Ggra10690.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra10690.t1
Unique NameGgra10690.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length271
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000888_piloncontigtig00000888_pilon:215256..217520 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra10690Ggra10690Gracilaria gracilis GNS1m malegenetig00000888_pilon 215256..217520 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10690.t1Ggra10690.t1Gracilaria gracilis GNS1m malepolypeptidetig00000888_pilon 215256..217520 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10690.t1.start1Ggra10690.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000888_pilon 215256..215258 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10690.t1.CDS1Ggra10690.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000888_pilon 215256..215693 +
Ggra10690.t1.CDS2Ggra10690.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000888_pilon 217146..217520 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10690.t1.exon1Ggra10690.t1.exon1Gracilaria gracilis GNS1m maleexontig00000888_pilon 215256..215693 +
Ggra10690.t1.exon2Ggra10690.t1.exon2Gracilaria gracilis GNS1m maleexontig00000888_pilon 217146..217520 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10690.t1.intron1Ggra10690.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000888_pilon 215694..217145 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10690.t1.stop1Ggra10690.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000888_pilon 217518..217520 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra10690.t1 ID=Ggra10690.t1|Name=Ggra10690.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=271bp
MDCTLENGMDSCDSRQREEPEAFGTENRKKLGDGLNNWEYSSPFSAIDLD
LDSINQELEKRFVVETNTVLENVLGEVREKRSRGVVTASDLTRLDTLETF
LPEHTLGKIVTNISRSLTARRQKLTDAMELKEVIIQHVLAASYGVSSGYR
AIGDADERDRFHCVYEQPTQPQAFARHDAVDDVLLSRLKITQTSAGIREV
TLMQSGDPGWFLARAFLFTSRTTNGFIDVLAKNFEANAKALANIIKEKET
CYAGTFFPNSKEETTDRLRA*
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spliced messenger RNA

>Ggra10690.t1 ID=Ggra10690.t1|Name=Ggra10690.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=813bp|location=Sequence derived from alignment at tig00000888_pilon:215256..217520+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGACTGTACTCTTGAGAACGGTATGGATTCGTGCGATAGTCGGCAGAG
AGAGGAACCAGAGGCATTTGGAACAGAGAATAGAAAAAAATTGGGAGATG
GTCTTAACAATTGGGAGTACAGCTCACCATTTTCAGCAATTGATCTAGAC
CTGGATTCCATCAATCAGGAACTGGAAAAAAGGTTTGTAGTAGAAACGAA
CACAGTACTGGAAAATGTATTGGGAGAAGTACGAGAGAAACGTTCTCGTG
GTGTTGTAACTGCATCAGATCTAACGCGTCTTGATACTTTGGAGACGTTT
CTCCCTGAGCATACTCTGGGAAAGATTGTTACTAACATCAGTCGTTCCCT
TACAGCAAGAAGACAAAAACTGACCGACGCTATGGAGTTGAAAGAAGTTA
TAATTCAGCACGTACTGGCTGCCTCCTACGGAGTCTCAtctgggtacaga
gcaATTGGAGATGCGGACGAGCGGGATCGGTTCCACTGTGTCTACGAGCA
ACCGACACAGCCGCAGGCTTTTGCAAGGCATGATGCCGTAGATGATGTGC
TGCTGTCTCGCTTGAAAATTACTCAGACCTCGGCAGGAATTCGTGAAGTA
ACCCTTATGCAATCTGGAGACCCTGGATGGTTTCTGGCTCGCGCATTTTT
GTTTACCTCTCGAACTACTAACGGATTCATAGACGTCTTAGCAAAAAACT
TTGAAGCTAATGCTAAGGCACTTGCCAATATTATCAAGGAGAAGGAGACC
TGTTATGCAGGCACATTTTTTCCGAACAGCAAAGAGGAAACTACTGATCG
TTTGCGAGCTTGA
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protein sequence of Ggra10690.t1

