Ggra10698.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra10698.t1
Unique Name	Ggra10698.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	498

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000888_pilon	contig	tig00000888_pilon:447794..449287 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra10698	Ggra10698	Gracilaria gracilis GNS1m male	gene	tig00000888_pilon 447794..449287 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra10698.t1.stop1	Ggra10698.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000888_pilon 447794..447796 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra10698.t1.CDS1	Ggra10698.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000888_pilon 447794..449287 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra10698.t1.exon1	Ggra10698.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000888_pilon 447794..449287 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra10698.t1.start1	Ggra10698.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000888_pilon 449285..449287 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra10698.t1	Ggra10698.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000888_pilon 447794..449287 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000888_pilon:447794..449287-
coding sequence from alignment at tig00000888_pilon:447794..449287-

mRNA sequence

>Ggra10698.t1 ID=Ggra10698.t1|Name=Ggra10698.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=498bp
MRGMRQTISGLEYPPKEISTERPTKRRSGLLSGRWLSGGHCNHDDGERGE
RASSHRESSLWNSLFRPTQSQPAATRSPSFHQSLNGTADRATDPAIPARE
PGHDQSTSIEDEEGQDRPAKSQELRRIGVPVRDGVPRPRVRRYRLIAPII
IRFTVLTLELGAIYFSSNITNDVCAGRSFNVRLTERDTPGNISSELCRTL
IEDAKGIEQKGSVLLCMGRREERITSSKREGTKMYFFFSPSLNEVEFRVQ
DEFVVVTSVYVEVFLNLMNDANVQLAPLRPDLDVDDNYSKRILFDIMDRA
MNKLGANVTINQIEEEVSQDGEIIYEYPRLFNEFSRDQISNALLREMQKL
TLHLNVTQPGEEDVLYVFKPDRGYFRHENPQIAVVAKTRLAQGWFMIAWT
SLLLTRLIAQLFFTTFDEVAYPAVKRIHGADLAIGPMARVEKRESLQISK
FSDGTVGHIGYRKANDRQDHVENFYGCEIVLGRAEGVAKGGEESVGS*

spliced messenger RNA

>Ggra10698.t1 ID=Ggra10698.t1|Name=Ggra10698.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1494bp|location=Sequence derived from alignment at tig00000888_pilon:447794..449287- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGGGGAATGCGGCAGACGATTTCGGGCTTGGAGTATCCGCCGAAGGA
GATCAGCACGGAGAGACCGACGAAGCGTAGATCAGGGCTGTTGTCTGGCA
GGTGGCTCAGTGGTGGCCATTGTAATCATGATGATGGAGAGCGTGGTGAA
CGTGCTTCATCGCATCGTGAGAGTTCGCTCTGGAATTCTCTGTTCCGGCC
TACCCAGTCTCAGCCTGCAGCAACTCGCAGCCCTTCTTTCCACCAATCTT
TGAATGGCACCGCAGACAGGGCTACAGACCCTGCAATACCAGCCCGTGAA
CCAGGACATGATCAATCAACCAGCATTGAGGACGAAGAGGGGCAGGACAG
GCCAGCAAAATCACAGGAGCTACGTCGCATAGGAGTTCCCGTTCGCGACG
GAGTACCGCGACCCCGAGTAAGACGCTATCGACTTATAGCCCCAATCATA
ATTCGTTTCACGGTACTCACATTGGAACTAGGCGCTATCTACTTCAGCTC
AAATATCACAAACGATGTGTGTGCAGGTCGTTCCTTCAATGTACGTCTCA
CCGAAAGAGATACGCCGGGCAATATAAGTTCGGAACTGTGCAGAACGTTG
ATCGAAGATGCCAAGGGCATTGAGCAGAAAGGTTCAGTTTTGCTTTGTAT
GGGAAGGCGCGAGGAAAGAATTACATCTTCCAAACGAGAAGGTACGAAAA
TGTACTTCTTCTTTTCGCCTTCTTTAAACGAAGTGGAATTTCGTGTACAG
GATGAGTTTGTCGTGGTTACCTCTGTTTATGTGGAGGTCTTCCTGAACTT
GATGAACGATGCTAATGTACAATTGGCACCGTTACGACCAGACTTGGATG
TTGACGACAATTATTCAAAGAGAATCCTCTTCGATATTATGGATCGCGCG
ATGAACAAGCTGGGGGCTAATGTGACCATTAATCAGATTGAAGAAGAAGT
TTCACAAGATGGAGAAATTATATATGAGTATCCTCGTCTCTTTAATGAAT
TTTCCCGCGACCAAATTAGTAACGCGTTGTTAAGAGAAATGCAAAAGCTT
ACATTGCATCTGAATGTGACGCAGCCAGGAGAAGAAGACGTTTTGTACGT
CTTCAAACCAGACAGAGGCTATTTCAGACACGAAAATCCTCAGATCGCGG
TGGTGGCCAAAACTCGATTGGCGCAAGGTTGGTTTATGATTGCTTGGACA
AGCTTGCTACTCACTCGACTAATTGCGCAGTTGTTCTTCACAACGTTTGA
CGAAGTGGCGTATCCGGCAGTGAAGAGAATTCATGGGGCCGATTTAGCAA
TCGGGCCCATGGCAAGGGTGGAGAAAAGAGAGTCGTTGCAGATTAGCAAG
TTTTCGGATGGAACTGTGGGACACATTGGGTATAGAAAAGCAAATGACAG
ACAGGATCATGTGGAGAACTTTTATGGGTGCGAGATTGTTTTGGGACGAG
CGGAGGGTGTAGCCAAAGGAGGTGAGGAGAGCGTTGGAAGTTAG

