Ggra10747.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra10747.t1
Unique Name	Ggra10747.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	456

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000200_pilon	contig	tig00000200_pilon:88832..90199 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra10747	Ggra10747	Gracilaria gracilis GNS1m male	gene	tig00000200_pilon 88832..90199 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra10747.t1.start1	Ggra10747.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000200_pilon 88832..88834 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra10747.t1.CDS1	Ggra10747.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000200_pilon 88832..90199 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra10747.t1.exon1	Ggra10747.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000200_pilon 88832..90199 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra10747.t1.stop1	Ggra10747.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000200_pilon 90197..90199 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra10747.t1	Ggra10747.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000200_pilon 88832..90199 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000200_pilon:88832..90199+
coding sequence from alignment at tig00000200_pilon:88832..90199+

mRNA sequence

>Ggra10747.t1 ID=Ggra10747.t1|Name=Ggra10747.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=456bp
MENRPGQHLSKKAELMDFLDEFELHDADRWSEDKCDRRKSSYSESAGRSV
GTYEFSNEKKDREDVASLPTGNDAEDCVDLEQENPALTCQILGDEILENP
ARNETPQKMKANKVKTLARTEVASKSENEVRIDDKHGYQRASELRRGGWE
RPWSPQASPSCIQPKKQSSSRQRSASMRRNSEELVNSDSDAEVIEDLQKC
RYRSQKSIPSESSSLDDYSGFKSERIEAQHRSPTTSAGEAIFPKKVSSKA
KALGRKESVSNAENALSRWEYEHGYQRASELRRKGGESPWSPRPSRNCIQ
AKRNSSTMQRGASMRRNSLAFVNLDSDAEVAEDSQKCLYRNHQGAISRSR
DPKSYLERESDRIVSQYGVSARFGDGQDHRSMPYSHSGKKRGRELWSHGN
ELGPHTGNWGFTRSLRFDDNGFSSEFEEKEDAVKRGQSSRRGRYTTVDSL
FRILT*

spliced messenger RNA

>Ggra10747.t1 ID=Ggra10747.t1|Name=Ggra10747.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1368bp|location=Sequence derived from alignment at tig00000200_pilon:88832..90199+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAGAATAGGCCAGGGCAACATTTAAGTAAGAAGGCAGAGCTCATGGA
TTTCTTGGATGAATTTGAGTTGCATGATGCAGACCGATGGAGTGAAGACA
AGTGCGATAGAAGGAAATCTTCTTACTCAGAAAGCGCAGGGCGATCTGTG
GGTACATACGAGTTTTCGAACGAAAAGAAGGACCGGGAGGATGTGGCAAG
TCTACCAACGGGCAACGATGCTGAGGATTGTGTAGATCTTGAGCAAGAAA
ATCCAGCTCTGACATGTCAGATACTTGGAGACGAGATTCTAGAGAACCCC
GCTCGAAATGAAACGCCACAAAAGATGAAAGCAAACAAAGTGAAAACACT
TGCAAGAACAGAAGTAGCTTCCAAATCAGAGAACGAGGTAAGGATTGACG
ACAAACATGGGTATCAGCGAGCCTCTGAATTAAGACGAGGTGGATGGGAA
AGGCCTTGGTCTCCACAAGCAAGCCCGAGCTGCATTCAACCTAAGAAGCA
AAGCTCATCCAGACAAAGGAGCGCATCCATGCGGAGGAATTCAGAGGAAC
TTGTCAACTCAGACAGTGATGCAGAAGTGATTGAGGATTTGCAAAAATGT
CGGTATCGCAGTCAGAAGAGTATTCCATCAGAATCCAGCAGTTTGGACGA
CTATTCTGGCTTTAAATCAGAACGGATTGAAGCACAACATCGGAGTCCCA
CAACCTCCGCCGGAGAGGCAATTTTTCCAAAGAAAGTGAGCAGCAAGGCA
AAAGCATTGGGAAGAAAAGAATCAGTTTCCAACGCAGAGAACGCCCTAAG
CAGATGGGAATATGAACATGGATATCAGCGTGCCTCTGAGTTACGGCGAA
AGGGAGGGGAAAGCCCTTGGTCTCCACGACCTAGTCGAAACTGCATTCAA
GCTAAGAGGAATAGCTCGACGATGCAAAGGGGTGCTTCTATGCGGCGGAA
TTCATTGGCCTTTGTAAACCTAGACAGTGATGCAGAAGTGGCTGAGGATT
CGCAAAAATGCCTATATCGTAATCATCAGGGTGCCATATCAAGATCCCGT
GATCCAAAAAGCTATCTCGAGCGAGAATCGGATAGGATTGTATCTCAGTA
CGGGGTATCTGCACGGTTCGGAGATGGGCAGGACCATCGATCAATGCCGT
ACTCACATTCGGGAAAGAAAAGGGGACGGGAACTGTGGTCACACGGAAAT
GAATTGGGTCCACATACGGGTAACTGGGGCTTCACGAGATCTCTACGATT
TGATGACAACGGCTTCAGTTCTGAGTTCGAAGAAAAAGAAGACGCGGTAA
AACGTGGCCAATCTTCCAGGCGGGGGAGGTACACCACTGTTGACAGTCTT
TTCCGTATTCTGACTTAA

