Ggra10701.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra10701.t1
Unique NameGgra10701.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length450
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000888_piloncontigtig00000888_pilon:476218..477567 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog2880.D8LQ42
PFAMsFea1
Max annot lvl2759|Eukaryota
Evalue8.14e-64
EggNOG OGs29F58@1|root,2RNAK@2759|Eukaryota
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra10701Ggra10701Gracilaria gracilis GNS1m malegenetig00000888_pilon 476218..477567 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10701.t1.stop1Ggra10701.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000888_pilon 476218..476220 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10701.t1.CDS1Ggra10701.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000888_pilon 476218..477567 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10701.t1.exon1Ggra10701.t1.exon1Gracilaria gracilis GNS1m maleexontig00000888_pilon 476218..477567 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10701.t1.start1Ggra10701.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000888_pilon 477565..477567 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10701.t1Ggra10701.t1Gracilaria gracilis GNS1m malepolypeptidetig00000888_pilon 476218..477567 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra10701.t1 ID=Ggra10701.t1|Name=Ggra10701.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=450bp
MNPRSRAHRALLLVALLSILKISFALNGTTIGPYTFRTDVTEHSEIDLDQ
RELEEELDEATPDYSGAETIYQAGANSEKSSSKRTLRGFSTEAGTKLRGE
GFYELFVDFYGSDTYADNFVQGALKGTGRFSGTEDKFRSQCAKKGSQYQN
VWMYIIHEMEDAINDCEAGTPTENDDPAVEAWDEAVAFYTGSIVLADDDS
QGASGTLIYTLAQKRAVNFDTVEGSTGSSITNNEVLRLFTQGQQQLRNRA
CQEAVQTKNEIVQLMTIPVVQSIMRYIVLGKTTQNVNSHGEGWAFVRAVQ
PLIANCDQGVSKTLEENFKPELESPMPGSVEDVSRQLQSVYNCLGFRCED
VGRYQSSEGELPTAQCIDSGESVKVIEGTTRPSKQNAAATTDGSAGENDG
GVSGGTIAGIVIGVLVVGAMAVLASVWLRRRRTVKAAGFMSSADMPVDA*
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spliced messenger RNA

>Ggra10701.t1 ID=Ggra10701.t1|Name=Ggra10701.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1350bp|location=Sequence derived from alignment at tig00000888_pilon:476218..477567- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAACCCTCGCTCTCGCGCGCACAGGGCGCTGCTGCTCGTTGCGCTGCT
ATCGATCCTGAAGATCTCCTTCGCGCTGAACGGTACCACGATCGGCCCCT
ATACATTTCGCACAGACGTCACGGAACACTCCGAGATCGACCTGGACCAA
CGGGAATTGGAAGAAGAACTCGACGAGGCCACACCCGATTACTCCGGTGC
AGAGACCATTTATCAGGCCGGTGCCAACTCCGAGAAGTCCAGTTCCAAAC
GCACGCTGCGCGGCTTTTCGACAGAGGCGGGTACAAAGCTTCGTGGAGAG
GGTTTTTACGAACTGTTTGTCGACTTTTATGGCTCCGATACATATGCCGA
