Ggra10808.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra10808.t1
Unique Name	Ggra10808.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	393

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000192_pilon	contig	tig00000192_pilon:10733..11911 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra10808	Ggra10808	Gracilaria gracilis GNS1m male	gene	tig00000192_pilon 10733..11911 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra10808.t1.start1	Ggra10808.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000192_pilon 10733..10735 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra10808.t1.CDS1	Ggra10808.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000192_pilon 10733..11911 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra10808.t1.exon1	Ggra10808.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000192_pilon 10733..11911 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra10808.t1.stop1	Ggra10808.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000192_pilon 11909..11911 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra10808.t1	Ggra10808.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000192_pilon 10733..11911 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000192_pilon:10733..11911+
coding sequence from alignment at tig00000192_pilon:10733..11911+

mRNA sequence

>Ggra10808.t1 ID=Ggra10808.t1|Name=Ggra10808.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=393bp
MSASSSSGESDVSSHMSVGELALFSVRFAPDGVHYENEYMAQTVQNLDDI
PHFMAAKRYEALPSEEYKALNDSICKIWSAFLATDFRVNGDKSCVNDAVG
HSTYSNVDAGDGMLARVSETCAIKGRIVGPDDAYPHLTKVVSDERCDVVQ
LRTGVTYIIHGDSEGDARPARSQMYILNLRESLLRLGITEFCHPPYSHRV
WSIKGSRLVGTMNNALGRLCNEHCAAQCDNVGCLNGQKRAVKYMYVKSDN
PLKVYDFGTRYDPLGAKYAQQHDDLRKVLKKANPARVTRKRLLRTLMVFK
RLQQTLSANKCWVLPGNGDEGTFNPGEPFLKANATYLWDLYPHDADGDAV
SLWDGGKVRVTTYGQVAHVCTKNGSLLDPGTQNFAWAGHVER*

spliced messenger RNA

>Ggra10808.t1 ID=Ggra10808.t1|Name=Ggra10808.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1179bp|location=Sequence derived from alignment at tig00000192_pilon:10733..11911+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGTGCTTCGTCAAGTTCTGGTGAAAGCGACGTATCGTCGCACATGTC
TGTAGGCGAGCTGGCGCTCTTTTCAGTGAGATTCGCACCCGATGGGGTGC
ACTACGAAAATGAGTACATGGCTCAAACCGTGCAGAACCTCGACGATATT
CCACACTTCATGGCCGCCAAACGTTATGAGGCACTACCCTCAGAAGAATA
TAAAGCGCTCAACGACTCGATCTGCAAGATTTGGAGCGCGTTTCTTGCCA
CCGACTTTAGAGTGAACGGCGACAAGTCTTGCGTGAATGACGCAGTTGGC
CACAGCACGTATTCGAATGTTGACGCCGGAGACGGCATGTTAGCAAGGGT
GTCAGAGACTTGCGCCATCAAAGGGCGAATTGTTGGTCCAGATGATGCGT
ATCCGCATCTGACCAAAGTTGTGTCAGATGAGAGGTGCGATGTGGTGCAA
TTGAGAACCGGAGTGACGTACATTATTCACGGAGACTCTGAAGGTGACGC
TCGGCCAGCTCGCTCTCAAATGTACATACTCAATCTCCGTGAGAGTCTTT
TGCGTCTAGGTATCACTGAGTTTTGTCATCCGCCATATTCGCACAGAGTG
TGGAGCATAAAGGGAAGTAGACTTGTTGGAACCATGAACAACGCGCTGGG
ACGGCTTTGCAACGAGCACTGCGCTGCACAGTGTGACAACGTAGGGTGCC
TCAACGGACAAAAGCGGGCCGTCAAGTATATGTACGTGAAGAGCGACAAC
CCTCTAAAGGTATACGATTTTGGTACGAGATATGATCCGTTGGGGGCAAA
GTATGCTCAGCAGCACGACGATTTACGAAAAGTGCTAAAGAAGGCAAACC
CAGCTCGAGTAACTCGAAAGAGGCTTTTGCGGACTTTGATGGTCTTCAAG
AGACTTCAACAAACGCTTTCGGCCAACAAATGTTGGGTGCTTCCAGGCAA
CGGCGACGAGGGAACATTCAACCCCGGGGAGCCTTTCTTGAAGGCGAACG
CGACGTACTTGTGGGATCTGTATCCGCATGATGCGGACGGGGATGCGGTG
TCGCTGTGGGACGGTGGAAAAGTGCGAGTTACTACATATGGACAAGTGGC
TCATGTTTGCACGAAAAACGGATCACTTCTTGATCCGGGAACGCAGAACT
TTGCATGGGCGGGACACGTAGAGCGGTGA

