCGATAACC
AAGCCTTCAAATCATGCTATCATTGTAAACTTTGAAGAAGGCGTTCTAAA
CGCTTTTCCTGGGTCATCGTCGGCAATTTCAGTGGCACCGCTCTACGAGT
GGCACTCATTTGCAAACATAACCACCCCCGGGAAACACGGCTTCCGCCTC
GTCATTTCACGTGCGGGTGATTGGACTTCATCGGTTATTGACAACCCACC
AACACATTTCTGGGTCCGTGGCATTCCAACGGCTGGGGTGGCGAACATGG
AAACCTTGTTCCGCAAAATACTTTATGTTGCGACTGGTTCAGGGATTGGT
CCCATACTACCACACCTGCTGCAGAAGAGAGTTCCTTCTCGGCTATTCTG
GTCCACTCGAACCCCAGAAAGTACGTATGGGCGGGACCTTGTTGAAGAAA
TCATTACTGCGAGCCCCGACGCAGTTATTCACGACACCACGCTGCTTGGC
AAACCAGATATGGTTCAGAAGACATATCAACTTTGTATGGAGAGCGGTGC
GGAGGCGATTATCGTAATCTCGAACCAAAAATTAACTAGAAAGGTCGTTT
ACGGCATGGAAGCCCGAGGTATACCTGCGTTTGGTGCCATTTGGGACTCA
TAA

protein sequence of Ggra10815.t1

>Ggra10815.t1 ID=Ggra10815.t1|Name=Ggra10815.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=501bp
MNSVAIVLPPPVAKAASRESSNSSINSTVDTVDTIELSKAANIQHTPTHS
SEGHPLQPEEDPQNYKLPVKRPKHKRIFHLPVLSTHRRLIALTVLTNLAL
LALAIALGWHDNLPAIGYLVISNITVAVLIRQQRVINLLFFLATCTNTRL
PLKARWMLGKIYHFGGLHSACAVSATVWLVLFSISATVLRATNSTSAPSE
MLLMLTYFIDVLLVTIVILALPRLRSTFHNTFEATHRFLGWTAVFFVWLH
TVFLIRDFKQPTQSLARAFFTSVSPYLLAIITLSIISPWLYLRKVPVSIT
KPSNHAIIVNFEEGVLNAFPGSSSAISVAPLYEWHSFANITTPGKHGFRL
VISRAGDWTSSVIDNPPTHFWVRGIPTAGVANMETLFRKILYVATGSGIG
PILPHLLQKRVPSRLFWSTRTPESTYGRDLVEEIITASPDAVIHDTTLLG
KPDMVQKTYQLCMESGAEAIIVISNQKLTRKVVYGMEARGIPAFGAIWDS
*

mRNA from alignment at tig00000192_pilon:29536..31038+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra10815.t1 ID=Ggra10815.t1|Name=Ggra10815.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1503bp|location=Sequence derived from alignment at tig00000192_pilon:29536..31038+ (Gracilaria gracilis GNS1m male)
ATGAACTCCGTCGCCATTGTGCTACCACCTCCGGTGGCTAAAGCCGCTTC
TCGTGAATCATCAAACTCATCTATCAACTCCACAGTCGATACCGTAGACA
CCATTGAGCTGAGCAAAGCAGCTAACATCCAACACACGCCCACACACTCC
TCCGAAGGCCACCCACTACAGCCCGAAGAAGACCCCCAAAACTACAAGCT
CCCAGTGAAGCGCCCAAAGCACAAAAGGATTTTCCATCTCCCCGTTTTGT
CCACACATCGCCGTCTTATCGCTCTCACTGTCCTAACAAACCTCGCCCTT
CTCGCCCTCGCCATTGCGCTCGGGTGGCACGACAACTTGCCTGCGATCGG
TTATCTCGTCATCTCCAACATCACCGTAGCTGTTCTCATCCGCCAGCAAA
GAGTGATCAATCTTCTCTTCTTCCTTGCCACATGTACAAACACACGTCTC
CCACTCAAAGCCCGCTGGATGTTGGGAAAAATTTACCACTTTGGTGGATT
GCATAGTGCGTGTGCTGTTTCTGCAACTGTTTGGTTAGTCCTGTTCAGTA
TCTCGGCAACAGTTCTGCGAGCAACAAACTCCACGAGTGCTCCCTCCGAG
ATGCTGCTCATGCTCACGTACTTCATCGATGTACTTCTTGTAACCATTGT
GATCCTAGCGCTTCCGAGATTACGATCCACATTTCACAACACCTTCGAGG
CCACTCATCGCTTCCTGGGTTGGACCGCCGTGTTTTTCGTATGGCTGCAC
ACTGTTTTCCTTATCCGCGATTTCAAGCAGCCCACCCAGTCACTCGCCCG
CGCATTCTTCACGAGCGTCTCACCGTACTTGCTGGCCATTATCACGCTTT
CCATAATATCACCGTGGCTATACCTTCGAAAGGTTCCGGTTTCGATAACC
AAGCCTTCAAATCATGCTATCATTGTAAACTTTGAAGAAGGCGTTCTAAA
CGCTTTTCCTGGGTCATCGTCGGCAATTTCAGTGGCACCGCTCTACGAGT
GGCACTCATTTGCAAACATAACCACCCCCGGGAAACACGGCTTCCGCCTC
GTCATTTCACGTGCGGGTGATTGGACTTCATCGGTTATTGACAACCCACC
AACACATTTCTGGGTCCGTGGCATTCCAACGGCTGGGGTGGCGAACATGG
AAACCTTGTTCCGCAAAATACTTTATGTTGCGACTGGTTCAGGGATTGGT
CCCATACTACCACACCTGCTGCAGAAGAGAGTTCCTTCTCGGCTATTCTG
GTCCACTCGAACCCCAGAAAGTACGTATGGGCGGGACCTTGTTGAAGAAA
TCATTACTGCGAGCCCCGACGCAGTTATTCACGACACCACGCTGCTTGGC
AAACCAGATATGGTTCAGAAGACATATCAACTTTGTATGGAGAGCGGTGC
GGAGGCGATTATCGTAATCTCGAACCAAAAATTAACTAGAAAGGTCGTTT
ACGGCATGGAAGCCCGAGGTATACCTGCGTTTGGTGCCATTTGGGACTCA
TAA

