Ggra10681.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra10681.t1
Unique NameGgra10681.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length341
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000888_piloncontigtig00000888_pilon:15505..16797 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog63577.G9NR22
PFAMsLactonase
Max annot lvl4751|Fungi
Evalue1.69e-09
EggNOG OGs2F2WW@1|root,2T3VN@2759|Eukaryota,38XNY@33154|Opisthokonta,3PX7F@4751|Fungi,3RG78@4890|Ascomycota,21DNE@147550|Sordariomycetes,3TJPH@5125|Hypocreales,3TZBE@5129|Hypocreaceae
DescriptionLactonase, 7-bladed beta-propeller
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra10681Ggra10681Gracilaria gracilis GNS1m malegenetig00000888_pilon 15505..16797 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10681.t1Ggra10681.t1Gracilaria gracilis GNS1m malepolypeptidetig00000888_pilon 15505..16797 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10681.t1.stop1Ggra10681.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000888_pilon 15505..15507 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10681.t1.CDS1Ggra10681.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000888_pilon 15505..16246 -
Ggra10681.t1.CDS2Ggra10681.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000888_pilon 16517..16797 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10681.t1.exon1Ggra10681.t1.exon1Gracilaria gracilis GNS1m maleexontig00000888_pilon 15505..16246 -
Ggra10681.t1.exon2Ggra10681.t1.exon2Gracilaria gracilis GNS1m maleexontig00000888_pilon 16517..16797 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10681.t1.intron1Ggra10681.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000888_pilon 16247..16516 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10681.t1.start1Ggra10681.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000888_pilon 16795..16797 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra10681.t1 ID=Ggra10681.t1|Name=Ggra10681.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=341bp
MAMARIPLFITVLLTTFVLSCASLPRFPRDVGSFIKPRRSPFVGGVYAMS
NNVTENTMVVYARRPDGTLQLLDGALKTGGRGAVLAPDAVFDPLLIPIPR
SQRRLSFRPSGITFSPDRRTLVVTNLFAGLNAIAAGGVREIFTYSVSATG
LLSVVPVANAASTELGNSEGRNLPGAIGLEVVEERGVQYVVVPEVRSLAG
ADGMAPADQAASVSTWALDSESMLSPVQLDVPVGPSVSSGQMDSCWIMFS
NDLSNFWVASTPTNATSVFSFEGGISTLEEEVAASVTFPVDLWLSSDSKF
FYQLQAGSVSAFEIGDGGSLTLIQNPMNIPDENAQGIVAF*
back to top

spliced messenger RNA

>Ggra10681.t1 ID=Ggra10681.t1|Name=Ggra10681.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1023bp|location=Sequence derived from alignment at tig00000888_pilon:15505..16797- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTATGGCTCGTATCCCGCTGTTCATCACTGTGTTGCTCACCACTTT
CGTGCTTTCATGCGCATCCCTGCCACGCTTTCCCCGCGATGTAGGCAGTT
TCATCAAACCACGCAGATCTCCCTTCGTGGGCGGAGTATACGCCATGTCC
AACAATGTCACCGAGAACACAATGGTGGTGTACGCCCGCCGACCTGACGG
CACCCTTCAGCTGCTGGATGGCGCGCTCAAGACGGGGGGAAGAGGCGCCG
TTCTCGCACCCGACGCCGTGTTCGACCCGCTACTTATCCCGATACCACGC
AGCCAGCGACGGCTCTCCTTCCGTCCGTCGGGCATCACGTTTTCGCCCGA
CCGTCGCACTCTGGTTGTCACCAACCTGTTCGCCGGCCTCAATGCCATCG
CAGCCGGCGGCGTGCGGGAAATCTTCACGTACAGCGTCAGTGCAACTGGG
TTGCTCAGCGTGGTTCCAGTGGCAAACGCCGCGTCGACGGAGCTGGGCAA
TTCCGAAGGTCGGAACCTGCCGGGCGCGATTGGCTTGGAAGTGGTGGAGG
AAAGAGGCGTGCAGTACGTGGTGGTGCCTGAAGTACGCAGTCTCGCCGGG
GCCGATGGCATGGCTCCCGCAGACCAAGCCGCTTCCGTCTCGACGTGGGC
GCTCGACTCAGAGAGCATGCTGTCCCCGGTGCAACTCGATGTGCCGGTCG
GGCCTTCCGTGAGCTCCGGTCAAATGGACTCGTGCTGGATCATGTTCTCC
AACGACTTGAGCAACTTTTGGGTGGCTAGCACGCCTACAAACGCGACTTC
TGTGTTCTCATTCGAAGGCGGGATTTCTACTCTTGAGGAAGAGGTTGCGG
CGAGTGTAACGTTCCCTGTTGACCTGTGGCTGTCCAGTGATAGCAAGTTT
TTTTACCAATTGCAGGCTGGATCGGTGTCAGCGTTCGAAATCGGAGACGG
CGGAAGTCTCACTCTGATCCAAAACCCTATGAACATTCCAGACGAGAATG
CGCAGGGAATCGTGGCGTTTTAG
back to top

