Ggra10710.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra10710.t1
Unique NameGgra10710.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length163
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000888_piloncontigtig00000888_pilon:618329..619023 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra10710Ggra10710Gracilaria gracilis GNS1m malegenetig00000888_pilon 618329..619023 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10710.t1Ggra10710.t1Gracilaria gracilis GNS1m malepolypeptidetig00000888_pilon 618329..619023 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10710.t1.stop1Ggra10710.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000888_pilon 618329..618331 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10710.t1.CDS1Ggra10710.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000888_pilon 618329..618567 -
Ggra10710.t1.CDS2Ggra10710.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000888_pilon 618652..618698 -
Ggra10710.t1.CDS3Ggra10710.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000888_pilon 618821..619023 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10710.t1.exon1Ggra10710.t1.exon1Gracilaria gracilis GNS1m maleexontig00000888_pilon 618329..618567 -
Ggra10710.t1.exon2Ggra10710.t1.exon2Gracilaria gracilis GNS1m maleexontig00000888_pilon 618652..618698 -
Ggra10710.t1.exon3Ggra10710.t1.exon3Gracilaria gracilis GNS1m maleexontig00000888_pilon 618821..619023 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10710.t1.intron1Ggra10710.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000888_pilon 618568..618651 -
Ggra10710.t1.intron2Ggra10710.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000888_pilon 618699..618820 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10710.t1.start1Ggra10710.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000888_pilon 619021..619023 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra10710.t1 ID=Ggra10710.t1|Name=Ggra10710.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=163bp
MDRHPRPRNQRRTGGKNTSGKRRASKELADSQHHEYESDEILPLPGRQQK
YRHVPAKKKLRRGSRSMKCNLSGTPFVLSFLLNAKTKKVARKHWLKLRMS
TSSHLKGMPNLLVLFKLSRYSVATQSESHSRIQPQRRSFLLHSIQNVSIL
LLQRHEMKEMEH*
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spliced messenger RNA

>Ggra10710.t1 ID=Ggra10710.t1|Name=Ggra10710.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=489bp|location=Sequence derived from alignment at tig00000888_pilon:618329..619023- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGATAGGCATCCACGCCCACGCAATCAAAGACGTACCGGTGGAAAGAA
CACTTCAGGAAAGCGCAGAGCGAGTAAAGAATTGGCAGATTCTCAACATC
ATGAATATGAAAGTGATGAAATACTGCCCTTGCCTGGTCGTCAGCAGAAA
TACCGCCATGTTCCCGCGAAGAAGAAACTTCGCAGGGGTTCTCGTTCAAT
GAAATGTAACCTGAGCGGCACGCCCTTCGTACTTTCGTTCCTTCTGAATG
CAAAGACGAAGAAAGTGGCACGAAAGCATTGGCTCAAGCTCCGGATGTCA
ACCTCTTCACATTTAAAGGGTATGCCAAACCTGCTCGTGCTGTTCAAACT
GTCCAGATATTCAGTTGCCACCCAATCGGAGTCCCATAGTCGTATTCAAC
CACAACGCAGATCTTTCCTTTTGCATTCCATCCAGAACGTAAGTATCCTG
CTTCTACAACGCCATGAAATGAAGGAAATGGAACACTGA
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protein sequence of Ggra10710.t1

>Ggra10710.t1 ID=Ggra10710.t1|Name=Ggra10710.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=163bp
MDRHPRPRNQRRTGGKNTSGKRRASKELADSQHHEYESDEILPLPGRQQK
YRHVPAKKKLRRGSRSMKCNLSGTPFVLSFLLNAKTKKVARKHWLKLRMS
TSSHLKGMPNLLVLFKLSRYSVATQSESHSRIQPQRRSFLLHSIQNVSIL
LLQRHEMKEMEH*
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mRNA from alignment at tig00000888_pilon:618329..619023-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra10710.t1 ID=Ggra10710.t1|Name=Ggra10710.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=695bp|location=Sequence derived from alignment at tig00000888_pilon:618329..619023- (Gracilaria gracilis GNS1m male)
ATGGATAGGCATCCACGCCCACGCAATCAAAGACGTACCGGTGGAAAGAA
CACTTCAGGAAAGCGCAGAGCGAGTAAAGAATTGGCAGATTCTCAACATC
ATGAATATGAAAGTGATGAAATACTGCCCTTGCCTGGTCGTCAGCAGAAA
TACCGCCATGTTCCCGCGAAGAAGAAACTTCGCAGGGGTTCTCGTTCAAT
GAAGTACGTGAAACCGCTGCTCGAGATTCCACAATCAGATGAAGAAGAGA
CGGACAGTGGTTCTGAAGAAGTGGAAAGGTGATGTGAACCACACCGACGT
TCTGCCATGCGTTGAAGTTCTAGAGATGTAACCTGAGCGGCACGCCCTTC
GTACTTTCGTTCCTTCTGAATGGTAAGCCTGAGTTATTTTTGCATTGACA
TCTGCGGTGGGTCGGATGGCAAGTAACTAACTTCAAACGTGTCATTATTT
GATCAGCAAAGACGAAGAAAGTGGCACGAAAGCATTGGCTCAAGCTCCGG
ATGTCAACCTCTTCACATTTAAAGGGTATGCCAAACCTGCTCGTGCTGTT
CAAACTGTCCAGATATTCAGTTGCCACCCAATCGGAGTCCCATAGTCGTA
TTCAACCACAACGCAGATCTTTCCTTTTGCATTCCATCCAGAACGTAAGT
ATCCTGCTTCTACAACGCCATGAAATGAAGGAAATGGAACACTGA
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Coding sequence (CDS) from alignment at tig00000888_pilon:618329..619023-

>Ggra10710.t1 ID=Ggra10710.t1|Name=Ggra10710.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=489bp|location=Sequence derived from alignment at tig00000888_pilon:618329..619023- (Gracilaria gracilis GNS1m male)
ATGGATAGGCATCCACGCCCACGCAATCAAAGACGTACCGGTGGAAAGAA
CACTTCAGGAAAGCGCAGAGCGAGTAAAGAATTGGCAGATTCTCAACATC
ATGAATATGAAAGTGATGAAATACTGCCCTTGCCTGGTCGTCAGCAGAAA
TACCGCCATGTTCCCGCGAAGAAGAAACTTCGCAGGGGTTCTCGTTCAAT
GAAATGTAACCTGAGCGGCACGCCCTTCGTACTTTCGTTCCTTCTGAATG
CAAAGACGAAGAAAGTGGCACGAAAGCATTGGCTCAAGCTCCGGATGTCA
ACCTCTTCACATTTAAAGGGTATGCCAAACCTGCTCGTGCTGTTCAAACT
GTCCAGATATTCAGTTGCCACCCAATCGGAGTCCCATAGTCGTATTCAAC
CACAACGCAGATCTTTCCTTTTGCATTCCATCCAGAACGTAAGTATCCTG
CTTCTACAACGCCATGAAATGAAGGAAATGGAACACTGA
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