Ggra10673.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra10673.t1
Unique Name	Ggra10673.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	564

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000187_pilon	contig	tig00000187_pilon:187477..189269 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	1122223.KB890687_gene2722
Max annot lvl	2\|Bacteria
Evalue	6.93e-34
EggNOG OGs	2DR99@1\|root,33ARP@2\|Bacteria

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra10673	Ggra10673	Gracilaria gracilis GNS1m male	gene	tig00000187_pilon 187477..189269 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra10673.t1	Ggra10673.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000187_pilon 187477..189269 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra10673.t1.start1	Ggra10673.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000187_pilon 187477..187479 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra10673.t1.CDS1	Ggra10673.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000187_pilon 187477..188249 +
Ggra10673.t1.CDS2	Ggra10673.t1.CDS2	Gracilaria gracilis GNS1m male	CDS	tig00000187_pilon 188351..189269 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra10673.t1.exon1	Ggra10673.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000187_pilon 187477..188249 +
Ggra10673.t1.exon2	Ggra10673.t1.exon2	Gracilaria gracilis GNS1m male	exon	tig00000187_pilon 188351..189269 +

The following intron feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra10673.t1.intron1	Ggra10673.t1.intron1	Gracilaria gracilis GNS1m male	intron	tig00000187_pilon 188250..188350 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra10673.t1.stop1	Ggra10673.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000187_pilon 189267..189269 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000187_pilon:187477..189269+
coding sequence from alignment at tig00000187_pilon:187477..189269+

mRNA sequence

>Ggra10673.t1 ID=Ggra10673.t1|Name=Ggra10673.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=564bp
MAPILLVLAHMLLLMPTESNPITCKDHPRYYPHMNPVLLSSWNITNGRTR
TGADYHPRHTKHRFAPVSDQNSTIYQGLDWFYASNYNQPDTDEFIRLSFH
RDAKVYLVIGMMQNPSYPPVTLEGWKSEGWVGLVEGSERKFTVGVHQNYS
RWVPKVAYLFSRRAASYAMLPSQAWVDRKLFGSKKIGSWYVMIAEADGTA
SEPPSGFHRLTEPIVPNAKCPEALHDMWQTPETDSSDPDVSSRWWPTWHP
QWDPCFWCAYDHEHGSSPLVLMNYAPKFGYIARKNHREVESHKGFKCSVF
RFGQYYICFCVHAQTSNLRRVNTRLHSITFVVADADTKELLAEIRHKGYF
GFTGTRKKGGGFMGITEEEESMRIKMMKEKRVTYKRSVNVINEYDLNPIY
SYNKPLTRGSYEEWTTTVLCSEDGPHGMLHMDTRNPVTGIVSVQKSDEAV
KLGNKYKNTFLRNDGSSRRVHFHKFRFGEEYCGFPHLNESDISSIYGVFY
TDALGTTLKNGPGKYHIRQFIKPGFRMEISGSYEMIDPWGSELIPDVSPG
ITSIGYGLDPYAN*