protein sequence of Ggra10681.t1

>Ggra10681.t1 ID=Ggra10681.t1|Name=Ggra10681.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=341bp
MAMARIPLFITVLLTTFVLSCASLPRFPRDVGSFIKPRRSPFVGGVYAMS
NNVTENTMVVYARRPDGTLQLLDGALKTGGRGAVLAPDAVFDPLLIPIPR
SQRRLSFRPSGITFSPDRRTLVVTNLFAGLNAIAAGGVREIFTYSVSATG
LLSVVPVANAASTELGNSEGRNLPGAIGLEVVEERGVQYVVVPEVRSLAG
ADGMAPADQAASVSTWALDSESMLSPVQLDVPVGPSVSSGQMDSCWIMFS
NDLSNFWVASTPTNATSVFSFEGGISTLEEEVAASVTFPVDLWLSSDSKF
FYQLQAGSVSAFEIGDGGSLTLIQNPMNIPDENAQGIVAF*
back to top

mRNA from alignment at tig00000888_pilon:15505..16797-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra10681.t1 ID=Ggra10681.t1|Name=Ggra10681.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1293bp|location=Sequence derived from alignment at tig00000888_pilon:15505..16797- (Gracilaria gracilis GNS1m male)
ATGGCTATGGCTCGTATCCCGCTGTTCATCACTGTGTTGCTCACCACTTT
CGTGCTTTCATGCGCATCCCTGCCACGCTTTCCCCGCGATGTAGGCAGTT
TCATCAAACCACGCAGATCTCCCTTCGTGGGCGGAGTATACGCCATGTCC
AACAATGTCACCGAGAACACAATGGTGGTGTACGCCCGCCGACCTGACGG
CACCCTTCAGCTGCTGGATGGCGCGCTCAAGACGGGGGGAAGAGGCGCCG
TTCTCGCACCCGACGCCGTGTTCGACCCGCTGTTCTCGGCCTTTTCCGTG
ATCATCACCGATGACAACCGATTCGTACTGGCCGTCAACGCGGGCAGCAG
CTCTGTTTCCGTGTTCAGAGTTCTGCCGGACTTCTCGCTCGCTCTCGTAC
ACGTGCAGCCCGTTCCCGGCTTCGGGCCCAACAGCATTGCAATCTCTAGA
AACATCGTGTACGTCGCCATCACGGACGCAGACGGCGAATTCGACAGCGT
GTTCTCGCAGGAGGGAGCGCTGTTCGGGTTTGCGCTGTCCTCTTCCGGAA
GACTTATCCCGATACCACGCAGCCAGCGACGGCTCTCCTTCCGTCCGTCG
GGCATCACGTTTTCGCCCGACCGTCGCACTCTGGTTGTCACCAACCTGTT
CGCCGGCCTCAATGCCATCGCAGCCGGCGGCGTGCGGGAAATCTTCACGT
ACAGCGTCAGTGCAACTGGGTTGCTCAGCGTGGTTCCAGTGGCAAACGCC
GCGTCGACGGAGCTGGGCAATTCCGAAGGTCGGAACCTGCCGGGCGCGAT
TGGCTTGGAAGTGGTGGAGGAAAGAGGCGTGCAGTACGTGGTGGTGCCTG
AAGTACGCAGTCTCGCCGGGGCCGATGGCATGGCTCCCGCAGACCAAGCC
GCTTCCGTCTCGACGTGGGCGCTCGACTCAGAGAGCATGCTGTCCCCGGT
GCAACTCGATGTGCCGGTCGGGCCTTCCGTGAGCTCCGGTCAAATGGACT
CGTGCTGGATCATGTTCTCCAACGACTTGAGCAACTTTTGGGTGGCTAGC
ACGCCTACAAACGCGACTTCTGTGTTCTCATTCGAAGGCGGGATTTCTAC
TCTTGAGGAAGAGGTTGCGGCGAGTGTAACGTTCCCTGTTGACCTGTGGC
TGTCCAGTGATAGCAAGTTTTTTTACCAATTGCAGGCTGGATCGGTGTCA
GCGTTCGAAATCGGAGACGGCGGAAGTCTCACTCTGATCCAAAACCCTAT
GAACATTCCAGACGAGAATGCGCAGGGAATCGTGGCGTTTTAG
back to top

