Ggra10687.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra10687.t1
Unique NameGgra10687.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length336
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000888_piloncontigtig00000888_pilon:165490..166788 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog392500.Swoo_4891
PFAMsLactonase
Max annot lvl1224|Proteobacteria
Evalue6.3e-17
EggNOG OGsCOG2706@1|root,COG2706@2|Bacteria,1NG69@1224|Proteobacteria
DescriptionLactonase, 7-bladed beta-propeller
COG categoryG
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra10687Ggra10687Gracilaria gracilis GNS1m malegenetig00000888_pilon 165490..166788 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10687.t1Ggra10687.t1Gracilaria gracilis GNS1m malepolypeptidetig00000888_pilon 165490..166788 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10687.t1.stop1Ggra10687.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000888_pilon 165490..165492 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10687.t1.CDS1Ggra10687.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000888_pilon 165490..166210 -
Ggra10687.t1.CDS2Ggra10687.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000888_pilon 166502..166788 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10687.t1.exon1Ggra10687.t1.exon1Gracilaria gracilis GNS1m maleexontig00000888_pilon 165490..166210 -
Ggra10687.t1.exon2Ggra10687.t1.exon2Gracilaria gracilis GNS1m maleexontig00000888_pilon 166502..166788 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10687.t1.intron1Ggra10687.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000888_pilon 166211..166501 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10687.t1.start1Ggra10687.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000888_pilon 166786..166788 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra10687.t1 ID=Ggra10687.t1|Name=Ggra10687.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=336bp
MTMARFPLFIAALLSACLLCSASPPAATLDLAGLIKPRRPSSEFVGGVYA
MSNNITENTMVVYARRPDGTLKLLDPALRTGGKGAVLAPGASFDPLRRDL
TFRPSGIQFSPDRQSLVVSDLFTSVNAIDTGRVEEIVVFSVNGIGLLSSS
PVSSAGSTELGNAEGRNLPSAIGFQIVKSRGVQYVVVPEVRSFAGADGGE
PLDQASSVSTWALDAESQLTPVQLDVPVGSSVTSGQMDSCWIMFSDDLSN
FWIANTPSNSISVFSFDNGISTLEEEVGATGMSPTDLWLSSDSKFLYQLF
GGSVGVFEIGEGGSLTLIQNPMNVPEMNPQGIVAF*
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spliced messenger RNA