TAACTTTGTGCAAGGCGCTCTTAAGGGTACGGGCAGGTTTTCCGGAACCG
AAGACAAATTCCGCTCCCAGTGCGCCAAAAAGGGCTCGCAGTACCAGAAT
GTGTGGATGTACATCATTCACGAGATGGAAGACGCTATCAATGACTGCGA
GGCCGGCACTCCCACCGAAAACGATGACCCTGCCGTCGAGGCCTGGGACG
AGGCTGTTGCGTTTTACACGGGCAGTATCGTGTTGGCGGATGACGATTCG
CAGGGTGCATCCGGAACCCTTATCTATACGCTTGCGCAGAAGCGCGCCGT
CAACTTTGATACCGTTGAAGGAAGTACCGGCTCGTCCATCACTAACAACG
AAGTGCTCCGGTTGTTCACACAGGGCCAGCAGCAGTTGCGGAACAGAGCC
TGTCAGGAAGCCGTCCAAACCAAGAACGAAATTGTTCAACTGATGACCAT
TCCGGTTGTACAGAGCATCATGCGCTACATCGTTCTTGGAAAGACGACCC
AGAATGTCAATTCGCACGGAGAGGGCTGGGCATTCGTTCGGGCGGTTCAG
CCGCTCATTGCGAACTGTGACCAAGGCGTGTCCAAAACGCTGGAGGAGAA
CTTCAAACCAGAACTTGAAAGTCCTATGCCCGGCTCCGTGGAGGACGTCA
GCAGGCAGCTGCAAAGCGTGTACAACTGCCTCGGCTTCAGGTGCGAGGAT
GTGGGTCGCTATCAAAGCAGCGAGGGCGAGCTGCCGACCGCGCAGTGCAT
CGACAGCGGCGAGAGCGTTAAGGTTATTGAAGGAACTACTAGACCATCGA
AGCAAAACGCCGCCGCCACTACTGATGGCAGTGCCGGCGAGAACGACGGT
GGTGTTTCTGGCGGCACCATTGCGGGCATTGTCATTGGCGTGTTGGTCGT
TGGTGCCATGGCCGTGCTGGCGTCGGTGTGGCTTCGACGCAGGAGGACGG
TGAAGGCGGCTGGCTTCATGTCGAGCGCCGATATGCCGGTTGACGCTTAA
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protein sequence of Ggra10701.t1

>Ggra10701.t1 ID=Ggra10701.t1|Name=Ggra10701.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=450bp
MNPRSRAHRALLLVALLSILKISFALNGTTIGPYTFRTDVTEHSEIDLDQ
RELEEELDEATPDYSGAETIYQAGANSEKSSSKRTLRGFSTEAGTKLRGE
GFYELFVDFYGSDTYADNFVQGALKGTGRFSGTEDKFRSQCAKKGSQYQN
VWMYIIHEMEDAINDCEAGTPTENDDPAVEAWDEAVAFYTGSIVLADDDS
QGASGTLIYTLAQKRAVNFDTVEGSTGSSITNNEVLRLFTQGQQQLRNRA
CQEAVQTKNEIVQLMTIPVVQSIMRYIVLGKTTQNVNSHGEGWAFVRAVQ
PLIANCDQGVSKTLEENFKPELESPMPGSVEDVSRQLQSVYNCLGFRCED
VGRYQSSEGELPTAQCIDSGESVKVIEGTTRPSKQNAAATTDGSAGENDG
GVSGGTIAGIVIGVLVVGAMAVLASVWLRRRRTVKAAGFMSSADMPVDA*
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mRNA from alignment at tig00000888_pilon:476218..477567-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra10701.t1 ID=Ggra10701.t1|Name=Ggra10701.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1350bp|location=Sequence derived from alignment at tig00000888_pilon:476218..477567- (Gracilaria gracilis GNS1m male)
ATGAACCCTCGCTCTCGCGCGCACAGGGCGCTGCTGCTCGTTGCGCTGCT
ATCGATCCTGAAGATCTCCTTCGCGCTGAACGGTACCACGATCGGCCCCT
ATACATTTCGCACAGACGTCACGGAACACTCCGAGATCGACCTGGACCAA
CGGGAATTGGAAGAAGAACTCGACGAGGCCACACCCGATTACTCCGGTGC
AGAGACCATTTATCAGGCCGGTGCCAACTCCGAGAAGTCCAGTTCCAAAC
GCACGCTGCGCGGCTTTTCGACAGAGGCGGGTACAAAGCTTCGTGGAGAG
GGTTTTTACGAACTGTTTGTCGACTTTTATGGCTCCGATACATATGCCGA
TAACTTTGTGCAAGGCGCTCTTAAGGGTACGGGCAGGTTTTCCGGAACCG
AAGACAAATTCCGCTCCCAGTGCGCCAAAAAGGGCTCGCAGTACCAGAAT
GTGTGGATGTACATCATTCACGAGATGGAAGACGCTATCAATGACTGCGA
GGCCGGCACTCCCACCGAAAACGATGACCCTGCCGTCGAGGCCTGGGACG