spliced messenger RNA

>Ggra10673.t1 ID=Ggra10673.t1|Name=Ggra10673.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1692bp|location=Sequence derived from alignment at tig00000187_pilon:187477..189269+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTCCAATCCTCCTTGTACTTGCGCATATGCTCTTGCTTATGCCTAC
CGAGTCGAATCCTATAACTTGCAAGGATCATCCAAGATATTATCCACACA
TGAACCCTGTGTTACTTTCGTCATGGAACATCACCAACGGCCGTACCCGT
ACCGGCGCAGATTACCATCCGCGTCATACCAAACATCGATTCGCGCCAGT
GTCAGATCAAAACTCTACCATCTACCAAGGTCTGGACTGGTTTTATGCTT
CCAACTACAACCAACCTGACACCGACGAATTCATTCGCCTCAGTTTTCAT
CGGGATGCAAAGGTTTATTTAGTGATCGGCATGATGCAGAACCCCAGCTA
TCCCCCTGTAACTTTAGAAGGATGGAAGAGTGAAGGCTGGGTTGGGCTAG
TGGAGGGTTCTGAAAGAAAATTTACAGTTGGAGTTCATCAGAACTACTCT
AGATGGGTTCCGAAAGTTGCGTACCTATTTTCTCGAAGAGCCGCTAGCTA
CGCCATGCTTCCTTCTCAAGCATGGGTTGACAGAAAACTCTTTGGATCGA
AGAAAATTGGGTCTTGGTACGTCATGATTGCAGAGGCTGATGGAACGGCG
TCGGAGCCTCCCTCTGGTTTCCATCGTTTGACAGAACCCATTGTACCAAA
TGCAAAATGCCCCGAAGCTTTGCACGACATGTGGCAAACTCCGGAAACCG
ACTCATCCGATCCGGACGTCAGCTCAAGATGGTGGCCTACATGGCACCCG
CAATGGGATCCTTGCTTCTGGTGCGCGTACGATCACGAACACGGATCATC
GCCTCTTGTTTTGATGAACTATGCCCCGAAATTCGGTTACATAGCGCGGA
AAAATCATCGTGAAGTCGAATCGCACAAAGGTTTCAAGTGCTCTGTTTTC
CGGTTTGGACAGTACTACATATGTTTCTGCGTTCATGCGCAGACCTCCAA
CTTACGTCGCGTAAACACTCGACTCCATTCCATAACCTTCGTGGTTGCGG
ATGCGGATACGAAAGAATTACTTGCAGAAATCAGACACAAGGGATACTTT
GGATTTACAGGTACAAGGAAGAAGGGGGGTGGTTTCATGGGGATCACTGA
GGAAGAAGAATCAATGAGAATCAAAATGATGAAGGAAAAGCGGGTTACTT
ACAAACGCTCAGTAAATGTAATCAACGAATACGATCTGAATCCAATATAC
TCTTACAATAAACCCTTAACGCGAGGAAGCTACGAAGAGTGGACAACGAC
AGTTCTGTGTTCTGAAGATGGTCCCCATGGGATGCTGCACATGGACACTA
GGAACCCAGTGACGGGTATTGTTTCTGTACAGAAGTCGGATGAAGCTGTC
AAGCTTGGAAACAAGTATAAGAACACTTTCTTGCGAAACGATGGGTCTTC
TCGACGAGTTCATTTCCACAAGTTTCGTTTCGGAGAGGAGTACTGCGGCT
TTCCTCACCTAAATGAGTCTGATATTTCTTCGATCTACGGTGTTTTCTAT
ACAGATGCATTGGGCACGACCTTAAAAAACGGCCCAGGCAAGTACCACAT
TCGACAGTTTATAAAGCCTGGCTTTCGGATGGAAATTAGTGGCTCGTATG
AAATGATTGATCCTTGGGGGAGTGAACTGATTCCGGATGTTAGCCCAGGG
ATTACTAGCATCGGATACGGATTAGATCCATATGCAAACTAG

protein sequence of Ggra10673.t1

>Ggra10673.t1 ID=Ggra10673.t1|Name=Ggra10673.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=564bp
MAPILLVLAHMLLLMPTESNPITCKDHPRYYPHMNPVLLSSWNITNGRTR
TGADYHPRHTKHRFAPVSDQNSTIYQGLDWFYASNYNQPDTDEFIRLSFH
RDAKVYLVIGMMQNPSYPPVTLEGWKSEGWVGLVEGSERKFTVGVHQNYS
RWVPKVAYLFSRRAASYAMLPSQAWVDRKLFGSKKIGSWYVMIAEADGTA
SEPPSGFHRLTEPIVPNAKCPEALHDMWQTPETDSSDPDVSSRWWPTWHP
QWDPCFWCAYDHEHGSSPLVLMNYAPKFGYIARKNHREVESHKGFKCSVF
RFGQYYICFCVHAQTSNLRRVNTRLHSITFVVADADTKELLAEIRHKGYF
GFTGTRKKGGGFMGITEEEESMRIKMMKEKRVTYKRSVNVINEYDLNPIY
SYNKPLTRGSYEEWTTTVLCSEDGPHGMLHMDTRNPVTGIVSVQKSDEAV
KLGNKYKNTFLRNDGSSRRVHFHKFRFGEEYCGFPHLNESDISSIYGVFY
TDALGTTLKNGPGKYHIRQFIKPGFRMEISGSYEMIDPWGSELIPDVSPG
ITSIGYGLDPYAN*