>Ggra10687.t1 ID=Ggra10687.t1|Name=Ggra10687.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1008bp|location=Sequence derived from alignment at tig00000888_pilon:165490..166788- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACCATGGCTCGTTTCCCGTTGTTCATCGCCGCTTTGTTATCCGCATG
CCTGCTTTGCAGTGCATCCCCGCCAGCCGCCACCCTCGATTTGGCCGGCT
TAATCAAACCACGAAGACCCTCCTCCGAATTCGTGGGTGGTGTTTATGCC
ATGTCCAACAACATTACTGAGAACACAATGGTCGTCTACGCGCGCCGACC
TGACGGTACCCTGAAGTTGCTGGATCCAGCCCTTAGGACGGGAGGAAAGG
GCGCCGTTCTCGCTCCTGGAGCATCTTTCGACCCACTTCGCCGAGATCTC
ACTTTCCGCCCATCAGGAATTCAATTCTCTCCTGATCGTCAATCTTTGGT
TGTCTCAGACTTGTTTACTAGCGTCAATGCGATCGACACCGGCAGAGTTG
AAGAAATTGTGGTCTTCAGCGTCAATGGAATTGGTCTTCTCAGCAGCTCT
CCTGTGTCGAGCGCAGGATCAACGGAATTAGGCAACGCAGAAGGTCGTAA
TCTTCCTTCTGCAATTGGATTCCAAATTGTGAAGTCGCGGGGCGTGCAGT
ACGTAGTTGTACCTGAAGTACGTAGTTTTGCTGGTGCCGACGGCGGGGAA
CCCCTTGACCAAGCTTCTTCCGTCTCTACGTGGGCGCTTGATGCCGAGAG
TCAGCTTACACCCGTGCAACTTGACGTGCCCGTCGGATCATCGGTTACCT
CAGGCCAAATGGACTCTTGCTGGATTATGTTCTCCGATGACTTGAGTAAC
TTCTGGATTGCTAATACGCCGTCAAACTCGATCTCGGTGTTCTCATTCGA
TAATGGAATTTCCACTCTTGAAGAAGAAGTTGGGGCAACTGGAATGTCTC
CCACTGACCTATGGCTATCAAGTGATAGCAAATTCTTGTACCAACTGTTT
GGTGGATCTGTTGGTGTTTTTGAAATCGGAGAAGGTGGAAGTCTCACTCT
CATCCAAAATCCGATGAATGTTCCAGAAATGAATCCTCAGGGAATCGTTG
CCTTTTAA
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protein sequence of Ggra10687.t1

>Ggra10687.t1 ID=Ggra10687.t1|Name=Ggra10687.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=336bp
MTMARFPLFIAALLSACLLCSASPPAATLDLAGLIKPRRPSSEFVGGVYA
MSNNITENTMVVYARRPDGTLKLLDPALRTGGKGAVLAPGASFDPLRRDL
TFRPSGIQFSPDRQSLVVSDLFTSVNAIDTGRVEEIVVFSVNGIGLLSSS
PVSSAGSTELGNAEGRNLPSAIGFQIVKSRGVQYVVVPEVRSFAGADGGE
PLDQASSVSTWALDAESQLTPVQLDVPVGSSVTSGQMDSCWIMFSDDLSN
FWIANTPSNSISVFSFDNGISTLEEEVGATGMSPTDLWLSSDSKFLYQLF
GGSVGVFEIGEGGSLTLIQNPMNVPEMNPQGIVAF*
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mRNA from alignment at tig00000888_pilon:165490..166788-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra10687.t1 ID=Ggra10687.t1|Name=Ggra10687.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1299bp|location=Sequence derived from alignment at tig00000888_pilon:165490..166788- (Gracilaria gracilis GNS1m male)
ATGACCATGGCTCGTTTCCCGTTGTTCATCGCCGCTTTGTTATCCGCATG
CCTGCTTTGCAGTGCATCCCCGCCAGCCGCCACCCTCGATTTGGCCGGCT
TAATCAAACCACGAAGACCCTCCTCCGAATTCGTGGGTGGTGTTTATGCC
ATGTCCAACAACATTACTGAGAACACAATGGTCGTCTACGCGCGCCGACC
TGACGGTACCCTGAAGTTGCTGGATCCAGCCCTTAGGACGGGAGGAAAGG
GCGCCGTTCTCGCTCCTGGAGCATCTTTCGACCCACTGTTCTCATCCTTC
