Ggra10794.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra10794.t1
Unique NameGgra10794.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length380
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000225_piloncontigtig00000225_pilon:99161..100993 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog2850.Phatr38124
PFAMsGST_N_3,Glutaredoxin2_C
Max annot lvl2836|Bacillariophyta
Evalue2.49e-46
EggNOG OGsCOG2999@1|root,2RYF1@2759|Eukaryota,2XBI3@2836|Bacillariophyta
DescriptionGlutathione S-transferase, N-terminal domain
COG categoryO
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra10794Ggra10794Gracilaria gracilis GNS1m malegenetig00000225_pilon 99161..100993 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10794.t1Ggra10794.t1Gracilaria gracilis GNS1m malepolypeptidetig00000225_pilon 99161..100993 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10794.t1.stop1Ggra10794.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000225_pilon 99161..99163 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10794.t1.CDS1Ggra10794.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000225_pilon 99161..99766 -
Ggra10794.t1.CDS2Ggra10794.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000225_pilon 100460..100993 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10794.t1.exon1Ggra10794.t1.exon1Gracilaria gracilis GNS1m maleexontig00000225_pilon 99161..99766 -
Ggra10794.t1.exon2Ggra10794.t1.exon2Gracilaria gracilis GNS1m maleexontig00000225_pilon 100460..100993 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10794.t1.intron1Ggra10794.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000225_pilon 99767..100459 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10794.t1.start1Ggra10794.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000225_pilon 100991..100993 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra10794.t1 ID=Ggra10794.t1|Name=Ggra10794.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=380bp
MHGDGIRKRRKWEKVWLVFKVALGLFVIGVEIATLVFSWATQNAAQNWSS
FFTWLDASVALSSSVQECESRKEFFCSAARSVYVVTGLMGTATAFHPKQA
RWKWLLVSMVLISIATMVFVVLYFVKSYRRWRRFDQLGRDRWAYYASRAS
LLRPLSRQDMRRLLEWYNVRRGERDIELNVKHNLVWLANDDVATPTALVG
RKIVPIFQPLGAGADALAESLDICAAVDADARFGQPGLLRPLSARADVAQ
WMEQLAMPMRRLTRVRFSRAPLPEFVFADAREAYVRNHPLKEPAEYEQNW
ARSDEYIAPIQARIQELADMIHSPYHCSPGGLSYDDIVLFPRLRAMTIIK
GLTLPSAIRDYLEYHSAASEIPLYDYCAM*
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spliced messenger RNA

>Ggra10794.t1 ID=Ggra10794.t1|Name=Ggra10794.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1140bp|location=Sequence derived from alignment at tig00000225_pilon:99161..100993- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCACGGGGACGGCATACGGAAACGACGCAAGTGGGAAAAAGTATGGCT
