Ggra10728.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra10728.t1
Unique NameGgra10728.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length393
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000888_piloncontigtig00000888_pilon:1018690..1019993 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra10728Ggra10728Gracilaria gracilis GNS1m malegenetig00000888_pilon 1018690..1019993 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10728.t1Ggra10728.t1Gracilaria gracilis GNS1m malepolypeptidetig00000888_pilon 1018690..1019993 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10728.t1.stop1Ggra10728.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000888_pilon 1018690..1018692 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10728.t1.CDS1Ggra10728.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000888_pilon 1018690..1019580 -
Ggra10728.t1.CDS2Ggra10728.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000888_pilon 1019706..1019993 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10728.t1.exon1Ggra10728.t1.exon1Gracilaria gracilis GNS1m maleexontig00000888_pilon 1018690..1019580 -
Ggra10728.t1.exon2Ggra10728.t1.exon2Gracilaria gracilis GNS1m maleexontig00000888_pilon 1019706..1019993 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10728.t1.intron1Ggra10728.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000888_pilon 1019581..1019705 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10728.t1.start1Ggra10728.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000888_pilon 1019991..1019993 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra10728.t1 ID=Ggra10728.t1|Name=Ggra10728.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=393bp
MAANRVRDSHGRCRLSHQSVRDLRTWKKLSGRDLEGRSIHSLPPTASIHS
DAADVGYGGILHLQDMGAGRPGLWAAQGIWDWRDRVCTITNRELKAASDE
GVSPFETGSRRKKSIYLFGLASFGSKQVCRRSFAAIPPRRPPDQVAAAAF
RAGWYGRSSRRIPIQTARRASRVSTQAVMGGVRGNSGPQRSSSSVSTRGL
NHADTDRVAPDRITGPTADTKMETAAVVLDRTSDGLKSRRIVNAIRPRLG
RPEEPQSSLARATTRYESVTMEMLAAGRLRESAASSAAMHRSTRLLVEHG
WARRTSRSRDTQWRTFTAFCRSDNLNPLLVTEAHLAAFIGWVTEEREAGR
RNIGSSSLPQYLSVIRQRHLAALGSEVPPFPFISHLLRAHPR*
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spliced messenger RNA

>Ggra10728.t1 ID=Ggra10728.t1|Name=Ggra10728.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1179bp|location=Sequence derived from alignment at tig00000888_pilon:1018690..1019993- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTGCAAACAGAGTACGCGATTCGCATGGACGCTGCCGACTCAGCCA
TCAGAGTGTACGCGATCTCAGAACCTGGAAGAAACTATCTGGCAGGGACC