protein sequence of Ggra10698.t1

>Ggra10698.t1 ID=Ggra10698.t1|Name=Ggra10698.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=498bp
MRGMRQTISGLEYPPKEISTERPTKRRSGLLSGRWLSGGHCNHDDGERGE
RASSHRESSLWNSLFRPTQSQPAATRSPSFHQSLNGTADRATDPAIPARE
PGHDQSTSIEDEEGQDRPAKSQELRRIGVPVRDGVPRPRVRRYRLIAPII
IRFTVLTLELGAIYFSSNITNDVCAGRSFNVRLTERDTPGNISSELCRTL
IEDAKGIEQKGSVLLCMGRREERITSSKREGTKMYFFFSPSLNEVEFRVQ
DEFVVVTSVYVEVFLNLMNDANVQLAPLRPDLDVDDNYSKRILFDIMDRA
MNKLGANVTINQIEEEVSQDGEIIYEYPRLFNEFSRDQISNALLREMQKL
TLHLNVTQPGEEDVLYVFKPDRGYFRHENPQIAVVAKTRLAQGWFMIAWT
SLLLTRLIAQLFFTTFDEVAYPAVKRIHGADLAIGPMARVEKRESLQISK
FSDGTVGHIGYRKANDRQDHVENFYGCEIVLGRAEGVAKGGEESVGS*

mRNA from alignment at tig00000888_pilon:447794..449287-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra10698.t1 ID=Ggra10698.t1|Name=Ggra10698.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1494bp|location=Sequence derived from alignment at tig00000888_pilon:447794..449287- (Gracilaria gracilis GNS1m male)
ATGAGGGGAATGCGGCAGACGATTTCGGGCTTGGAGTATCCGCCGAAGGA
GATCAGCACGGAGAGACCGACGAAGCGTAGATCAGGGCTGTTGTCTGGCA
GGTGGCTCAGTGGTGGCCATTGTAATCATGATGATGGAGAGCGTGGTGAA
CGTGCTTCATCGCATCGTGAGAGTTCGCTCTGGAATTCTCTGTTCCGGCC
TACCCAGTCTCAGCCTGCAGCAACTCGCAGCCCTTCTTTCCACCAATCTT
TGAATGGCACCGCAGACAGGGCTACAGACCCTGCAATACCAGCCCGTGAA
CCAGGACATGATCAATCAACCAGCATTGAGGACGAAGAGGGGCAGGACAG
GCCAGCAAAATCACAGGAGCTACGTCGCATAGGAGTTCCCGTTCGCGACG
GAGTACCGCGACCCCGAGTAAGACGCTATCGACTTATAGCCCCAATCATA
ATTCGTTTCACGGTACTCACATTGGAACTAGGCGCTATCTACTTCAGCTC
AAATATCACAAACGATGTGTGTGCAGGTCGTTCCTTCAATGTACGTCTCA
CCGAAAGAGATACGCCGGGCAATATAAGTTCGGAACTGTGCAGAACGTTG
ATCGAAGATGCCAAGGGCATTGAGCAGAAAGGTTCAGTTTTGCTTTGTAT
GGGAAGGCGCGAGGAAAGAATTACATCTTCCAAACGAGAAGGTACGAAAA
TGTACTTCTTCTTTTCGCCTTCTTTAAACGAAGTGGAATTTCGTGTACAG
GATGAGTTTGTCGTGGTTACCTCTGTTTATGTGGAGGTCTTCCTGAACTT
GATGAACGATGCTAATGTACAATTGGCACCGTTACGACCAGACTTGGATG
TTGACGACAATTATTCAAAGAGAATCCTCTTCGATATTATGGATCGCGCG
ATGAACAAGCTGGGGGCTAATGTGACCATTAATCAGATTGAAGAAGAAGT
TTCACAAGATGGAGAAATTATATATGAGTATCCTCGTCTCTTTAATGAAT
TTTCCCGCGACCAAATTAGTAACGCGTTGTTAAGAGAAATGCAAAAGCTT
ACATTGCATCTGAATGTGACGCAGCCAGGAGAAGAAGACGTTTTGTACGT
CTTCAAACCAGACAGAGGCTATTTCAGACACGAAAATCCTCAGATCGCGG
TGGTGGCCAAAACTCGATTGGCGCAAGGTTGGTTTATGATTGCTTGGACA
AGCTTGCTACTCACTCGACTAATTGCGCAGTTGTTCTTCACAACGTTTGA
CGAAGTGGCGTATCCGGCAGTGAAGAGAATTCATGGGGCCGATTTAGCAA
TCGGGCCCATGGCAAGGGTGGAGAAAAGAGAGTCGTTGCAGATTAGCAAG
TTTTCGGATGGAACTGTGGGACACATTGGGTATAGAAAAGCAAATGACAG
ACAGGATCATGTGGAGAACTTTTATGGGTGCGAGATTGTTTTGGGACGAG
CGGAGGGTGTAGCCAAAGGAGGTGAGGAGAGCGTTGGAAGTTAG

