Ggra10692.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra10692.t1
Unique Name	Ggra10692.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	684

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000888_pilon	contig	tig00000888_pilon:264989..267040 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra10692	Ggra10692	Gracilaria gracilis GNS1m male	gene	tig00000888_pilon 264989..267040 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra10692.t1.stop1	Ggra10692.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000888_pilon 264989..264991 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra10692.t1.CDS1	Ggra10692.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000888_pilon 264989..267040 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra10692.t1.exon1	Ggra10692.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000888_pilon 264989..267040 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra10692.t1.start1	Ggra10692.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000888_pilon 267038..267040 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra10692.t1	Ggra10692.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000888_pilon 264989..267040 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000888_pilon:264989..267040-
coding sequence from alignment at tig00000888_pilon:264989..267040-

mRNA sequence

>Ggra10692.t1 ID=Ggra10692.t1|Name=Ggra10692.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=684bp
MTSVAHSLAARRQTATHTIASAPQSSPAHVASPAIAMHAFRRLIAGRRNA
ALPPPQSAPPDAALPTPQSAPTVADLLHPSQFAPPDTAPVPLDAFYQQLA
KCVTDEDFRSLPGSRVPIPRPFGIRVGQVIDAGDYIWVGTFGDQRRHNIP
PDYSSGAGLFGFVLERTYTGSYVPYMYRAGGDDGSLPLRTKVTSTRDRGV
ISNGYFADAVRTLYNAKFKVAGLSSTCIEPLLAEMFGPEPKRELQLECLS
TWYMTVKDLDSFGAVGQVHKNGGTYFRVQTPILSTADHGWPHYSNSIPEH
DTYIASDSSGRLTLKEGPENLEKCGWNWNSAMACSKSSHPPPPYHIHVVL
YPNDAYQLLQHIRDDQYAQDTVRYQVDPTVFISLQTPVLHDEIESAINAR
GGTIYFKGSHFYGGGLSLLPQRVQLQARASDVTRTGHSTHDNKATATLNR
FIITEYDGGIRGTTFNFRCLKTTVTEQEQNRFRAVDGVKNRSVVKIDVLQ
RCRILALLVIVTVALGGYATSRTLQSDDNTHTVISDVIALSTLTFLTYNE
LRGGGGRLTFTDSLRGHVDTRKTWAKKKLPQVETVVKMGKNRNVLPFAGN
GLGSVSAEVNFTGSHEYSGGLAMRKAREANLYLCEGNFCVDMDTLRVADT
QRFGEEAHCFSWRDLEEGDVFRISTNSSCRFVV*

