Ggra1072.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra1072.t1
Unique NameGgra1072.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length156
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000868_piloncontigtig00000868_pilon:104939..105406 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog74547.PMT_1527
PFAMsDUF448
Max annot lvl1117|Cyanobacteria
KEGG koko:K07742
Evalue1.11e-09
EggNOG OGsCOG2740@1|root,COG2740@2|Bacteria,1GEC7@1117|Cyanobacteria,1MN2W@1212|Prochloraceae
Descriptionnucleic-acid-binding protein implicated in transcription termination
COG categoryK
BRITEko00000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1072Ggra1072Gracilaria gracilis GNS1m malegenetig00000868_pilon 104939..105406 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1072.t1.start1Ggra1072.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000868_pilon 104939..104941 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1072.t1.CDS1Ggra1072.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000868_pilon 104939..105406 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1072.t1.exon1Ggra1072.t1.exon1Gracilaria gracilis GNS1m maleexontig00000868_pilon 104939..105406 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1072.t1.stop1Ggra1072.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000868_pilon 105404..105406 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1072.t1Ggra1072.t1Gracilaria gracilis GNS1m malepolypeptidetig00000868_pilon 104939..105406 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra1072.t1 ID=Ggra1072.t1|Name=Ggra1072.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=156bp
MTFVPADKDFPRRTNRLAFLSPICRIPGPRQGRDVRMCVVVRERLPRSLL
WQVVRVKSDEGRHVVKVGKGEGRSAFVSKDYHSVTESLKRKRLSKALRCS
VPEHIGEELQKLARKWDTVPLCERGLVYAEVYGTEGTYAAVDEVQGPCPL
TLDPL*
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spliced messenger RNA

>Ggra1072.t1 ID=Ggra1072.t1|Name=Ggra1072.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=468bp|location=Sequence derived from alignment at tig00000868_pilon:104939..105406+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACTTTCGTCCCCGCGGATAAGGATTTCCCGAGAAGAACAAACCGGCT
GGCTTTCTTGTCCCCAATATGTCGTATCCCTGGTCCTAGACAAGGTAGAG
ATGTGCGCATGTGTGTGGTGGTTCGGGAGCGTTTGCCTCGAAGTTTGCTC
TGGCAAGTAGTTCGTGTCAAAAGTGACGAGGGTCGTCATGTTGTGAAAGT
GGGAAAAGGAGAAGGGCGATCAGCGTTTGTTTCCAAAGACTATCACAGTG
TAACGGAAAGTCTGAAACGAAAGCGGCTGTCAAAAGCATTGCGGTGCTCC
GTGCCAGAACATATTGGTGAAGAGCTTCAGAAGCTTGCAAGAAAATGGGA
TACCGTTCCGCTATGTGAGCGAGGTTTGGTGTATGCGGAAGTGTATGGGA
CCGAAGGGACGTATGCAGCCGTGGATGAAGTTCAAGGACCATGTCCACTT
ACTCTTGATCCTCTCTGA
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protein sequence of Ggra1072.t1

>Ggra1072.t1 ID=Ggra1072.t1|Name=Ggra1072.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=156bp
MTFVPADKDFPRRTNRLAFLSPICRIPGPRQGRDVRMCVVVRERLPRSLL
WQVVRVKSDEGRHVVKVGKGEGRSAFVSKDYHSVTESLKRKRLSKALRCS
VPEHIGEELQKLARKWDTVPLCERGLVYAEVYGTEGTYAAVDEVQGPCPL
TLDPL*
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mRNA from alignment at tig00000868_pilon:104939..105406+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra1072.t1 ID=Ggra1072.t1|Name=Ggra1072.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=468bp|location=Sequence derived from alignment at tig00000868_pilon:104939..105406+ (Gracilaria gracilis GNS1m male)
ATGACTTTCGTCCCCGCGGATAAGGATTTCCCGAGAAGAACAAACCGGCT
GGCTTTCTTGTCCCCAATATGTCGTATCCCTGGTCCTAGACAAGGTAGAG
ATGTGCGCATGTGTGTGGTGGTTCGGGAGCGTTTGCCTCGAAGTTTGCTC
TGGCAAGTAGTTCGTGTCAAAAGTGACGAGGGTCGTCATGTTGTGAAAGT
GGGAAAAGGAGAAGGGCGATCAGCGTTTGTTTCCAAAGACTATCACAGTG
TAACGGAAAGTCTGAAACGAAAGCGGCTGTCAAAAGCATTGCGGTGCTCC
GTGCCAGAACATATTGGTGAAGAGCTTCAGAAGCTTGCAAGAAAATGGGA
TACCGTTCCGCTATGTGAGCGAGGTTTGGTGTATGCGGAAGTGTATGGGA
CCGAAGGGACGTATGCAGCCGTGGATGAAGTTCAAGGACCATGTCCACTT
ACTCTTGATCCTCTCTGA
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Coding sequence (CDS) from alignment at tig00000868_pilon:104939..105406+

>Ggra1072.t1 ID=Ggra1072.t1|Name=Ggra1072.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=468bp|location=Sequence derived from alignment at tig00000868_pilon:104939..105406+ (Gracilaria gracilis GNS1m male)
ATGACTTTCGTCCCCGCGGATAAGGATTTCCCGAGAAGAACAAACCGGCT
GGCTTTCTTGTCCCCAATATGTCGTATCCCTGGTCCTAGACAAGGTAGAG
ATGTGCGCATGTGTGTGGTGGTTCGGGAGCGTTTGCCTCGAAGTTTGCTC
TGGCAAGTAGTTCGTGTCAAAAGTGACGAGGGTCGTCATGTTGTGAAAGT
GGGAAAAGGAGAAGGGCGATCAGCGTTTGTTTCCAAAGACTATCACAGTG
TAACGGAAAGTCTGAAACGAAAGCGGCTGTCAAAAGCATTGCGGTGCTCC
GTGCCAGAACATATTGGTGAAGAGCTTCAGAAGCTTGCAAGAAAATGGGA
TACCGTTCCGCTATGTGAGCGAGGTTTGGTGTATGCGGAAGTGTATGGGA
CCGAAGGGACGTATGCAGCCGTGGATGAAGTTCAAGGACCATGTCCACTT
ACTCTTGATCCTCTCTGA
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