AGGCTGTTGCGTTTTACACGGGCAGTATCGTGTTGGCGGATGACGATTCG
CAGGGTGCATCCGGAACCCTTATCTATACGCTTGCGCAGAAGCGCGCCGT
CAACTTTGATACCGTTGAAGGAAGTACCGGCTCGTCCATCACTAACAACG
AAGTGCTCCGGTTGTTCACACAGGGCCAGCAGCAGTTGCGGAACAGAGCC
TGTCAGGAAGCCGTCCAAACCAAGAACGAAATTGTTCAACTGATGACCAT
TCCGGTTGTACAGAGCATCATGCGCTACATCGTTCTTGGAAAGACGACCC
AGAATGTCAATTCGCACGGAGAGGGCTGGGCATTCGTTCGGGCGGTTCAG
CCGCTCATTGCGAACTGTGACCAAGGCGTGTCCAAAACGCTGGAGGAGAA
CTTCAAACCAGAACTTGAAAGTCCTATGCCCGGCTCCGTGGAGGACGTCA
GCAGGCAGCTGCAAAGCGTGTACAACTGCCTCGGCTTCAGGTGCGAGGAT
GTGGGTCGCTATCAAAGCAGCGAGGGCGAGCTGCCGACCGCGCAGTGCAT
CGACAGCGGCGAGAGCGTTAAGGTTATTGAAGGAACTACTAGACCATCGA
AGCAAAACGCCGCCGCCACTACTGATGGCAGTGCCGGCGAGAACGACGGT
GGTGTTTCTGGCGGCACCATTGCGGGCATTGTCATTGGCGTGTTGGTCGT
TGGTGCCATGGCCGTGCTGGCGTCGGTGTGGCTTCGACGCAGGAGGACGG
TGAAGGCGGCTGGCTTCATGTCGAGCGCCGATATGCCGGTTGACGCTTAA
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Coding sequence (CDS) from alignment at tig00000888_pilon:476218..477567-

>Ggra10701.t1 ID=Ggra10701.t1|Name=Ggra10701.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1350bp|location=Sequence derived from alignment at tig00000888_pilon:476218..477567- (Gracilaria gracilis GNS1m male)
ATGAACCCTCGCTCTCGCGCGCACAGGGCGCTGCTGCTCGTTGCGCTGCT
ATCGATCCTGAAGATCTCCTTCGCGCTGAACGGTACCACGATCGGCCCCT
ATACATTTCGCACAGACGTCACGGAACACTCCGAGATCGACCTGGACCAA
CGGGAATTGGAAGAAGAACTCGACGAGGCCACACCCGATTACTCCGGTGC
AGAGACCATTTATCAGGCCGGTGCCAACTCCGAGAAGTCCAGTTCCAAAC
GCACGCTGCGCGGCTTTTCGACAGAGGCGGGTACAAAGCTTCGTGGAGAG
GGTTTTTACGAACTGTTTGTCGACTTTTATGGCTCCGATACATATGCCGA
TAACTTTGTGCAAGGCGCTCTTAAGGGTACGGGCAGGTTTTCCGGAACCG
AAGACAAATTCCGCTCCCAGTGCGCCAAAAAGGGCTCGCAGTACCAGAAT
GTGTGGATGTACATCATTCACGAGATGGAAGACGCTATCAATGACTGCGA
GGCCGGCACTCCCACCGAAAACGATGACCCTGCCGTCGAGGCCTGGGACG
AGGCTGTTGCGTTTTACACGGGCAGTATCGTGTTGGCGGATGACGATTCG
CAGGGTGCATCCGGAACCCTTATCTATACGCTTGCGCAGAAGCGCGCCGT
CAACTTTGATACCGTTGAAGGAAGTACCGGCTCGTCCATCACTAACAACG
AAGTGCTCCGGTTGTTCACACAGGGCCAGCAGCAGTTGCGGAACAGAGCC
TGTCAGGAAGCCGTCCAAACCAAGAACGAAATTGTTCAACTGATGACCAT
TCCGGTTGTACAGAGCATCATGCGCTACATCGTTCTTGGAAAGACGACCC
AGAATGTCAATTCGCACGGAGAGGGCTGGGCATTCGTTCGGGCGGTTCAG
CCGCTCATTGCGAACTGTGACCAAGGCGTGTCCAAAACGCTGGAGGAGAA
CTTCAAACCAGAACTTGAAAGTCCTATGCCCGGCTCCGTGGAGGACGTCA
GCAGGCAGCTGCAAAGCGTGTACAACTGCCTCGGCTTCAGGTGCGAGGAT
GTGGGTCGCTATCAAAGCAGCGAGGGCGAGCTGCCGACCGCGCAGTGCAT
CGACAGCGGCGAGAGCGTTAAGGTTATTGAAGGAACTACTAGACCATCGA
AGCAAAACGCCGCCGCCACTACTGATGGCAGTGCCGGCGAGAACGACGGT
GGTGTTTCTGGCGGCACCATTGCGGGCATTGTCATTGGCGTGTTGGTCGT
TGGTGCCATGGCCGTGCTGGCGTCGGTGTGGCTTCGACGCAGGAGGACGG
TGAAGGCGGCTGGCTTCATGTCGAGCGCCGATATGCCGGTTGACGCTTAA
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