spliced messenger RNA

>Ggra10692.t1 ID=Ggra10692.t1|Name=Ggra10692.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2052bp|location=Sequence derived from alignment at tig00000888_pilon:264989..267040- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACATCAGTGGCACACTCGCTCGCCGCCCGTCGACAGACTGCAACACA
TACCATTGCCTCCGCCCCCCAGAGCTCTCCAGCGCATGTCGCATCGCCCG
CTATCGCCATGCACGCGTTCCGCCGCCTCATCGCCGGCCGCCGCAACGCC
GCCTTGCCGCCGCCCCAGTCCGCGCCGCCCGACGCCGCCTTGCCGACGCC
CCAGTCCGCGCCCACCGTCGCCGACCTTTTGCACCCGTCCCAGTTCGCGC
CGCCCGACACCGCCCCCGTCCCGCTGGACGCCTTCTACCAACAGCTGGCC
AAATGCGTCACCGACGAAGATTTCCGCAGCCTGCCCGGGTCTCGCGTGCC
CATCCCTCGCCCGTTTGGGATAAGAGTGGGCCAAGTCATCGACGCCGGCG
ACTACATCTGGGTCGGCACCTTTGGTGACCAGCGCCGTCATAACATCCCT
CCCGATTATTCGTCAGGAGCTGGGCTCTTCGGTTTCGTTTTGGAGCGAAC
TTACACCGGTTCGTACGTCCCTTACATGTATCGCGCCGGTGGGGATGATG
GTAGCCTGCCCTTGCGAACCAAGGTGACGAGCACGCGCGACAGAGGGGTG
ATCTCCAACGGGTATTTCGCGGACGCTGTGCGCACGTTGTACAACGCAAA
GTTCAAGGTCGCCGGTCTCTCCTCGACGTGCATTGAACCGCTTCTGGCTG
AAATGTTCGGGCCGGAGCCGAAGAGAGAGCTCCAGCTCGAGTGCCTTTCG
ACGTGGTACATGACCGTCAAGGATTTGGACAGCTTTGGTGCTGTGGGGCA
GGTGCACAAAAACGGAGGTACCTACTTCCGAGTTCAAACTCCAATTCTTT
CAACAGCAGATCATGGATGGCCGCACTATTCCAACAGCATACCCGAGCAC
GACACCTACATTGCTTCGGACAGCTCGGGTCGACTCACCTTGAAGGAAGG
CCCTGAGAACCTTGAAAAATGTGGATGGAACTGGAATTCCGCCATGGCGT
GTTCAAAAAGCAGCCACCCGCCTCCCCCGTACCACATACACGTTGTACTG
TATCCGAATGACGCTTACCAACTGCTGCAGCACATTCGAGACGATCAATA
CGCGCAAGATACAGTCAGATATCAGGTGGACCCAACAGTCTTCATTTCGT
TGCAAACGCCCGTCTTGCATGATGAGATAGAAAGCGCCATCAATGCCAGA
GGCGGAACCATCTACTTCAAGGGAAGCCATTTCTACGGCGGAGGTCTGTC
TTTGTTGCCACAGAGGGTGCAGCTGCAAGCCCGTGCGAGCGATGTGACCC
GTACCGGCCACTCCACGCACGACAACAAGGCGACGGCGACATTAAACCGC
TTCATCATCACAGAGTACGACGGTGGCATTCGCGGCACCACATTCAACTT
CAGGTGTCTCAAGACCACCGTCACAGAACAGGAACAGAACCGATTCCGTG
CTGTTGATGGTGTGAAGAATCGCAGCGTGGTGAAGATCGACGTGCTTCAG
AGATGCCGCATTCTGGCGCTGCTTGTGATCGTCACGGTGGCGCTGGGCGG
GTACGCGACGTCCAGAACGTTGCAATCCGACGATAATACGCACACTGTTA
TCAGCGACGTCATTGCTCTCTCGACACTGACATTCTTGACTTACAACGAA
TTGCGTGGAGGCGGAGGGAGATTGACCTTCACCGACTCTCTTCGTGGACA
TGTGGACACGAGGAAGACATGGGCGAAGAAGAAACTCCCACAGGTGGAGA
CCGTGGTCAAGATGGGGAAGAACCGCAATGTGTTGCCGTTTGCAGGCAAC
GGTCTTGGGTCGGTTTCTGCGGAAGTCAACTTCACTGGCTCGCATGAGTA
TAGCGGCGGATTGGCCATGCGGAAGGCAAGAGAGGCTAACTTGTATCTTT
GTGAAGGGAATTTCTGTGTAGATATGGATACGTTGAGAGTTGCTGATACG
CAAAGGTTCGGTGAAGAGGCACACTGCTTCAGTTGGCGTGATCTCGAGGA
AGGAGATGTTTTCCGAATTTCTACTAACTCGAGTTGTAGGTTTGTGGTGT
AA

protein sequence of Ggra10692.t1

>Ggra10692.t1 ID=Ggra10692.t1|Name=Ggra10692.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=684bp
MTSVAHSLAARRQTATHTIASAPQSSPAHVASPAIAMHAFRRLIAGRRNA
ALPPPQSAPPDAALPTPQSAPTVADLLHPSQFAPPDTAPVPLDAFYQQLA
KCVTDEDFRSLPGSRVPIPRPFGIRVGQVIDAGDYIWVGTFGDQRRHNIP
PDYSSGAGLFGFVLERTYTGSYVPYMYRAGGDDGSLPLRTKVTSTRDRGV
ISNGYFADAVRTLYNAKFKVAGLSSTCIEPLLAEMFGPEPKRELQLECLS
TWYMTVKDLDSFGAVGQVHKNGGTYFRVQTPILSTADHGWPHYSNSIPEH
DTYIASDSSGRLTLKEGPENLEKCGWNWNSAMACSKSSHPPPPYHIHVVL
YPNDAYQLLQHIRDDQYAQDTVRYQVDPTVFISLQTPVLHDEIESAINAR
GGTIYFKGSHFYGGGLSLLPQRVQLQARASDVTRTGHSTHDNKATATLNR
FIITEYDGGIRGTTFNFRCLKTTVTEQEQNRFRAVDGVKNRSVVKIDVLQ
RCRILALLVIVTVALGGYATSRTLQSDDNTHTVISDVIALSTLTFLTYNE
LRGGGGRLTFTDSLRGHVDTRKTWAKKKLPQVETVVKMGKNRNVLPFAGN
GLGSVSAEVNFTGSHEYSGGLAMRKAREANLYLCEGNFCVDMDTLRVADT
QRFGEEAHCFSWRDLEEGDVFRISTNSSCRFVV*