CGTTTTCAAGGTAGCACTGGGTCTGTTTGTGATCGGGGTGGAGATCGCGA
CGCTTGTATTCTCATGGGCGACACAAAACGCGGCACAAAACTGGAGCTCA
TTCTTCACGTGGCTCGACGCCTCGGTGGCGCTGTCGTCGTCCGTGCAGGA
GTGTGAGTCGCGGAAAGAGTTTTTCTGTTCGGCGGCGAGAAGCGTGTACG
TGGTGACGGGGCTTATGGGTACGGCCACGGCTTTTCACCCGAAGCAGGCA
CGTTGGAAGTGGTTGCTGGTTTCCATGGTGCTGATCAGCATCGCCACCAT
GGTGTTTGTAGTGTTGTACTTCGTCAAGTCGTACAGAAGGTGGAGGCGTT
TCGACCAACTTGGGCGCGATCGGTGGGCGTACTACGCTTCGAGGGCTTCG
CTGTTGAGGCCGCTCAGCAGACAAGATATGCGGCGTCTCTTGGAGTGGTA
CAACGTGCGACGCGGAGAGCGCGACATCGAGTTGAACGTCAAGCACAACC
TGGTATGGCTGGCGAACGACGACGTCGCCACGCCGACCGCGCTGGTCGGC
CGCAAGATCGTGCCCATCTTCCAGCCGCTCGGCGCCGGCGCCGACGCCCT
CGCGGAGAGCCTGGACATCTGCGCCGCCGTGGACGCCGACGCGCGTTTCG
GGCAGCCCGGCTTGCTCCGGCCGCTTTCGGCGCGCGCGGATGTGGCGCAG
TGGATGGAACAGCTGGCAATGCCGATGCGACGCCTCACACGCGTGCGCTT
CTCGCGCGCGCCGCTGCCCGAGTTTGTGTTTGCCGACGCGAGGGAGGCGT
ACGTGAGGAATCACCCGTTGAAGGAGCCCGCGGAGTACGAGCAGAACTGG
GCGAGGTCGGATGAGTACATCGCGCCGATTCAGGCCCGCATTCAGGAATT
GGCTGATATGATCCACTCGCCGTACCACTGCTCGCCCGGCGGCTTGTCGT
ATGATGACATTGTTTTGTTCCCGCGCTTGCGCGCAATGACCATTATCAAG
GGCTTGACGCTTCCGTCCGCCATCCGAGACTACTTGGAGTATCACTCTGC
TGCGTCCGAGATTCCGTTGTACGACTATTGCGCCATGTGA
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protein sequence of Ggra10794.t1

>Ggra10794.t1 ID=Ggra10794.t1|Name=Ggra10794.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=380bp
MHGDGIRKRRKWEKVWLVFKVALGLFVIGVEIATLVFSWATQNAAQNWSS
FFTWLDASVALSSSVQECESRKEFFCSAARSVYVVTGLMGTATAFHPKQA
RWKWLLVSMVLISIATMVFVVLYFVKSYRRWRRFDQLGRDRWAYYASRAS
LLRPLSRQDMRRLLEWYNVRRGERDIELNVKHNLVWLANDDVATPTALVG
RKIVPIFQPLGAGADALAESLDICAAVDADARFGQPGLLRPLSARADVAQ
WMEQLAMPMRRLTRVRFSRAPLPEFVFADAREAYVRNHPLKEPAEYEQNW
ARSDEYIAPIQARIQELADMIHSPYHCSPGGLSYDDIVLFPRLRAMTIIK
GLTLPSAIRDYLEYHSAASEIPLYDYCAM*
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mRNA from alignment at tig00000225_pilon:99161..100993-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra10794.t1 ID=Ggra10794.t1|Name=Ggra10794.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1833bp|location=Sequence derived from alignment at tig00000225_pilon:99161..100993- (Gracilaria gracilis GNS1m male)
ATGCACGGGGACGGCATACGGAAACGACGCAAGTGGGAAAAAGTATGGCT
CGTTTTCAAGGTAGCACTGGGTCTGTTTGTGATCGGGGTGGAGATCGCGA
CGCTTGTATTCTCATGGGCGACACAAAACGCGGCACAAAACTGGAGCTCA
TTCTTCACGTGGCTCGACGCCTCGGTGGCGCTGTCGTCGTCCGTGCAGGA
GTGTGAGTCGCGGAAAGAGTTTTTCTGTTCGGCGGCGAGAAGCGTGTACG
TGGTGACGGGGCTTATGGGTACGGCCACGGCTTTTCACCCGAAGCAGGCA
CGTTGGAAGTGGTTGCTGGTTTCCATGGTGCTGATCAGCATCGCCACCAT
GGTGTTTGTAGTGTTGTACTTCGTCAAGTCGTACAGAAGGTGGAGGCGTT
TCGACCAACTTGGGCGCGATCGGTGGGCGTACTACGCTTCGAGGGCTTCG
CTGTTGAGGCCGCTCAGCAGACAAGATATGCGGCGTCTCTTGGAGTGGTA
CAACGTGCGACGCGGAGAGCGCGACATCGAGTTGGTGAGCTCTGGGATCG
CCTAAGATCAGGCATGTTGTGCTTGCCAGACAGCCGGGCAGCAGTTTCGG
CAACAGAGAGTGATAACAGTTGATGTTTGGCCAAGTTGTAAGCAACACTT
