Ggra10693.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra10693.t1
Unique NameGgra10693.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length251
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000888_piloncontigtig00000888_pilon:272634..273386 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog3067.XP_002946011.1
PFAMsPeptidase_C1
Max annot lvl2759|Eukaryota
Evalue3.2e-09
EggNOG OGsCOG4870@1|root,2S8PN@2759|Eukaryota
DescriptionBelongs to the peptidase C1 family
COG categoryO
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra10693Ggra10693Gracilaria gracilis GNS1m malegenetig00000888_pilon 272634..273386 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10693.t1.start1Ggra10693.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000888_pilon 272634..272636 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10693.t1.CDS1Ggra10693.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000888_pilon 272634..273386 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10693.t1.exon1Ggra10693.t1.exon1Gracilaria gracilis GNS1m maleexontig00000888_pilon 272634..273386 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10693.t1.stop1Ggra10693.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000888_pilon 273384..273386 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10693.t1Ggra10693.t1Gracilaria gracilis GNS1m malepolypeptidetig00000888_pilon 272634..273386 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra10693.t1 ID=Ggra10693.t1|Name=Ggra10693.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=251bp
MNTLRYLIGFLCIATLVNAMELEDLSKLDIVKSVQFEENTIRQTETSQSS
NSTDVVKTFKRSQGRVTTTGISCRGICSVSMSYNVTINGVSSKYLNEKDS
RFRSLLTDTQRTKYDNAKKRYKGGLGVTFLRAVGINLGGRYSKGKVNELR
ERVENYESLAKEARNIMNSFERATVRVYGSMTVTSYTSVQSEAVAYVRSA
KVTLTDGRELRVVGASRRDVRVVDSNTGEELDNEDWIGGADQETDNGDIF
*
back to top

spliced messenger RNA

>Ggra10693.t1 ID=Ggra10693.t1|Name=Ggra10693.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=753bp|location=Sequence derived from alignment at tig00000888_pilon:272634..273386+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAACACTCTTCGCTACCTAATTGGTTTCCTCTGCATCGCCACTTTGGT
GAATGCCATGGAATTAGAAGATCTTTCGAAACTGGACATTGTCAAGAGTG
TGCAGTTCGAGGAGAATACAATTCGACAAACAGAGACATCGCAGAGTTCA
AACAGTACGGATGTTGTCAAGACCTTTAAGAGATCGCAAGGTCGCGTAAC
AACCACGGGGATTAGTTGCCGAGGAATTTGTTCCGTATCGATGTCATACA
ATGTGACTATTAACGGCGTGTCTTCCAAATATCTCAACGAGAAGGATAGC
AGGTTCCGCAGTCTTCTTACCGACACACAGAGGACTAAATACGACAATGC
GAAGAAGCGCTACAAAGGCGGGTTGGGCGTGACTTTCTTGCGCGCGGTTG
GCATCAATCTCGGCGGCCGATATTCCAAGGGTAAGGTGAATGAGCTCCGG
GAGCGCGTGGAGAACTACGAATCACTTGCGAAAGAGGCTCGTAACATCAT
GAACAGTTTTGAACGCGCGACAGTTCGCGTGTACGGCTCCATGACAGTTA
CGAGTTACACATCGGTGCAATCTGAGGCTGTTGCGTACGTGAGGTCCGCA
AAGGTTACGTTGACGGACGGCAGAGAGCTGCGCGTTGTCGGCGCCTCCCG
CCGCGATGTGAGGGTGGTTGACAGTAATACGGGCGAAGAGTTGGATAACG
AGGATTGGATTGGAGGCGCTGACCAGGAGACTGACAACGGTGATATCTTC
TAA
back to top

protein sequence of Ggra10693.t1

>Ggra10693.t1 ID=Ggra10693.t1|Name=Ggra10693.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=251bp
MNTLRYLIGFLCIATLVNAMELEDLSKLDIVKSVQFEENTIRQTETSQSS
NSTDVVKTFKRSQGRVTTTGISCRGICSVSMSYNVTINGVSSKYLNEKDS
RFRSLLTDTQRTKYDNAKKRYKGGLGVTFLRAVGINLGGRYSKGKVNELR
ERVENYESLAKEARNIMNSFERATVRVYGSMTVTSYTSVQSEAVAYVRSA
KVTLTDGRELRVVGASRRDVRVVDSNTGEELDNEDWIGGADQETDNGDIF
*
back to top