mRNA from alignment at tig00000888_pilon:264989..267040-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra10692.t1 ID=Ggra10692.t1|Name=Ggra10692.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2052bp|location=Sequence derived from alignment at tig00000888_pilon:264989..267040- (Gracilaria gracilis GNS1m male)
ATGACATCAGTGGCACACTCGCTCGCCGCCCGTCGACAGACTGCAACACA
TACCATTGCCTCCGCCCCCCAGAGCTCTCCAGCGCATGTCGCATCGCCCG
CTATCGCCATGCACGCGTTCCGCCGCCTCATCGCCGGCCGCCGCAACGCC
GCCTTGCCGCCGCCCCAGTCCGCGCCGCCCGACGCCGCCTTGCCGACGCC
CCAGTCCGCGCCCACCGTCGCCGACCTTTTGCACCCGTCCCAGTTCGCGC
CGCCCGACACCGCCCCCGTCCCGCTGGACGCCTTCTACCAACAGCTGGCC
AAATGCGTCACCGACGAAGATTTCCGCAGCCTGCCCGGGTCTCGCGTGCC
CATCCCTCGCCCGTTTGGGATAAGAGTGGGCCAAGTCATCGACGCCGGCG
ACTACATCTGGGTCGGCACCTTTGGTGACCAGCGCCGTCATAACATCCCT
CCCGATTATTCGTCAGGAGCTGGGCTCTTCGGTTTCGTTTTGGAGCGAAC
TTACACCGGTTCGTACGTCCCTTACATGTATCGCGCCGGTGGGGATGATG
GTAGCCTGCCCTTGCGAACCAAGGTGACGAGCACGCGCGACAGAGGGGTG
ATCTCCAACGGGTATTTCGCGGACGCTGTGCGCACGTTGTACAACGCAAA
GTTCAAGGTCGCCGGTCTCTCCTCGACGTGCATTGAACCGCTTCTGGCTG
AAATGTTCGGGCCGGAGCCGAAGAGAGAGCTCCAGCTCGAGTGCCTTTCG
ACGTGGTACATGACCGTCAAGGATTTGGACAGCTTTGGTGCTGTGGGGCA
GGTGCACAAAAACGGAGGTACCTACTTCCGAGTTCAAACTCCAATTCTTT
CAACAGCAGATCATGGATGGCCGCACTATTCCAACAGCATACCCGAGCAC
GACACCTACATTGCTTCGGACAGCTCGGGTCGACTCACCTTGAAGGAAGG
CCCTGAGAACCTTGAAAAATGTGGATGGAACTGGAATTCCGCCATGGCGT
GTTCAAAAAGCAGCCACCCGCCTCCCCCGTACCACATACACGTTGTACTG
TATCCGAATGACGCTTACCAACTGCTGCAGCACATTCGAGACGATCAATA
CGCGCAAGATACAGTCAGATATCAGGTGGACCCAACAGTCTTCATTTCGT
TGCAAACGCCCGTCTTGCATGATGAGATAGAAAGCGCCATCAATGCCAGA
GGCGGAACCATCTACTTCAAGGGAAGCCATTTCTACGGCGGAGGTCTGTC
TTTGTTGCCACAGAGGGTGCAGCTGCAAGCCCGTGCGAGCGATGTGACCC
GTACCGGCCACTCCACGCACGACAACAAGGCGACGGCGACATTAAACCGC
TTCATCATCACAGAGTACGACGGTGGCATTCGCGGCACCACATTCAACTT
CAGGTGTCTCAAGACCACCGTCACAGAACAGGAACAGAACCGATTCCGTG
CTGTTGATGGTGTGAAGAATCGCAGCGTGGTGAAGATCGACGTGCTTCAG
AGATGCCGCATTCTGGCGCTGCTTGTGATCGTCACGGTGGCGCTGGGCGG
GTACGCGACGTCCAGAACGTTGCAATCCGACGATAATACGCACACTGTTA
TCAGCGACGTCATTGCTCTCTCGACACTGACATTCTTGACTTACAACGAA
TTGCGTGGAGGCGGAGGGAGATTGACCTTCACCGACTCTCTTCGTGGACA
TGTGGACACGAGGAAGACATGGGCGAAGAAGAAACTCCCACAGGTGGAGA
CCGTGGTCAAGATGGGGAAGAACCGCAATGTGTTGCCGTTTGCAGGCAAC
GGTCTTGGGTCGGTTTCTGCGGAAGTCAACTTCACTGGCTCGCATGAGTA
TAGCGGCGGATTGGCCATGCGGAAGGCAAGAGAGGCTAACTTGTATCTTT
GTGAAGGGAATTTCTGTGTAGATATGGATACGTTGAGAGTTGCTGATACG
CAAAGGTTCGGTGAAGAGGCACACTGCTTCAGTTGGCGTGATCTCGAGGA
AGGAGATGTTTTCCGAATTTCTACTAACTCGAGTTGTAGGTTTGTGGTGT
AA