TGGAAGGCCGTTCAATACATTCACTTCCTCCTACCGCTTCAATTCATTCA
GATGCGGCGGACGTGGGTTATGGTGGAATATTACACCTCCAGGACATGGG
CGCTGGTCGCCCTGGGCTGTGGGCCGCCCAGGGCATCTGGGACTGGCGAG
ACCGTGTTTGCACTATTACCAACCGCGAACTGAAGGCCGCCAGTGATGAG
GGAGTTTCGCCGTTTGAAACGGGTTCTCGACGCAAGAAATCTATATATTT
GTTCGGACTGGCTTCCTTCGGTAGCAAACAAGTTTGCAGACGCTCTTTCG
CGGCGATTCCCCCGCGGAGACCTCCGGATCAGGTGGCAGCTGCGGCGTTC
CGTGCGGGCTGGTATGGGCGCAGCTCGAGACGCATTCCAATACAGACCGC
TCGGAGAGCATCCCGTGTTTCTACGCAGGCAGTCATGGGCGGAGTTAGAG
GCAATTCGGGACCCCAACGAAGTTCGTCTTCTGTGTCCACCCGTGGATTA
AATCACGCCGACACTGATAGAGTTGCGCCGGACAGGATCACCGGCCCTAC
TGCTGATACCAAAATGGAAACGGCAGCCGTGGTACTGGACCGCACTTCGG
ATGGCCTCAAAAGTCGAAGAATTGTCAACGCCATCAGACCACGTTTGGGA
CGCCCAGAGGAGCCTCAATCCTCGCTGGCGCGTGCTACTACTAGATATGA
ATCTGTAACAATGGAGATGCTGGCTGCTGGTCGCCTTAGAGAAAGCGCAG
CTTCCAGCGCTGCTATGCACCGCTCTACCCGATTGCTAGTGGAGCATGGT
TGGGCTCGGCGTACAAGCAGATCCCGCGATACCCAATGGCGCACTTTCAC
CGCTTTTTGTCGATCGGACAATCTCAACCCTCTTCTTGTTACTGAAGCTC
ACTTGGCCGCTTTTATTGGATGGGTGACTGAAGAACGAGAAGCTGGTCGT
CGTAACATTGGTAGCTCCTCTCTGCCGCAGTATCTTTCTGTAATACGACA
ACGTCATCTTGCAGCTTTAGGCAGCGAGGTACCGCCGTTCCCTTTCATTT
CGCATTTGCTTCGAGCCCATCCTCGATAG
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protein sequence of Ggra10728.t1

>Ggra10728.t1 ID=Ggra10728.t1|Name=Ggra10728.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=393bp
MAANRVRDSHGRCRLSHQSVRDLRTWKKLSGRDLEGRSIHSLPPTASIHS
DAADVGYGGILHLQDMGAGRPGLWAAQGIWDWRDRVCTITNRELKAASDE
GVSPFETGSRRKKSIYLFGLASFGSKQVCRRSFAAIPPRRPPDQVAAAAF
RAGWYGRSSRRIPIQTARRASRVSTQAVMGGVRGNSGPQRSSSSVSTRGL
NHADTDRVAPDRITGPTADTKMETAAVVLDRTSDGLKSRRIVNAIRPRLG
RPEEPQSSLARATTRYESVTMEMLAAGRLRESAASSAAMHRSTRLLVEHG
WARRTSRSRDTQWRTFTAFCRSDNLNPLLVTEAHLAAFIGWVTEEREAGR
RNIGSSSLPQYLSVIRQRHLAALGSEVPPFPFISHLLRAHPR*
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mRNA from alignment at tig00000888_pilon:1018690..1019993-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra10728.t1 ID=Ggra10728.t1|Name=Ggra10728.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1304bp|location=Sequence derived from alignment at tig00000888_pilon:1018690..1019993- (Gracilaria gracilis GNS1m male)
ATGGCTGCAAACAGAGTACGCGATTCGCATGGACGCTGCCGACTCAGCCA
TCAGAGTGTACGCGATCTCAGAACCTGGAAGAAACTATCTGGCAGGGACC
TGGAAGGCCGTTCAATACATTCACTTCCTCCTACCGCTTCAATTCATTCA
GATGCGGCGGACGTGGGTTATGGTGGAATATTACACCTCCAGGACATGGG
CGCTGGTCGCCCTGGGCTGTGGGCCGCCCAGGGCATCTGGGACTGGCGAG
ACCGTGTTTGCACTATTACCAACCGCGAACTGAAGGCCGTTCGTCTGTTA
TTAATGGGCAAACTTGGGAGGAAGCTACAAACACTCAAACGAAATGACAT
TTTATGCCATCTCGACAACCAAGGTGTGGTTTATATCACAAACGCGTTTG