Coding sequence (CDS) from alignment at tig00000888_pilon:15505..16797-

>Ggra10681.t1 ID=Ggra10681.t1|Name=Ggra10681.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1023bp|location=Sequence derived from alignment at tig00000888_pilon:15505..16797- (Gracilaria gracilis GNS1m male)
ATGGCTATGGCTCGTATCCCGCTGTTCATCACTGTGTTGCTCACCACTTT
CGTGCTTTCATGCGCATCCCTGCCACGCTTTCCCCGCGATGTAGGCAGTT
TCATCAAACCACGCAGATCTCCCTTCGTGGGCGGAGTATACGCCATGTCC
AACAATGTCACCGAGAACACAATGGTGGTGTACGCCCGCCGACCTGACGG
CACCCTTCAGCTGCTGGATGGCGCGCTCAAGACGGGGGGAAGAGGCGCCG
TTCTCGCACCCGACGCCGTGTTCGACCCGCTACTTATCCCGATACCACGC
AGCCAGCGACGGCTCTCCTTCCGTCCGTCGGGCATCACGTTTTCGCCCGA
CCGTCGCACTCTGGTTGTCACCAACCTGTTCGCCGGCCTCAATGCCATCG
CAGCCGGCGGCGTGCGGGAAATCTTCACGTACAGCGTCAGTGCAACTGGG
TTGCTCAGCGTGGTTCCAGTGGCAAACGCCGCGTCGACGGAGCTGGGCAA
TTCCGAAGGTCGGAACCTGCCGGGCGCGATTGGCTTGGAAGTGGTGGAGG
AAAGAGGCGTGCAGTACGTGGTGGTGCCTGAAGTACGCAGTCTCGCCGGG
GCCGATGGCATGGCTCCCGCAGACCAAGCCGCTTCCGTCTCGACGTGGGC
GCTCGACTCAGAGAGCATGCTGTCCCCGGTGCAACTCGATGTGCCGGTCG
GGCCTTCCGTGAGCTCCGGTCAAATGGACTCGTGCTGGATCATGTTCTCC
AACGACTTGAGCAACTTTTGGGTGGCTAGCACGCCTACAAACGCGACTTC
TGTGTTCTCATTCGAAGGCGGGATTTCTACTCTTGAGGAAGAGGTTGCGG
CGAGTGTAACGTTCCCTGTTGACCTGTGGCTGTCCAGTGATAGCAAGTTT
TTTTACCAATTGCAGGCTGGATCGGTGTCAGCGTTCGAAATCGGAGACGG
CGGAAGTCTCACTCTGATCCAAAACCCTATGAACATTCCAGACGAGAATG
CGCAGGGAATCGTGGCGTTTTAG
back to top