protein sequence of Ggra10747.t1

>Ggra10747.t1 ID=Ggra10747.t1|Name=Ggra10747.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=456bp
MENRPGQHLSKKAELMDFLDEFELHDADRWSEDKCDRRKSSYSESAGRSV
GTYEFSNEKKDREDVASLPTGNDAEDCVDLEQENPALTCQILGDEILENP
ARNETPQKMKANKVKTLARTEVASKSENEVRIDDKHGYQRASELRRGGWE
RPWSPQASPSCIQPKKQSSSRQRSASMRRNSEELVNSDSDAEVIEDLQKC
RYRSQKSIPSESSSLDDYSGFKSERIEAQHRSPTTSAGEAIFPKKVSSKA
KALGRKESVSNAENALSRWEYEHGYQRASELRRKGGESPWSPRPSRNCIQ
AKRNSSTMQRGASMRRNSLAFVNLDSDAEVAEDSQKCLYRNHQGAISRSR
DPKSYLERESDRIVSQYGVSARFGDGQDHRSMPYSHSGKKRGRELWSHGN
ELGPHTGNWGFTRSLRFDDNGFSSEFEEKEDAVKRGQSSRRGRYTTVDSL
FRILT*

mRNA from alignment at tig00000200_pilon:88832..90199+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra10747.t1 ID=Ggra10747.t1|Name=Ggra10747.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1368bp|location=Sequence derived from alignment at tig00000200_pilon:88832..90199+ (Gracilaria gracilis GNS1m male)
ATGGAGAATAGGCCAGGGCAACATTTAAGTAAGAAGGCAGAGCTCATGGA
TTTCTTGGATGAATTTGAGTTGCATGATGCAGACCGATGGAGTGAAGACA
AGTGCGATAGAAGGAAATCTTCTTACTCAGAAAGCGCAGGGCGATCTGTG
GGTACATACGAGTTTTCGAACGAAAAGAAGGACCGGGAGGATGTGGCAAG
TCTACCAACGGGCAACGATGCTGAGGATTGTGTAGATCTTGAGCAAGAAA
ATCCAGCTCTGACATGTCAGATACTTGGAGACGAGATTCTAGAGAACCCC
GCTCGAAATGAAACGCCACAAAAGATGAAAGCAAACAAAGTGAAAACACT
TGCAAGAACAGAAGTAGCTTCCAAATCAGAGAACGAGGTAAGGATTGACG
ACAAACATGGGTATCAGCGAGCCTCTGAATTAAGACGAGGTGGATGGGAA
AGGCCTTGGTCTCCACAAGCAAGCCCGAGCTGCATTCAACCTAAGAAGCA
AAGCTCATCCAGACAAAGGAGCGCATCCATGCGGAGGAATTCAGAGGAAC
TTGTCAACTCAGACAGTGATGCAGAAGTGATTGAGGATTTGCAAAAATGT
CGGTATCGCAGTCAGAAGAGTATTCCATCAGAATCCAGCAGTTTGGACGA
CTATTCTGGCTTTAAATCAGAACGGATTGAAGCACAACATCGGAGTCCCA
CAACCTCCGCCGGAGAGGCAATTTTTCCAAAGAAAGTGAGCAGCAAGGCA
AAAGCATTGGGAAGAAAAGAATCAGTTTCCAACGCAGAGAACGCCCTAAG
CAGATGGGAATATGAACATGGATATCAGCGTGCCTCTGAGTTACGGCGAA
AGGGAGGGGAAAGCCCTTGGTCTCCACGACCTAGTCGAAACTGCATTCAA
GCTAAGAGGAATAGCTCGACGATGCAAAGGGGTGCTTCTATGCGGCGGAA
TTCATTGGCCTTTGTAAACCTAGACAGTGATGCAGAAGTGGCTGAGGATT
CGCAAAAATGCCTATATCGTAATCATCAGGGTGCCATATCAAGATCCCGT
GATCCAAAAAGCTATCTCGAGCGAGAATCGGATAGGATTGTATCTCAGTA
CGGGGTATCTGCACGGTTCGGAGATGGGCAGGACCATCGATCAATGCCGT
ACTCACATTCGGGAAAGAAAAGGGGACGGGAACTGTGGTCACACGGAAAT
GAATTGGGTCCACATACGGGTAACTGGGGCTTCACGAGATCTCTACGATT
TGATGACAACGGCTTCAGTTCTGAGTTCGAAGAAAAAGAAGACGCGGTAA
AACGTGGCCAATCTTCCAGGCGGGGGAGGTACACCACTGTTGACAGTCTT
TTCCGTATTCTGACTTAA

