Ggra10751.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra10751.t1
Unique NameGgra10751.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length131
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000200_piloncontigtig00000200_pilon:101571..101963 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005707783.1
Preferred nameABCF3
PFAMsABC_tran,ABC_tran_Xtn
Max annot lvl2759|Eukaryota
KEGG koko:K06158
GOsGO:0000166,GO:0001932,GO:0001934,GO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006417,GO:0006448,GO:0008144,GO:0008150,GO:0009889,GO:0009893,GO:0010468,GO:0010556,GO:0010562,GO:0010604,GO:0010608,GO:0010941,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017076,GO:0017111,GO:0019220,GO:0019222,GO:0022626,GO:0030554,GO:0031323,GO:0031325,GO:0031326,GO:0031399,GO:0031401,GO:0032268,GO:0032270,GO:0032553,GO:0032555,GO:0032559,GO:0032991,GO:0033135,GO:0033138,GO:0034248,GO:0035639,GO:0036094,GO:0042325,GO:0042327,GO:0042981,GO:0043067,GO:0043167,GO:0043168,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044424,GO:0044444,GO:0044445,GO:0044464,GO:0045937,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0051171,GO:0051173,GO:0051174,GO:0051246,GO:0051247,GO:0060255,GO:0065007,GO:0080090,GO:0097159,GO:0097367,GO:1900247,GO:1901265,GO:1901363,GO:1990904,GO:2000112,GO:2000765
Evalue9.19e-35
EggNOG OGsCOG0488@1|root,KOG0062@2759|Eukaryota
DescriptionATPase activity
COG categoryJ
BRITEko00000,ko03012
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra10751Ggra10751Gracilaria gracilis GNS1m malegenetig00000200_pilon 101571..101963 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10751.t1.start1Ggra10751.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000200_pilon 101571..101573 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10751.t1.CDS1Ggra10751.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000200_pilon 101571..101963 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10751.t1.exon1Ggra10751.t1.exon1Gracilaria gracilis GNS1m maleexontig00000200_pilon 101571..101963 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10751.t1.stop1Ggra10751.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000200_pilon 101961..101963 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10751.t1Ggra10751.t1Gracilaria gracilis GNS1m malepolypeptidetig00000200_pilon 101571..101963 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra10751.t1 ID=Ggra10751.t1|Name=Ggra10751.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=131bp
MAQSQLKMLQHMDEERVVLPSEEEEVSFTFPDPGALTGSHASAQICDLNF
GYPDREVLFRSLDFSINMDSRTVLLGPNGAGKSTLLKLLLDESIPIDGEV
KKSPKQQLGYFSQHHMDTLALWRTALEHMK*
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spliced messenger RNA

>Ggra10751.t1 ID=Ggra10751.t1|Name=Ggra10751.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=393bp|location=Sequence derived from alignment at tig00000200_pilon:101571..101963+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCACAAAGTCAATTGAAGATGTTACAACATATGGATGAAGAGCGAGT
TGTACTTCCTAGCGAAGAGGAAGAAGTTTCGTTCACATTCCCGGATCCCG
GAGCATTAACTGGCTCGCATGCATCTGCTCAGATTTGTGACCTGAATTTT
GGATACCCAGACCGAGAAGTTCTCTTTCGGAGTCTGGACTTCAGCATCAA
CATGGATTCTAGAACTGTGCTTCTCGGTCCAAATGGGGCGGGCAAGTCAA
CGTTACTCAAGCTCCTTCTAGACGAAAGCATTCCCATCGACGGGGAGGTG
AAGAAGTCACCGAAGCAGCAGTTGGGATACTTCTCACAGCATCATATGGA
CACTCTAGCACTTTGGCGAACGGCGTTGGAGCACATGAAATGA
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protein sequence of Ggra10751.t1

>Ggra10751.t1 ID=Ggra10751.t1|Name=Ggra10751.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=131bp
MAQSQLKMLQHMDEERVVLPSEEEEVSFTFPDPGALTGSHASAQICDLNF
GYPDREVLFRSLDFSINMDSRTVLLGPNGAGKSTLLKLLLDESIPIDGEV
KKSPKQQLGYFSQHHMDTLALWRTALEHMK*
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mRNA from alignment at tig00000200_pilon:101571..101963+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra10751.t1 ID=Ggra10751.t1|Name=Ggra10751.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=393bp|location=Sequence derived from alignment at tig00000200_pilon:101571..101963+ (Gracilaria gracilis GNS1m male)
ATGGCACAAAGTCAATTGAAGATGTTACAACATATGGATGAAGAGCGAGT
TGTACTTCCTAGCGAAGAGGAAGAAGTTTCGTTCACATTCCCGGATCCCG
GAGCATTAACTGGCTCGCATGCATCTGCTCAGATTTGTGACCTGAATTTT
GGATACCCAGACCGAGAAGTTCTCTTTCGGAGTCTGGACTTCAGCATCAA
CATGGATTCTAGAACTGTGCTTCTCGGTCCAAATGGGGCGGGCAAGTCAA
CGTTACTCAAGCTCCTTCTAGACGAAAGCATTCCCATCGACGGGGAGGTG
AAGAAGTCACCGAAGCAGCAGTTGGGATACTTCTCACAGCATCATATGGA
CACTCTAGCACTTTGGCGAACGGCGTTGGAGCACATGAAATGA
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Coding sequence (CDS) from alignment at tig00000200_pilon:101571..101963+

>Ggra10751.t1 ID=Ggra10751.t1|Name=Ggra10751.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=393bp|location=Sequence derived from alignment at tig00000200_pilon:101571..101963+ (Gracilaria gracilis GNS1m male)
ATGGCACAAAGTCAATTGAAGATGTTACAACATATGGATGAAGAGCGAGT
TGTACTTCCTAGCGAAGAGGAAGAAGTTTCGTTCACATTCCCGGATCCCG
GAGCATTAACTGGCTCGCATGCATCTGCTCAGATTTGTGACCTGAATTTT
GGATACCCAGACCGAGAAGTTCTCTTTCGGAGTCTGGACTTCAGCATCAA
CATGGATTCTAGAACTGTGCTTCTCGGTCCAAATGGGGCGGGCAAGTCAA
CGTTACTCAAGCTCCTTCTAGACGAAAGCATTCCCATCGACGGGGAGGTG
AAGAAGTCACCGAAGCAGCAGTTGGGATACTTCTCACAGCATCATATGGA
CACTCTAGCACTTTGGCGAACGGCGTTGGAGCACATGAAATGA
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