protein sequence of Ggra10808.t1

>Ggra10808.t1 ID=Ggra10808.t1|Name=Ggra10808.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=393bp
MSASSSSGESDVSSHMSVGELALFSVRFAPDGVHYENEYMAQTVQNLDDI
PHFMAAKRYEALPSEEYKALNDSICKIWSAFLATDFRVNGDKSCVNDAVG
HSTYSNVDAGDGMLARVSETCAIKGRIVGPDDAYPHLTKVVSDERCDVVQ
LRTGVTYIIHGDSEGDARPARSQMYILNLRESLLRLGITEFCHPPYSHRV
WSIKGSRLVGTMNNALGRLCNEHCAAQCDNVGCLNGQKRAVKYMYVKSDN
PLKVYDFGTRYDPLGAKYAQQHDDLRKVLKKANPARVTRKRLLRTLMVFK
RLQQTLSANKCWVLPGNGDEGTFNPGEPFLKANATYLWDLYPHDADGDAV
SLWDGGKVRVTTYGQVAHVCTKNGSLLDPGTQNFAWAGHVER*

mRNA from alignment at tig00000192_pilon:10733..11911+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra10808.t1 ID=Ggra10808.t1|Name=Ggra10808.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1179bp|location=Sequence derived from alignment at tig00000192_pilon:10733..11911+ (Gracilaria gracilis GNS1m male)
ATGAGTGCTTCGTCAAGTTCTGGTGAAAGCGACGTATCGTCGCACATGTC
TGTAGGCGAGCTGGCGCTCTTTTCAGTGAGATTCGCACCCGATGGGGTGC
ACTACGAAAATGAGTACATGGCTCAAACCGTGCAGAACCTCGACGATATT
CCACACTTCATGGCCGCCAAACGTTATGAGGCACTACCCTCAGAAGAATA
TAAAGCGCTCAACGACTCGATCTGCAAGATTTGGAGCGCGTTTCTTGCCA
CCGACTTTAGAGTGAACGGCGACAAGTCTTGCGTGAATGACGCAGTTGGC
CACAGCACGTATTCGAATGTTGACGCCGGAGACGGCATGTTAGCAAGGGT
GTCAGAGACTTGCGCCATCAAAGGGCGAATTGTTGGTCCAGATGATGCGT
ATCCGCATCTGACCAAAGTTGTGTCAGATGAGAGGTGCGATGTGGTGCAA
TTGAGAACCGGAGTGACGTACATTATTCACGGAGACTCTGAAGGTGACGC
TCGGCCAGCTCGCTCTCAAATGTACATACTCAATCTCCGTGAGAGTCTTT
TGCGTCTAGGTATCACTGAGTTTTGTCATCCGCCATATTCGCACAGAGTG
TGGAGCATAAAGGGAAGTAGACTTGTTGGAACCATGAACAACGCGCTGGG
ACGGCTTTGCAACGAGCACTGCGCTGCACAGTGTGACAACGTAGGGTGCC
TCAACGGACAAAAGCGGGCCGTCAAGTATATGTACGTGAAGAGCGACAAC
CCTCTAAAGGTATACGATTTTGGTACGAGATATGATCCGTTGGGGGCAAA
GTATGCTCAGCAGCACGACGATTTACGAAAAGTGCTAAAGAAGGCAAACC
CAGCTCGAGTAACTCGAAAGAGGCTTTTGCGGACTTTGATGGTCTTCAAG
AGACTTCAACAAACGCTTTCGGCCAACAAATGTTGGGTGCTTCCAGGCAA
CGGCGACGAGGGAACATTCAACCCCGGGGAGCCTTTCTTGAAGGCGAACG
CGACGTACTTGTGGGATCTGTATCCGCATGATGCGGACGGGGATGCGGTG
TCGCTGTGGGACGGTGGAAAAGTGCGAGTTACTACATATGGACAAGTGGC
TCATGTTTGCACGAAAAACGGATCACTTCTTGATCCGGGAACGCAGAACT
TTGCATGGGCGGGACACGTAGAGCGGTGA