Coding sequence (CDS) from alignment at tig00000200_pilon:88832..90199+

>Ggra10747.t1 ID=Ggra10747.t1|Name=Ggra10747.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1368bp|location=Sequence derived from alignment at tig00000200_pilon:88832..90199+ (Gracilaria gracilis GNS1m male)
ATGGAGAATAGGCCAGGGCAACATTTAAGTAAGAAGGCAGAGCTCATGGA
TTTCTTGGATGAATTTGAGTTGCATGATGCAGACCGATGGAGTGAAGACA
AGTGCGATAGAAGGAAATCTTCTTACTCAGAAAGCGCAGGGCGATCTGTG
GGTACATACGAGTTTTCGAACGAAAAGAAGGACCGGGAGGATGTGGCAAG
TCTACCAACGGGCAACGATGCTGAGGATTGTGTAGATCTTGAGCAAGAAA
ATCCAGCTCTGACATGTCAGATACTTGGAGACGAGATTCTAGAGAACCCC
GCTCGAAATGAAACGCCACAAAAGATGAAAGCAAACAAAGTGAAAACACT
TGCAAGAACAGAAGTAGCTTCCAAATCAGAGAACGAGGTAAGGATTGACG
ACAAACATGGGTATCAGCGAGCCTCTGAATTAAGACGAGGTGGATGGGAA
AGGCCTTGGTCTCCACAAGCAAGCCCGAGCTGCATTCAACCTAAGAAGCA
AAGCTCATCCAGACAAAGGAGCGCATCCATGCGGAGGAATTCAGAGGAAC
TTGTCAACTCAGACAGTGATGCAGAAGTGATTGAGGATTTGCAAAAATGT
CGGTATCGCAGTCAGAAGAGTATTCCATCAGAATCCAGCAGTTTGGACGA
CTATTCTGGCTTTAAATCAGAACGGATTGAAGCACAACATCGGAGTCCCA
CAACCTCCGCCGGAGAGGCAATTTTTCCAAAGAAAGTGAGCAGCAAGGCA
AAAGCATTGGGAAGAAAAGAATCAGTTTCCAACGCAGAGAACGCCCTAAG
CAGATGGGAATATGAACATGGATATCAGCGTGCCTCTGAGTTACGGCGAA
AGGGAGGGGAAAGCCCTTGGTCTCCACGACCTAGTCGAAACTGCATTCAA
GCTAAGAGGAATAGCTCGACGATGCAAAGGGGTGCTTCTATGCGGCGGAA
TTCATTGGCCTTTGTAAACCTAGACAGTGATGCAGAAGTGGCTGAGGATT
CGCAAAAATGCCTATATCGTAATCATCAGGGTGCCATATCAAGATCCCGT
GATCCAAAAAGCTATCTCGAGCGAGAATCGGATAGGATTGTATCTCAGTA
CGGGGTATCTGCACGGTTCGGAGATGGGCAGGACCATCGATCAATGCCGT
ACTCACATTCGGGAAAGAAAAGGGGACGGGAACTGTGGTCACACGGAAAT
GAATTGGGTCCACATACGGGTAACTGGGGCTTCACGAGATCTCTACGATT
TGATGACAACGGCTTCAGTTCTGAGTTCGAAGAAAAAGAAGACGCGGTAA
AACGTGGCCAATCTTCCAGGCGGGGGAGGTACACCACTGTTGACAGTCTT
TTCCGTATTCTGACTTAA