GTGTGAGTTGAATTAATTGACAACCGATACTGGATCGGACTCCTTTCACT
CGCCGATAAACAGAATATGTACGCCTCGCAAAGTTGTAGCATTCCCTTCA
ATTCCGTTCACTTTCCGTCTCCATCATCTGTGGTTTCCCAATCTCTGAAA
CAAACCATCTCAATTGAATGAAAATATTATGAAACACAGGCACATTTAGA
CAGTTTTGGAGCCCAAAATTGGCTTTCACGGACAACATGATTTAGGGGGC
TCCACGGTTGCCACGTGTGCCGAGCTCGAGTGCGATTGCTCATCTGGCGC
ATCTCGCTGCTGACGTACAATAGATACCGAGATGCGCTGCCGCTCCCCCT
CCCCCGGATCGCGATTACCGACCGTCATGGCGTTCGTTGCACCCACCGCG
CTCCCCCGCCGCGCCGCGTCGCCGCGCGCGCGCGCCGCCGTCTCCTCGTC
CGCGCCGCGTGCCACCGCCTCCGCGCCCGCGCGTCCGGCGCGCGTGGTGC
CCGCGCCGCTGCCCGCGCTGTACGTGTACGACCACTGCCCGTTCTGCGTG
CGCGTGCGCCACCTACTGGGGCTCAAGAACGTCAAGCACAACCTGGTATG
GCTGGCGAACGACGACGTCGCCACGCCGACCGCGCTGGTCGGCCGCAAGA
TCGTGCCCATCTTCCAGCCGCTCGGCGCCGGCGCCGACGCCCTCGCGGAG
AGCCTGGACATCTGCGCCGCCGTGGACGCCGACGCGCGTTTCGGGCAGCC
CGGCTTGCTCCGGCCGCTTTCGGCGCGCGCGGATGTGGCGCAGTGGATGG
AACAGCTGGCAATGCCGATGCGACGCCTCACACGCGTGCGCTTCTCGCGC
GCGCCGCTGCCCGAGTTTGTGTTTGCCGACGCGAGGGAGGCGTACGTGAG
GAATCACCCGTTGAAGGAGCCCGCGGAGTACGAGCAGAACTGGGCGAGGT
CGGATGAGTACATCGCGCCGATTCAGGCCCGCATTCAGGAATTGGCTGAT
ATGATCCACTCGCCGTACCACTGCTCGCCCGGCGGCTTGTCGTATGATGA
CATTGTTTTGTTCCCGCGCTTGCGCGCAATGACCATTATCAAGGGCTTGA
CGCTTCCGTCCGCCATCCGAGACTACTTGGAGTATCACTCTGCTGCGTCC
GAGATTCCGTTGTACGACTATTGCGCCATGTGA
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Coding sequence (CDS) from alignment at tig00000225_pilon:99161..100993-

>Ggra10794.t1 ID=Ggra10794.t1|Name=Ggra10794.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1140bp|location=Sequence derived from alignment at tig00000225_pilon:99161..100993- (Gracilaria gracilis GNS1m male)
ATGCACGGGGACGGCATACGGAAACGACGCAAGTGGGAAAAAGTATGGCT
CGTTTTCAAGGTAGCACTGGGTCTGTTTGTGATCGGGGTGGAGATCGCGA
CGCTTGTATTCTCATGGGCGACACAAAACGCGGCACAAAACTGGAGCTCA
TTCTTCACGTGGCTCGACGCCTCGGTGGCGCTGTCGTCGTCCGTGCAGGA
GTGTGAGTCGCGGAAAGAGTTTTTCTGTTCGGCGGCGAGAAGCGTGTACG
TGGTGACGGGGCTTATGGGTACGGCCACGGCTTTTCACCCGAAGCAGGCA
CGTTGGAAGTGGTTGCTGGTTTCCATGGTGCTGATCAGCATCGCCACCAT
GGTGTTTGTAGTGTTGTACTTCGTCAAGTCGTACAGAAGGTGGAGGCGTT
TCGACCAACTTGGGCGCGATCGGTGGGCGTACTACGCTTCGAGGGCTTCG
CTGTTGAGGCCGCTCAGCAGACAAGATATGCGGCGTCTCTTGGAGTGGTA
CAACGTGCGACGCGGAGAGCGCGACATCGAGTTGAACGTCAAGCACAACC
TGGTATGGCTGGCGAACGACGACGTCGCCACGCCGACCGCGCTGGTCGGC
CGCAAGATCGTGCCCATCTTCCAGCCGCTCGGCGCCGGCGCCGACGCCCT
CGCGGAGAGCCTGGACATCTGCGCCGCCGTGGACGCCGACGCGCGTTTCG
GGCAGCCCGGCTTGCTCCGGCCGCTTTCGGCGCGCGCGGATGTGGCGCAG
TGGATGGAACAGCTGGCAATGCCGATGCGACGCCTCACACGCGTGCGCTT
CTCGCGCGCGCCGCTGCCCGAGTTTGTGTTTGCCGACGCGAGGGAGGCGT
ACGTGAGGAATCACCCGTTGAAGGAGCCCGCGGAGTACGAGCAGAACTGG
GCGAGGTCGGATGAGTACATCGCGCCGATTCAGGCCCGCATTCAGGAATT
GGCTGATATGATCCACTCGCCGTACCACTGCTCGCCCGGCGGCTTGTCGT
ATGATGACATTGTTTTGTTCCCGCGCTTGCGCGCAATGACCATTATCAAG
GGCTTGACGCTTCCGTCCGCCATCCGAGACTACTTGGAGTATCACTCTGC
TGCGTCCGAGATTCCGTTGTACGACTATTGCGCCATGTGA
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