Coding sequence (CDS) from alignment at tig00000192_pilon:29536..31038+

>Ggra10815.t1 ID=Ggra10815.t1|Name=Ggra10815.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1503bp|location=Sequence derived from alignment at tig00000192_pilon:29536..31038+ (Gracilaria gracilis GNS1m male)
ATGAACTCCGTCGCCATTGTGCTACCACCTCCGGTGGCTAAAGCCGCTTC
TCGTGAATCATCAAACTCATCTATCAACTCCACAGTCGATACCGTAGACA
CCATTGAGCTGAGCAAAGCAGCTAACATCCAACACACGCCCACACACTCC
TCCGAAGGCCACCCACTACAGCCCGAAGAAGACCCCCAAAACTACAAGCT
CCCAGTGAAGCGCCCAAAGCACAAAAGGATTTTCCATCTCCCCGTTTTGT
CCACACATCGCCGTCTTATCGCTCTCACTGTCCTAACAAACCTCGCCCTT
CTCGCCCTCGCCATTGCGCTCGGGTGGCACGACAACTTGCCTGCGATCGG
TTATCTCGTCATCTCCAACATCACCGTAGCTGTTCTCATCCGCCAGCAAA
GAGTGATCAATCTTCTCTTCTTCCTTGCCACATGTACAAACACACGTCTC
CCACTCAAAGCCCGCTGGATGTTGGGAAAAATTTACCACTTTGGTGGATT
GCATAGTGCGTGTGCTGTTTCTGCAACTGTTTGGTTAGTCCTGTTCAGTA
TCTCGGCAACAGTTCTGCGAGCAACAAACTCCACGAGTGCTCCCTCCGAG
ATGCTGCTCATGCTCACGTACTTCATCGATGTACTTCTTGTAACCATTGT
GATCCTAGCGCTTCCGAGATTACGATCCACATTTCACAACACCTTCGAGG
CCACTCATCGCTTCCTGGGTTGGACCGCCGTGTTTTTCGTATGGCTGCAC
ACTGTTTTCCTTATCCGCGATTTCAAGCAGCCCACCCAGTCACTCGCCCG
CGCATTCTTCACGAGCGTCTCACCGTACTTGCTGGCCATTATCACGCTTT
CCATAATATCACCGTGGCTATACCTTCGAAAGGTTCCGGTTTCGATAACC
AAGCCTTCAAATCATGCTATCATTGTAAACTTTGAAGAAGGCGTTCTAAA
CGCTTTTCCTGGGTCATCGTCGGCAATTTCAGTGGCACCGCTCTACGAGT
GGCACTCATTTGCAAACATAACCACCCCCGGGAAACACGGCTTCCGCCTC
GTCATTTCACGTGCGGGTGATTGGACTTCATCGGTTATTGACAACCCACC
AACACATTTCTGGGTCCGTGGCATTCCAACGGCTGGGGTGGCGAACATGG
AAACCTTGTTCCGCAAAATACTTTATGTTGCGACTGGTTCAGGGATTGGT
CCCATACTACCACACCTGCTGCAGAAGAGAGTTCCTTCTCGGCTATTCTG
GTCCACTCGAACCCCAGAAAGTACGTATGGGCGGGACCTTGTTGAAGAAA
TCATTACTGCGAGCCCCGACGCAGTTATTCACGACACCACGCTGCTTGGC
AAACCAGATATGGTTCAGAAGACATATCAACTTTGTATGGAGAGCGGTGC
GGAGGCGATTATCGTAATCTCGAACCAAAAATTAACTAGAAAGGTCGTTT
ACGGCATGGAAGCCCGAGGTATACCTGCGTTTGGTGCCATTTGGGACTCA
TAA