Coding sequence (CDS) from alignment at tig00000192_pilon:10733..11911+

>Ggra10808.t1 ID=Ggra10808.t1|Name=Ggra10808.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1179bp|location=Sequence derived from alignment at tig00000192_pilon:10733..11911+ (Gracilaria gracilis GNS1m male)
ATGAGTGCTTCGTCAAGTTCTGGTGAAAGCGACGTATCGTCGCACATGTC
TGTAGGCGAGCTGGCGCTCTTTTCAGTGAGATTCGCACCCGATGGGGTGC
ACTACGAAAATGAGTACATGGCTCAAACCGTGCAGAACCTCGACGATATT
CCACACTTCATGGCCGCCAAACGTTATGAGGCACTACCCTCAGAAGAATA
TAAAGCGCTCAACGACTCGATCTGCAAGATTTGGAGCGCGTTTCTTGCCA
CCGACTTTAGAGTGAACGGCGACAAGTCTTGCGTGAATGACGCAGTTGGC
CACAGCACGTATTCGAATGTTGACGCCGGAGACGGCATGTTAGCAAGGGT
GTCAGAGACTTGCGCCATCAAAGGGCGAATTGTTGGTCCAGATGATGCGT
ATCCGCATCTGACCAAAGTTGTGTCAGATGAGAGGTGCGATGTGGTGCAA
TTGAGAACCGGAGTGACGTACATTATTCACGGAGACTCTGAAGGTGACGC
TCGGCCAGCTCGCTCTCAAATGTACATACTCAATCTCCGTGAGAGTCTTT
TGCGTCTAGGTATCACTGAGTTTTGTCATCCGCCATATTCGCACAGAGTG
TGGAGCATAAAGGGAAGTAGACTTGTTGGAACCATGAACAACGCGCTGGG
ACGGCTTTGCAACGAGCACTGCGCTGCACAGTGTGACAACGTAGGGTGCC
TCAACGGACAAAAGCGGGCCGTCAAGTATATGTACGTGAAGAGCGACAAC
CCTCTAAAGGTATACGATTTTGGTACGAGATATGATCCGTTGGGGGCAAA
GTATGCTCAGCAGCACGACGATTTACGAAAAGTGCTAAAGAAGGCAAACC
CAGCTCGAGTAACTCGAAAGAGGCTTTTGCGGACTTTGATGGTCTTCAAG
AGACTTCAACAAACGCTTTCGGCCAACAAATGTTGGGTGCTTCCAGGCAA
CGGCGACGAGGGAACATTCAACCCCGGGGAGCCTTTCTTGAAGGCGAACG
CGACGTACTTGTGGGATCTGTATCCGCATGATGCGGACGGGGATGCGGTG
TCGCTGTGGGACGGTGGAAAAGTGCGAGTTACTACATATGGACAAGTGGC
TCATGTTTGCACGAAAAACGGATCACTTCTTGATCCGGGAACGCAGAACT
TTGCATGGGCGGGACACGTAGAGCGGTGA