mRNA from alignment at tig00000187_pilon:187477..189269+

Legend: polypeptidestart_codonCDSexonintronstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra10673.t1 ID=Ggra10673.t1|Name=Ggra10673.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1793bp|location=Sequence derived from alignment at tig00000187_pilon:187477..189269+ (Gracilaria gracilis GNS1m male)
ATGGCTCCAATCCTCCTTGTACTTGCGCATATGCTCTTGCTTATGCCTAC
CGAGTCGAATCCTATAACTTGCAAGGATCATCCAAGATATTATCCACACA
TGAACCCTGTGTTACTTTCGTCATGGAACATCACCAACGGCCGTACCCGT
ACCGGCGCAGATTACCATCCGCGTCATACCAAACATCGATTCGCGCCAGT
GTCAGATCAAAACTCTACCATCTACCAAGGTCTGGACTGGTTTTATGCTT
CCAACTACAACCAACCTGACACCGACGAATTCATTCGCCTCAGTTTTCAT
CGGGATGCAAAGGTTTATTTAGTGATCGGCATGATGCAGAACCCCAGCTA
TCCCCCTGTAACTTTAGAAGGATGGAAGAGTGAAGGCTGGGTTGGGCTAG
TGGAGGGTTCTGAAAGAAAATTTACAGTTGGAGTTCATCAGAACTACTCT
AGATGGGTTCCGAAAGTTGCGTACCTATTTTCTCGAAGAGCCGCTAGCTA
CGCCATGCTTCCTTCTCAAGCATGGGTTGACAGAAAACTCTTTGGATCGA
AGAAAATTGGGTCTTGGTACGTCATGATTGCAGAGGCTGATGGAACGGCG
TCGGAGCCTCCCTCTGGTTTCCATCGTTTGACAGAACCCATTGTACCAAA
TGCAAAATGCCCCGAAGCTTTGCACGACATGTGGCAAACTCCGGAAACCG
ACTCATCCGATCCGGACGTCAGCTCAAGATGGTGGCCTACATGGCACCCG
CAATGGGATCCTTGCTTCTGGTGGTGAGTCCTGTCCTGTCCTATCGAATA
GTTTCCTATCCAAGATATTGTGCACCATCACTAACTTCCTGTCTAATTCT
CTGTCATGCGCAACATCGAGACAGCGCGTACGATCACGAACACGGATCAT
CGCCTCTTGTTTTGATGAACTATGCCCCGAAATTCGGTTACATAGCGCGG
AAAAATCATCGTGAAGTCGAATCGCACAAAGGTTTCAAGTGCTCTGTTTT
CCGGTTTGGACAGTACTACATATGTTTCTGCGTTCATGCGCAGACCTCCA
ACTTACGTCGCGTAAACACTCGACTCCATTCCATAACCTTCGTGGTTGCG
GATGCGGATACGAAAGAATTACTTGCAGAAATCAGACACAAGGGATACTT
TGGATTTACAGGTACAAGGAAGAAGGGGGGTGGTTTCATGGGGATCACTG
AGGAAGAAGAATCAATGAGAATCAAAATGATGAAGGAAAAGCGGGTTACT
TACAAACGCTCAGTAAATGTAATCAACGAATACGATCTGAATCCAATATA
CTCTTACAATAAACCCTTAACGCGAGGAAGCTACGAAGAGTGGACAACGA
CAGTTCTGTGTTCTGAAGATGGTCCCCATGGGATGCTGCACATGGACACT
AGGAACCCAGTGACGGGTATTGTTTCTGTACAGAAGTCGGATGAAGCTGT
CAAGCTTGGAAACAAGTATAAGAACACTTTCTTGCGAAACGATGGGTCTT
CTCGACGAGTTCATTTCCACAAGTTTCGTTTCGGAGAGGAGTACTGCGGC
TTTCCTCACCTAAATGAGTCTGATATTTCTTCGATCTACGGTGTTTTCTA
TACAGATGCATTGGGCACGACCTTAAAAAACGGCCCAGGCAAGTACCACA
TTCGACAGTTTATAAAGCCTGGCTTTCGGATGGAAATTAGTGGCTCGTAT
GAAATGATTGATCCTTGGGGGAGTGAACTGATTCCGGATGTTAGCCCAGG
GATTACTAGCATCGGATACGGATTAGATCCATATGCAAACTAG