Coding sequence (CDS) from alignment at tig00000888_pilon:264989..267040-

>Ggra10692.t1 ID=Ggra10692.t1|Name=Ggra10692.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=2052bp|location=Sequence derived from alignment at tig00000888_pilon:264989..267040- (Gracilaria gracilis GNS1m male)
ATGACATCAGTGGCACACTCGCTCGCCGCCCGTCGACAGACTGCAACACA
TACCATTGCCTCCGCCCCCCAGAGCTCTCCAGCGCATGTCGCATCGCCCG
CTATCGCCATGCACGCGTTCCGCCGCCTCATCGCCGGCCGCCGCAACGCC
GCCTTGCCGCCGCCCCAGTCCGCGCCGCCCGACGCCGCCTTGCCGACGCC
CCAGTCCGCGCCCACCGTCGCCGACCTTTTGCACCCGTCCCAGTTCGCGC
CGCCCGACACCGCCCCCGTCCCGCTGGACGCCTTCTACCAACAGCTGGCC
AAATGCGTCACCGACGAAGATTTCCGCAGCCTGCCCGGGTCTCGCGTGCC
CATCCCTCGCCCGTTTGGGATAAGAGTGGGCCAAGTCATCGACGCCGGCG
ACTACATCTGGGTCGGCACCTTTGGTGACCAGCGCCGTCATAACATCCCT
CCCGATTATTCGTCAGGAGCTGGGCTCTTCGGTTTCGTTTTGGAGCGAAC
TTACACCGGTTCGTACGTCCCTTACATGTATCGCGCCGGTGGGGATGATG
GTAGCCTGCCCTTGCGAACCAAGGTGACGAGCACGCGCGACAGAGGGGTG
ATCTCCAACGGGTATTTCGCGGACGCTGTGCGCACGTTGTACAACGCAAA
GTTCAAGGTCGCCGGTCTCTCCTCGACGTGCATTGAACCGCTTCTGGCTG
AAATGTTCGGGCCGGAGCCGAAGAGAGAGCTCCAGCTCGAGTGCCTTTCG
ACGTGGTACATGACCGTCAAGGATTTGGACAGCTTTGGTGCTGTGGGGCA
GGTGCACAAAAACGGAGGTACCTACTTCCGAGTTCAAACTCCAATTCTTT
CAACAGCAGATCATGGATGGCCGCACTATTCCAACAGCATACCCGAGCAC
GACACCTACATTGCTTCGGACAGCTCGGGTCGACTCACCTTGAAGGAAGG
CCCTGAGAACCTTGAAAAATGTGGATGGAACTGGAATTCCGCCATGGCGT
GTTCAAAAAGCAGCCACCCGCCTCCCCCGTACCACATACACGTTGTACTG
TATCCGAATGACGCTTACCAACTGCTGCAGCACATTCGAGACGATCAATA
CGCGCAAGATACAGTCAGATATCAGGTGGACCCAACAGTCTTCATTTCGT
TGCAAACGCCCGTCTTGCATGATGAGATAGAAAGCGCCATCAATGCCAGA
GGCGGAACCATCTACTTCAAGGGAAGCCATTTCTACGGCGGAGGTCTGTC
TTTGTTGCCACAGAGGGTGCAGCTGCAAGCCCGTGCGAGCGATGTGACCC
GTACCGGCCACTCCACGCACGACAACAAGGCGACGGCGACATTAAACCGC
TTCATCATCACAGAGTACGACGGTGGCATTCGCGGCACCACATTCAACTT
CAGGTGTCTCAAGACCACCGTCACAGAACAGGAACAGAACCGATTCCGTG
CTGTTGATGGTGTGAAGAATCGCAGCGTGGTGAAGATCGACGTGCTTCAG
AGATGCCGCATTCTGGCGCTGCTTGTGATCGTCACGGTGGCGCTGGGCGG
GTACGCGACGTCCAGAACGTTGCAATCCGACGATAATACGCACACTGTTA
TCAGCGACGTCATTGCTCTCTCGACACTGACATTCTTGACTTACAACGAA
TTGCGTGGAGGCGGAGGGAGATTGACCTTCACCGACTCTCTTCGTGGACA
TGTGGACACGAGGAAGACATGGGCGAAGAAGAAACTCCCACAGGTGGAGA
CCGTGGTCAAGATGGGGAAGAACCGCAATGTGTTGCCGTTTGCAGGCAAC
GGTCTTGGGTCGGTTTCTGCGGAAGTCAACTTCACTGGCTCGCATGAGTA
TAGCGGCGGATTGGCCATGCGGAAGGCAAGAGAGGCTAACTTGTATCTTT
GTGAAGGGAATTTCTGTGTAGATATGGATACGTTGAGAGTTGCTGATACG
CAAAGGTTCGGTGAAGAGGCACACTGCTTCAGTTGGCGTGATCTCGAGGA
AGGAGATGTTTTCCGAATTTCTACTAACTCGAGTTGTAGGTTTGTGGTGT
AA