TGTCCGCCAGCAGGCCAGTGATGAGGGAGTTTCGCCGTTTGAAACGGGTT
CTCGACGCAAGAAATCTATATATTTGTTCGGACTGGCTTCCTTCGGTAGC
AAACAAGTTTGCAGACGCTCTTTCGCGGCGATTCCCCCGCGGAGACCTCC
GGATCAGGTGGCAGCTGCGGCGTTCCGTGCGGGCTGGTATGGGCGCAGCT
CGAGACGCATTCCAATACAGACCGCTCGGAGAGCATCCCGTGTTTCTACG
CAGGCAGTCATGGGCGGAGTTAGAGGCAATTCGGGACCCCAACGAAGTTC
GTCTTCTGTGTCCACCCGTGGATTAAATCACGCCGACACTGATAGAGTTG
CGCCGGACAGGATCACCGGCCCTACTGCTGATACCAAAATGGAAACGGCA
GCCGTGGTACTGGACCGCACTTCGGATGGCCTCAAAAGTCGAAGAATTGT
CAACGCCATCAGACCACGTTTGGGACGCCCAGAGGAGCCTCAATCCTCGC
TGGCGCGTGCTACTACTAGATATGAATCTGTAACAATGGAGATGCTGGCT
GCTGGTCGCCTTAGAGAAAGCGCAGCTTCCAGCGCTGCTATGCACCGCTC
TACCCGATTGCTAGTGGAGCATGGTTGGGCTCGGCGTACAAGCAGATCCC
GCGATACCCAATGGCGCACTTTCACCGCTTTTTGTCGATCGGACAATCTC
AACCCTCTTCTTGTTACTGAAGCTCACTTGGCCGCTTTTATTGGATGGGT
GACTGAAGAACGAGAAGCTGGTCGTCGTAACATTGGTAGCTCCTCTCTGC
CGCAGTATCTTTCTGTAATACGACAACGTCATCTTGCAGCTTTAGGCAGC
GAGGTACCGCCGTTCCCTTTCATTTCGCATTTGCTTCGAGCCCATCCTCG
ATAG
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Coding sequence (CDS) from alignment at tig00000888_pilon:1018690..1019993-

>Ggra10728.t1 ID=Ggra10728.t1|Name=Ggra10728.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1179bp|location=Sequence derived from alignment at tig00000888_pilon:1018690..1019993- (Gracilaria gracilis GNS1m male)
ATGGCTGCAAACAGAGTACGCGATTCGCATGGACGCTGCCGACTCAGCCA
TCAGAGTGTACGCGATCTCAGAACCTGGAAGAAACTATCTGGCAGGGACC
TGGAAGGCCGTTCAATACATTCACTTCCTCCTACCGCTTCAATTCATTCA
GATGCGGCGGACGTGGGTTATGGTGGAATATTACACCTCCAGGACATGGG
CGCTGGTCGCCCTGGGCTGTGGGCCGCCCAGGGCATCTGGGACTGGCGAG
ACCGTGTTTGCACTATTACCAACCGCGAACTGAAGGCCGCCAGTGATGAG
GGAGTTTCGCCGTTTGAAACGGGTTCTCGACGCAAGAAATCTATATATTT
GTTCGGACTGGCTTCCTTCGGTAGCAAACAAGTTTGCAGACGCTCTTTCG
CGGCGATTCCCCCGCGGAGACCTCCGGATCAGGTGGCAGCTGCGGCGTTC
CGTGCGGGCTGGTATGGGCGCAGCTCGAGACGCATTCCAATACAGACCGC
TCGGAGAGCATCCCGTGTTTCTACGCAGGCAGTCATGGGCGGAGTTAGAG
GCAATTCGGGACCCCAACGAAGTTCGTCTTCTGTGTCCACCCGTGGATTA
AATCACGCCGACACTGATAGAGTTGCGCCGGACAGGATCACCGGCCCTAC
TGCTGATACCAAAATGGAAACGGCAGCCGTGGTACTGGACCGCACTTCGG
ATGGCCTCAAAAGTCGAAGAATTGTCAACGCCATCAGACCACGTTTGGGA
CGCCCAGAGGAGCCTCAATCCTCGCTGGCGCGTGCTACTACTAGATATGA
ATCTGTAACAATGGAGATGCTGGCTGCTGGTCGCCTTAGAGAAAGCGCAG
CTTCCAGCGCTGCTATGCACCGCTCTACCCGATTGCTAGTGGAGCATGGT
TGGGCTCGGCGTACAAGCAGATCCCGCGATACCCAATGGCGCACTTTCAC
CGCTTTTTGTCGATCGGACAATCTCAACCCTCTTCTTGTTACTGAAGCTC
ACTTGGCCGCTTTTATTGGATGGGTGACTGAAGAACGAGAAGCTGGTCGT
CGTAACATTGGTAGCTCCTCTCTGCCGCAGTATCTTTCTGTAATACGACA
ACGTCATCTTGCAGCTTTAGGCAGCGAGGTACCGCCGTTCCCTTTCATTT
CGCATTTGCTTCGAGCCCATCCTCGATAG
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