Coding sequence (CDS) from alignment at tig00000187_pilon:187477..189269+

>Ggra10673.t1 ID=Ggra10673.t1|Name=Ggra10673.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1692bp|location=Sequence derived from alignment at tig00000187_pilon:187477..189269+ (Gracilaria gracilis GNS1m male)
ATGGCTCCAATCCTCCTTGTACTTGCGCATATGCTCTTGCTTATGCCTAC
CGAGTCGAATCCTATAACTTGCAAGGATCATCCAAGATATTATCCACACA
TGAACCCTGTGTTACTTTCGTCATGGAACATCACCAACGGCCGTACCCGT
ACCGGCGCAGATTACCATCCGCGTCATACCAAACATCGATTCGCGCCAGT
GTCAGATCAAAACTCTACCATCTACCAAGGTCTGGACTGGTTTTATGCTT
CCAACTACAACCAACCTGACACCGACGAATTCATTCGCCTCAGTTTTCAT
CGGGATGCAAAGGTTTATTTAGTGATCGGCATGATGCAGAACCCCAGCTA
TCCCCCTGTAACTTTAGAAGGATGGAAGAGTGAAGGCTGGGTTGGGCTAG
TGGAGGGTTCTGAAAGAAAATTTACAGTTGGAGTTCATCAGAACTACTCT
AGATGGGTTCCGAAAGTTGCGTACCTATTTTCTCGAAGAGCCGCTAGCTA
CGCCATGCTTCCTTCTCAAGCATGGGTTGACAGAAAACTCTTTGGATCGA
AGAAAATTGGGTCTTGGTACGTCATGATTGCAGAGGCTGATGGAACGGCG
TCGGAGCCTCCCTCTGGTTTCCATCGTTTGACAGAACCCATTGTACCAAA
TGCAAAATGCCCCGAAGCTTTGCACGACATGTGGCAAACTCCGGAAACCG
ACTCATCCGATCCGGACGTCAGCTCAAGATGGTGGCCTACATGGCACCCG
CAATGGGATCCTTGCTTCTGGTGCGCGTACGATCACGAACACGGATCATC
GCCTCTTGTTTTGATGAACTATGCCCCGAAATTCGGTTACATAGCGCGGA
AAAATCATCGTGAAGTCGAATCGCACAAAGGTTTCAAGTGCTCTGTTTTC
CGGTTTGGACAGTACTACATATGTTTCTGCGTTCATGCGCAGACCTCCAA
CTTACGTCGCGTAAACACTCGACTCCATTCCATAACCTTCGTGGTTGCGG
ATGCGGATACGAAAGAATTACTTGCAGAAATCAGACACAAGGGATACTTT
GGATTTACAGGTACAAGGAAGAAGGGGGGTGGTTTCATGGGGATCACTGA
GGAAGAAGAATCAATGAGAATCAAAATGATGAAGGAAAAGCGGGTTACTT
ACAAACGCTCAGTAAATGTAATCAACGAATACGATCTGAATCCAATATAC
TCTTACAATAAACCCTTAACGCGAGGAAGCTACGAAGAGTGGACAACGAC
AGTTCTGTGTTCTGAAGATGGTCCCCATGGGATGCTGCACATGGACACTA
GGAACCCAGTGACGGGTATTGTTTCTGTACAGAAGTCGGATGAAGCTGTC
AAGCTTGGAAACAAGTATAAGAACACTTTCTTGCGAAACGATGGGTCTTC
TCGACGAGTTCATTTCCACAAGTTTCGTTTCGGAGAGGAGTACTGCGGCT
TTCCTCACCTAAATGAGTCTGATATTTCTTCGATCTACGGTGTTTTCTAT
ACAGATGCATTGGGCACGACCTTAAAAAACGGCCCAGGCAAGTACCACAT
TCGACAGTTTATAAAGCCTGGCTTTCGGATGGAAATTAGTGGCTCGTATG
AAATGATTGATCCTTGGGGGAGTGAACTGATTCCGGATGTTAGCCCAGGG
ATTACTAGCATCGGATACGGATTAGATCCATATGCAAACTAG