Coding sequence (CDS) from alignment at tig00000888_pilon:447794..449287-

>Ggra10698.t1 ID=Ggra10698.t1|Name=Ggra10698.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1494bp|location=Sequence derived from alignment at tig00000888_pilon:447794..449287- (Gracilaria gracilis GNS1m male)
ATGAGGGGAATGCGGCAGACGATTTCGGGCTTGGAGTATCCGCCGAAGGA
GATCAGCACGGAGAGACCGACGAAGCGTAGATCAGGGCTGTTGTCTGGCA
GGTGGCTCAGTGGTGGCCATTGTAATCATGATGATGGAGAGCGTGGTGAA
CGTGCTTCATCGCATCGTGAGAGTTCGCTCTGGAATTCTCTGTTCCGGCC
TACCCAGTCTCAGCCTGCAGCAACTCGCAGCCCTTCTTTCCACCAATCTT
TGAATGGCACCGCAGACAGGGCTACAGACCCTGCAATACCAGCCCGTGAA
CCAGGACATGATCAATCAACCAGCATTGAGGACGAAGAGGGGCAGGACAG
GCCAGCAAAATCACAGGAGCTACGTCGCATAGGAGTTCCCGTTCGCGACG
GAGTACCGCGACCCCGAGTAAGACGCTATCGACTTATAGCCCCAATCATA
ATTCGTTTCACGGTACTCACATTGGAACTAGGCGCTATCTACTTCAGCTC
AAATATCACAAACGATGTGTGTGCAGGTCGTTCCTTCAATGTACGTCTCA
CCGAAAGAGATACGCCGGGCAATATAAGTTCGGAACTGTGCAGAACGTTG
ATCGAAGATGCCAAGGGCATTGAGCAGAAAGGTTCAGTTTTGCTTTGTAT
GGGAAGGCGCGAGGAAAGAATTACATCTTCCAAACGAGAAGGTACGAAAA
TGTACTTCTTCTTTTCGCCTTCTTTAAACGAAGTGGAATTTCGTGTACAG
GATGAGTTTGTCGTGGTTACCTCTGTTTATGTGGAGGTCTTCCTGAACTT
GATGAACGATGCTAATGTACAATTGGCACCGTTACGACCAGACTTGGATG
TTGACGACAATTATTCAAAGAGAATCCTCTTCGATATTATGGATCGCGCG
ATGAACAAGCTGGGGGCTAATGTGACCATTAATCAGATTGAAGAAGAAGT
TTCACAAGATGGAGAAATTATATATGAGTATCCTCGTCTCTTTAATGAAT
TTTCCCGCGACCAAATTAGTAACGCGTTGTTAAGAGAAATGCAAAAGCTT
ACATTGCATCTGAATGTGACGCAGCCAGGAGAAGAAGACGTTTTGTACGT
CTTCAAACCAGACAGAGGCTATTTCAGACACGAAAATCCTCAGATCGCGG
TGGTGGCCAAAACTCGATTGGCGCAAGGTTGGTTTATGATTGCTTGGACA
AGCTTGCTACTCACTCGACTAATTGCGCAGTTGTTCTTCACAACGTTTGA
CGAAGTGGCGTATCCGGCAGTGAAGAGAATTCATGGGGCCGATTTAGCAA
TCGGGCCCATGGCAAGGGTGGAGAAAAGAGAGTCGTTGCAGATTAGCAAG
TTTTCGGATGGAACTGTGGGACACATTGGGTATAGAAAAGCAAATGACAG
ACAGGATCATGTGGAGAACTTTTATGGGTGCGAGATTGTTTTGGGACGAG
CGGAGGGTGTAGCCAAAGGAGGTGAGGAGAGCGTTGGAAGTTAG