Ggra10741.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra10741.t1
Unique NameGgra10741.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length250
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000200_piloncontigtig00000200_pilon:60954..61822 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005704887.1
PFAMsFer4
Max annot lvl2759|Eukaryota
KEGG rclassRC00061
KEGG koko:K03941,ko:K09534
KEGG TC3.D.1.6
KEGG ReactionR11945
KEGG Pathwayko00190,ko01100,ko04714,ko04723,ko04932,ko05010,ko05012,ko05016,map00190,map01100,map04714,map04723,map04932,map05010,map05012,map05016
KEGG ModuleM00143
GOsGO:0003674,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005746,GO:0005747,GO:0016020,GO:0019866,GO:0030964,GO:0031090,GO:0031966,GO:0031967,GO:0031975,GO:0032991,GO:0043167,GO:0043169,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044444,GO:0044446,GO:0044455,GO:0044464,GO:0045271,GO:0046872,GO:0070469,GO:0098796,GO:0098798,GO:0098800,GO:0098803,GO:1902494,GO:1990204
Evalue2.93e-71
EggNOG OGsCOG1143@1|root,KOG3256@2759|Eukaryota
EC1.6.5.3,1.6.99.3
DescriptionNADH dehydrogenase activity
COG categoryC
BRITEko00000,ko00001,ko00002,ko01000,ko03110
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra10741Ggra10741Gracilaria gracilis GNS1m malegenetig00000200_pilon 60954..61822 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10741.t1Ggra10741.t1Gracilaria gracilis GNS1m malepolypeptidetig00000200_pilon 60954..61822 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10741.t1.start1Ggra10741.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000200_pilon 60954..60956 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10741.t1.CDS1Ggra10741.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000200_pilon 60954..61221 +
Ggra10741.t1.CDS2Ggra10741.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000200_pilon 61341..61822 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10741.t1.exon1Ggra10741.t1.exon1Gracilaria gracilis GNS1m maleexontig00000200_pilon 60954..61221 +
Ggra10741.t1.exon2Ggra10741.t1.exon2Gracilaria gracilis GNS1m maleexontig00000200_pilon 61341..61822 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10741.t1.intron1Ggra10741.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000200_pilon 61222..61340 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10741.t1.stop1Ggra10741.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000200_pilon 61820..61822 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra10741.t1 ID=Ggra10741.t1|Name=Ggra10741.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=250bp
MSAEARRLVISPKSHFLPPPIRRSRSKSFDASSSARLRDASREQLARSAR
VLRPGVRSVFSITPRLNESERKPTEPSTSETPLKTNTQHLVTRTAEALFL
TEMFRGLALTLRYFFQPKVTLNYPMEKGPLSPRFRGEHALRRYPSGEERC
IVCKLCEAVCPAQAITIEAEPRPDGSRRTTRYDIDMTKCIFCGACQEACP
VDAIVEGPNYEYATETHEELLYNKEKLLANGDRWESEIAKNIANESMYR*
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spliced messenger RNA

>Ggra10741.t1 ID=Ggra10741.t1|Name=Ggra10741.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=750bp|location=Sequence derived from alignment at tig00000200_pilon:60954..61822+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCTGCGGAAGCGCGCCGGCTGGTGATTTCACCGAAGTCGCACTTTCT
TCCGCCTCCGATACGGCGAAGCCGAAGCAAATCTTTCGACGCGTCTTCGA
GTGCGCGCCTTCGAGATGCTTCCCGTGAGCAGCTGGCGCGGTCTGCGCGC
GTGCTGCGGCCGGGCGTGCGCTCGGTCTTCTCGATCACGCCGCGTCTGAA
TGAGAGCGAGAGGAAACCCACCGAGCCGTCGACTTCTGAGACTCCACTTA
AGACCAACACGCAACACCTCGTCACTCGAACGGCGGAGGCTTTGTTCCTC
ACGGAGATGTTCCGTGGTCTTGCTTTGACGTTACGGTACTTCTTCCAACC
CAAGGTCACGTTGAATTATCCCATGGAAAAGGGTCCTCTCTCACCACGTT
TTCGCGGCGAACATGCATTGCGACGCTATCCATCCGGCGAAGAACGCTGC
ATTGTATGCAAACTGTGTGAAGCTGTATGTCCAGCACAGGCTATCACCAT
TGAAGCTGAGCCGCGTCCTGACGGATCGAGACGTACGACTAGGTATGACA
TCGACATGACCAAGTGCATTTTCTGCGGCGCTTGTCAGGAAGCTTGTCCT
GTTGATGCCATTGTTGAGGGTCCCAACTATGAGTATGCTACGGAGACCCA
TGAGGAGTTACTGTATAACAAGGAAAAGTTGTTGGCCAATGGCGATAGAT
GGGAGTCTGAAATTGCGAAGAACATTGCCAACGAGAGCATGTACCGCTAA
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protein sequence of Ggra10741.t1