TCCGTCGTCATCACGTCTGACAACCGATTTGTTCTGGCTGTCAATGCGGG
AAGTAGTTCTGTTTCTGTTTTCAGAGTTCTTCGCGACTTTTCTCTTCGTC
TCGTCAATGTACAACCTGTTCCCGGATTTGGGCCAAACACCATTGCAGTC
TCTGGAAACATTGTCTACGTTGCCAGCACGGACGCAGACGGTGAATTTGA
AGGCGTTTCTTCCCAGAAAGGTGTCCTTTCTGGATTTATCCTAGCCTCTT
CTGGAAGGCTGATTCCCCTTCCACGCAGTCGCCGAGATCTCACTTTCCGC
CCATCAGGAATTCAATTCTCTCCTGATCGTCAATCTTTGGTTGTCTCAGA
CTTGTTTACTAGCGTCAATGCGATCGACACCGGCAGAGTTGAAGAAATTG
TGGTCTTCAGCGTCAATGGAATTGGTCTTCTCAGCAGCTCTCCTGTGTCG
AGCGCAGGATCAACGGAATTAGGCAACGCAGAAGGTCGTAATCTTCCTTC
TGCAATTGGATTCCAAATTGTGAAGTCGCGGGGCGTGCAGTACGTAGTTG
TACCTGAAGTACGTAGTTTTGCTGGTGCCGACGGCGGGGAACCCCTTGAC
CAAGCTTCTTCCGTCTCTACGTGGGCGCTTGATGCCGAGAGTCAGCTTAC
ACCCGTGCAACTTGACGTGCCCGTCGGATCATCGGTTACCTCAGGCCAAA
TGGACTCTTGCTGGATTATGTTCTCCGATGACTTGAGTAACTTCTGGATT
GCTAATACGCCGTCAAACTCGATCTCGGTGTTCTCATTCGATAATGGAAT
TTCCACTCTTGAAGAAGAAGTTGGGGCAACTGGAATGTCTCCCACTGACC
TATGGCTATCAAGTGATAGCAAATTCTTGTACCAACTGTTTGGTGGATCT
GTTGGTGTTTTTGAAATCGGAGAAGGTGGAAGTCTCACTCTCATCCAAAA
TCCGATGAATGTTCCAGAAATGAATCCTCAGGGAATCGTTGCCTTTTAA
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Coding sequence (CDS) from alignment at tig00000888_pilon:165490..166788-

>Ggra10687.t1 ID=Ggra10687.t1|Name=Ggra10687.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1008bp|location=Sequence derived from alignment at tig00000888_pilon:165490..166788- (Gracilaria gracilis GNS1m male)
ATGACCATGGCTCGTTTCCCGTTGTTCATCGCCGCTTTGTTATCCGCATG
CCTGCTTTGCAGTGCATCCCCGCCAGCCGCCACCCTCGATTTGGCCGGCT
TAATCAAACCACGAAGACCCTCCTCCGAATTCGTGGGTGGTGTTTATGCC
ATGTCCAACAACATTACTGAGAACACAATGGTCGTCTACGCGCGCCGACC
TGACGGTACCCTGAAGTTGCTGGATCCAGCCCTTAGGACGGGAGGAAAGG
GCGCCGTTCTCGCTCCTGGAGCATCTTTCGACCCACTTCGCCGAGATCTC
ACTTTCCGCCCATCAGGAATTCAATTCTCTCCTGATCGTCAATCTTTGGT
TGTCTCAGACTTGTTTACTAGCGTCAATGCGATCGACACCGGCAGAGTTG
AAGAAATTGTGGTCTTCAGCGTCAATGGAATTGGTCTTCTCAGCAGCTCT
CCTGTGTCGAGCGCAGGATCAACGGAATTAGGCAACGCAGAAGGTCGTAA
TCTTCCTTCTGCAATTGGATTCCAAATTGTGAAGTCGCGGGGCGTGCAGT
ACGTAGTTGTACCTGAAGTACGTAGTTTTGCTGGTGCCGACGGCGGGGAA
CCCCTTGACCAAGCTTCTTCCGTCTCTACGTGGGCGCTTGATGCCGAGAG
TCAGCTTACACCCGTGCAACTTGACGTGCCCGTCGGATCATCGGTTACCT
CAGGCCAAATGGACTCTTGCTGGATTATGTTCTCCGATGACTTGAGTAAC
TTCTGGATTGCTAATACGCCGTCAAACTCGATCTCGGTGTTCTCATTCGA
TAATGGAATTTCCACTCTTGAAGAAGAAGTTGGGGCAACTGGAATGTCTC
CCACTGACCTATGGCTATCAAGTGATAGCAAATTCTTGTACCAACTGTTT
GGTGGATCTGTTGGTGTTTTTGAAATCGGAGAAGGTGGAAGTCTCACTCT
CATCCAAAATCCGATGAATGTTCCAGAAATGAATCCTCAGGGAATCGTTG
CCTTTTAA
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