>Ggra10690.t1 ID=Ggra10690.t1|Name=Ggra10690.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=271bp
MDCTLENGMDSCDSRQREEPEAFGTENRKKLGDGLNNWEYSSPFSAIDLD
LDSINQELEKRFVVETNTVLENVLGEVREKRSRGVVTASDLTRLDTLETF
LPEHTLGKIVTNISRSLTARRQKLTDAMELKEVIIQHVLAASYGVSSGYR
AIGDADERDRFHCVYEQPTQPQAFARHDAVDDVLLSRLKITQTSAGIREV
TLMQSGDPGWFLARAFLFTSRTTNGFIDVLAKNFEANAKALANIIKEKET
CYAGTFFPNSKEETTDRLRA*
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mRNA from alignment at tig00000888_pilon:215256..217520+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra10690.t1 ID=Ggra10690.t1|Name=Ggra10690.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2265bp|location=Sequence derived from alignment at tig00000888_pilon:215256..217520+ (Gracilaria gracilis GNS1m male)
ATGGACTGTACTCTTGAGAACGGTATGGATTCGTGCGATAGTCGGCAGAG AGAGGAACCAGAGGCATTTGGAACAGAGAATAGAAAAAAATTGGGAGATG GTCTTAACAATTGGGAGTACAGCTCACCATTTTCAGCAATTGATCTAGAC CTGGATTCCATCAATCAGGAACTGGAAAAAAGGTTTGTAGTAGAAACGAA CACAGTACTGGAAAATGTATTGGGAGAAGTACGAGAGAAACGTTCTCGTG GTGTTGTAACTGCATCAGATCTAACGCGTCTTGATACTTTGGAGACGTTT CTCCCTGAGCATACTCTGGGAAAGATTGTTACTAACATCAGTCGTTCCCT TACAGCAAGAAGACAAAAACTGACCGACGCTATGGAGTTGAAAGAAGTTA TAATTCAGCACGTACTGGCTGCCTCCTACGGAGTCTCAGTCAGTACGATG ACATCGAAAAAGaatcaagggtttttctttcaagtgaaatcatctgaaaa acattactgcgaggtgtggtctgcgctctgctgcacttcggaacgaaggc aacgcgttgaacgtaatgggacagggtggtcgaatcggccactaagggcg agttcattgataaaggagttagaggacgaactcgcttcgattaatcgctt gttcttattcgccccaagagcaaccgtctttagtcttgatgatgataacc aacggctaagatctcgcgcagtggcacatttcacatttttgactcacatt aaaaatcctaagaaagcattgggtcctctgaaccatgccatctgctctgc tctgaatgcattgttcttcgccaatcactattctaggtctggagataagg cccttgatgtatgggaaaggcttgttcgccttctacaaggcgtttctcca gctgggcctgtccagccaatgtcagatgccatatttgcagcggatcgtcg atacaaccacaaAGAGAGTatcagcgcttcgagaagcagaattctcgtag aaaattgtcgcaaaaatcttttgagaacagtttcgattgtgaaaaaagac ttcctttttgaaatggttttttaggatgctaaacaaaaactcatttgagc tctcgttttatttactttaatttgctaatgtgctttgcatatgaaaaatt caaaacagtctttagagataggcgttatttcacagtaccaaacatttggg gcgaagatgataaaatctttgtagagggttaatatgaagaaaaggaaatt ttggagtcaaactggttacaaagccaaatctgggaaactctggatgtttt tttccttgcgttctcatttgttggttctaaaatgatccaaatggggtgtc tgtccagaaagacaagaaaatacgccgtgtgacacggcgcatttgtagat caaaatatccagctcagtggcattactcttgaaacagctgtaagcattct atatataagcgctagatgttgccgccccgccaatttcgaaagagttcacc aaaaacatgcagacctctaatttttaagcagattttgattgagaattgtg cactctagatcaaaacacctagctttgcttccgtagtaggagctttgcga tCAAATATCTCAACGACAGACGAGGGGCTAGAGCACtcgggacgcacaaa cgttcattagattatccgtttgttttcggtgatggttcggtacggaaaaa gtacaaaggaataccgaaaagcgagacaggatgcagagccgtttattcag cacgccgtaaaccgaagagcacgaatgggcgcccgattaaagcagtagtg taccgtgaaagttataacggtcgcatagcctcagtgtaccataataatga ccgcctttttcagacttcaaagtttactttgattccaaagtctgggtaca gagcaATTGGAGATGCGGACGAGCGGGATCGGTTCCACTGTGTCTACGAG CAACCGACACAGCCGCAGGCTTTTGCAAGGCATGATGCCGTAGATGATGT GCTGCTGTCTCGCTTGAAAATTACTCAGACCTCGGCAGGAATTCGTGAAG TAACCCTTATGCAATCTGGAGACCCTGGATGGTTTCTGGCTCGCGCATTT TTGTTTACCTCTCGAACTACTAACGGATTCATAGACGTCTTAGCAAAAAA CTTTGAAGCTAATGCTAAGGCACTTGCCAATATTATCAAGGAGAAGGAGA CCTGTTATGCAGGCACATTTTTTCCGAACAGCAAAGAGGAAACTACTGAT CGTTTGCGAGCTTGA
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Coding sequence (CDS) from alignment at tig00000888_pilon:215256..217520+

>Ggra10690.t1 ID=Ggra10690.t1|Name=Ggra10690.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=813bp|location=Sequence derived from alignment at tig00000888_pilon:215256..217520+ (Gracilaria gracilis GNS1m male)
ATGGACTGTACTCTTGAGAACGGTATGGATTCGTGCGATAGTCGGCAGAG
AGAGGAACCAGAGGCATTTGGAACAGAGAATAGAAAAAAATTGGGAGATG
GTCTTAACAATTGGGAGTACAGCTCACCATTTTCAGCAATTGATCTAGAC
CTGGATTCCATCAATCAGGAACTGGAAAAAAGGTTTGTAGTAGAAACGAA
CACAGTACTGGAAAATGTATTGGGAGAAGTACGAGAGAAACGTTCTCGTG
GTGTTGTAACTGCATCAGATCTAACGCGTCTTGATACTTTGGAGACGTTT
CTCCCTGAGCATACTCTGGGAAAGATTGTTACTAACATCAGTCGTTCCCT
TACAGCAAGAAGACAAAAACTGACCGACGCTATGGAGTTGAAAGAAGTTA
TAATTCAGCACGTACTGGCTGCCTCCTACGGAGTCTCAtctgggtacaga
gcaATTGGAGATGCGGACGAGCGGGATCGGTTCCACTGTGTCTACGAGCA
ACCGACACAGCCGCAGGCTTTTGCAAGGCATGATGCCGTAGATGATGTGC
TGCTGTCTCGCTTGAAAATTACTCAGACCTCGGCAGGAATTCGTGAAGTA
ACCCTTATGCAATCTGGAGACCCTGGATGGTTTCTGGCTCGCGCATTTTT
GTTTACCTCTCGAACTACTAACGGATTCATAGACGTCTTAGCAAAAAACT
TTGAAGCTAATGCTAAGGCACTTGCCAATATTATCAAGGAGAAGGAGACC
TGTTATGCAGGCACATTTTTTCCGAACAGCAAAGAGGAAACTACTGATCG
TTTGCGAGCTTGA
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