>Ggra10741.t1 ID=Ggra10741.t1|Name=Ggra10741.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=250bp
MSAEARRLVISPKSHFLPPPIRRSRSKSFDASSSARLRDASREQLARSAR
VLRPGVRSVFSITPRLNESERKPTEPSTSETPLKTNTQHLVTRTAEALFL
TEMFRGLALTLRYFFQPKVTLNYPMEKGPLSPRFRGEHALRRYPSGEERC
IVCKLCEAVCPAQAITIEAEPRPDGSRRTTRYDIDMTKCIFCGACQEACP
VDAIVEGPNYEYATETHEELLYNKEKLLANGDRWESEIAKNIANESMYR*
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mRNA from alignment at tig00000200_pilon:60954..61822+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra10741.t1 ID=Ggra10741.t1|Name=Ggra10741.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=869bp|location=Sequence derived from alignment at tig00000200_pilon:60954..61822+ (Gracilaria gracilis GNS1m male)
ATGTCTGCGGAAGCGCGCCGGCTGGTGATTTCACCGAAGTCGCACTTTCT
TCCGCCTCCGATACGGCGAAGCCGAAGCAAATCTTTCGACGCGTCTTCGA
GTGCGCGCCTTCGAGATGCTTCCCGTGAGCAGCTGGCGCGGTCTGCGCGC
GTGCTGCGGCCGGGCGTGCGCTCGGTCTTCTCGATCACGCCGCGTCTGAA
TGAGAGCGAGAGGAAACCCACCGAGCCGTCGACTTCTGAGACTCCACTTA
AGACCAACACGCAACACCGTACGTTCCTCTTCCTAATTGCGCTTTCCACG
GCGCCATGTGCGTCCAATCGGCTGTGCTAACCTCTCACCTATGCTCGTGC
TGCAATTCGCTTCCACGCGTGATTCGAAATATCGCAGTCGTCACTCGAAC
GGCGGAGGCTTTGTTCCTCACGGAGATGTTCCGTGGTCTTGCTTTGACGT
TACGGTACTTCTTCCAACCCAAGGTCACGTTGAATTATCCCATGGAAAAG
GGTCCTCTCTCACCACGTTTTCGCGGCGAACATGCATTGCGACGCTATCC
ATCCGGCGAAGAACGCTGCATTGTATGCAAACTGTGTGAAGCTGTATGTC
CAGCACAGGCTATCACCATTGAAGCTGAGCCGCGTCCTGACGGATCGAGA
CGTACGACTAGGTATGACATCGACATGACCAAGTGCATTTTCTGCGGCGC
TTGTCAGGAAGCTTGTCCTGTTGATGCCATTGTTGAGGGTCCCAACTATG
AGTATGCTACGGAGACCCATGAGGAGTTACTGTATAACAAGGAAAAGTTG
TTGGCCAATGGCGATAGATGGGAGTCTGAAATTGCGAAGAACATTGCCAA
CGAGAGCATGTACCGCTAA
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Coding sequence (CDS) from alignment at tig00000200_pilon:60954..61822+

>Ggra10741.t1 ID=Ggra10741.t1|Name=Ggra10741.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=750bp|location=Sequence derived from alignment at tig00000200_pilon:60954..61822+ (Gracilaria gracilis GNS1m male)
ATGTCTGCGGAAGCGCGCCGGCTGGTGATTTCACCGAAGTCGCACTTTCT
TCCGCCTCCGATACGGCGAAGCCGAAGCAAATCTTTCGACGCGTCTTCGA
GTGCGCGCCTTCGAGATGCTTCCCGTGAGCAGCTGGCGCGGTCTGCGCGC
GTGCTGCGGCCGGGCGTGCGCTCGGTCTTCTCGATCACGCCGCGTCTGAA
TGAGAGCGAGAGGAAACCCACCGAGCCGTCGACTTCTGAGACTCCACTTA
AGACCAACACGCAACACCTCGTCACTCGAACGGCGGAGGCTTTGTTCCTC
ACGGAGATGTTCCGTGGTCTTGCTTTGACGTTACGGTACTTCTTCCAACC
CAAGGTCACGTTGAATTATCCCATGGAAAAGGGTCCTCTCTCACCACGTT
TTCGCGGCGAACATGCATTGCGACGCTATCCATCCGGCGAAGAACGCTGC
ATTGTATGCAAACTGTGTGAAGCTGTATGTCCAGCACAGGCTATCACCAT
TGAAGCTGAGCCGCGTCCTGACGGATCGAGACGTACGACTAGGTATGACA
TCGACATGACCAAGTGCATTTTCTGCGGCGCTTGTCAGGAAGCTTGTCCT
GTTGATGCCATTGTTGAGGGTCCCAACTATGAGTATGCTACGGAGACCCA
TGAGGAGTTACTGTATAACAAGGAAAAGTTGTTGGCCAATGGCGATAGAT
GGGAGTCTGAAATTGCGAAGAACATTGCCAACGAGAGCATGTACCGCTAA
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