mRNA from alignment at tig00000888_pilon:272634..273386+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra10693.t1 ID=Ggra10693.t1|Name=Ggra10693.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=753bp|location=Sequence derived from alignment at tig00000888_pilon:272634..273386+ (Gracilaria gracilis GNS1m male)
ATGAACACTCTTCGCTACCTAATTGGTTTCCTCTGCATCGCCACTTTGGT
GAATGCCATGGAATTAGAAGATCTTTCGAAACTGGACATTGTCAAGAGTG
TGCAGTTCGAGGAGAATACAATTCGACAAACAGAGACATCGCAGAGTTCA
AACAGTACGGATGTTGTCAAGACCTTTAAGAGATCGCAAGGTCGCGTAAC
AACCACGGGGATTAGTTGCCGAGGAATTTGTTCCGTATCGATGTCATACA
ATGTGACTATTAACGGCGTGTCTTCCAAATATCTCAACGAGAAGGATAGC
AGGTTCCGCAGTCTTCTTACCGACACACAGAGGACTAAATACGACAATGC
GAAGAAGCGCTACAAAGGCGGGTTGGGCGTGACTTTCTTGCGCGCGGTTG
GCATCAATCTCGGCGGCCGATATTCCAAGGGTAAGGTGAATGAGCTCCGG
GAGCGCGTGGAGAACTACGAATCACTTGCGAAAGAGGCTCGTAACATCAT
GAACAGTTTTGAACGCGCGACAGTTCGCGTGTACGGCTCCATGACAGTTA
CGAGTTACACATCGGTGCAATCTGAGGCTGTTGCGTACGTGAGGTCCGCA
AAGGTTACGTTGACGGACGGCAGAGAGCTGCGCGTTGTCGGCGCCTCCCG
CCGCGATGTGAGGGTGGTTGACAGTAATACGGGCGAAGAGTTGGATAACG
AGGATTGGATTGGAGGCGCTGACCAGGAGACTGACAACGGTGATATCTTC
TAA
back to top

Coding sequence (CDS) from alignment at tig00000888_pilon:272634..273386+

>Ggra10693.t1 ID=Ggra10693.t1|Name=Ggra10693.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=753bp|location=Sequence derived from alignment at tig00000888_pilon:272634..273386+ (Gracilaria gracilis GNS1m male)
ATGAACACTCTTCGCTACCTAATTGGTTTCCTCTGCATCGCCACTTTGGT
GAATGCCATGGAATTAGAAGATCTTTCGAAACTGGACATTGTCAAGAGTG
TGCAGTTCGAGGAGAATACAATTCGACAAACAGAGACATCGCAGAGTTCA
AACAGTACGGATGTTGTCAAGACCTTTAAGAGATCGCAAGGTCGCGTAAC
AACCACGGGGATTAGTTGCCGAGGAATTTGTTCCGTATCGATGTCATACA
ATGTGACTATTAACGGCGTGTCTTCCAAATATCTCAACGAGAAGGATAGC
AGGTTCCGCAGTCTTCTTACCGACACACAGAGGACTAAATACGACAATGC
GAAGAAGCGCTACAAAGGCGGGTTGGGCGTGACTTTCTTGCGCGCGGTTG
GCATCAATCTCGGCGGCCGATATTCCAAGGGTAAGGTGAATGAGCTCCGG
GAGCGCGTGGAGAACTACGAATCACTTGCGAAAGAGGCTCGTAACATCAT
GAACAGTTTTGAACGCGCGACAGTTCGCGTGTACGGCTCCATGACAGTTA
CGAGTTACACATCGGTGCAATCTGAGGCTGTTGCGTACGTGAGGTCCGCA
AAGGTTACGTTGACGGACGGCAGAGAGCTGCGCGTTGTCGGCGCCTCCCG
CCGCGATGTGAGGGTGGTTGACAGTAATACGGGCGAAGAGTTGGATAACG
AGGATTGGATTGGAGGCGCTGACCAGGAGACTGACAACGGTGATATCTTC
TAA
back to top