Ggra10672.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra10672.t1
Unique NameGgra10672.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length289
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000187_piloncontigtig00000187_pilon:143033..143899 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog7370.XP_005189128.1
Preferred nameVRK1
PFAMsPkinase
Max annot lvl33208|Metazoa
KEGG koko:K08816
GOsGO:0000003,GO:0000070,GO:0000226,GO:0000278,GO:0000280,GO:0000785,GO:0000819,GO:0001708,GO:0003006,GO:0003674,GO:0003682,GO:0003824,GO:0004672,GO:0004674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005654,GO:0005694,GO:0005730,GO:0005737,GO:0005794,GO:0005795,GO:0005829,GO:0006323,GO:0006325,GO:0006464,GO:0006468,GO:0006793,GO:0006796,GO:0006807,GO:0006996,GO:0006997,GO:0006998,GO:0007010,GO:0007017,GO:0007030,GO:0007049,GO:0007051,GO:0007052,GO:0007059,GO:0007077,GO:0007084,GO:0007127,GO:0007129,GO:0007130,GO:0007143,GO:0007163,GO:0007275,GO:0007276,GO:0007281,GO:0007292,GO:0007548,GO:0008150,GO:0008152,GO:0008360,GO:0008406,GO:0009653,GO:0009966,GO:0009987,GO:0010256,GO:0010646,GO:0010927,GO:0012505,GO:0016043,GO:0016301,GO:0016310,GO:0016569,GO:0016570,GO:0016572,GO:0016740,GO:0016772,GO:0016773,GO:0018105,GO:0018107,GO:0018193,GO:0018209,GO:0018210,GO:0019538,GO:0019827,GO:0019899,GO:0019900,GO:0019901,GO:0019953,GO:0022402,GO:0022411,GO:0022412,GO:0022414,GO:0022603,GO:0022604,GO:0022607,GO:0023051,GO:0030016,GO:0030017,GO:0030018,GO:0030029,GO:0030036,GO:0030154,GO:0030239,GO:0030261,GO:0030397,GO:0030717,GO:0030718,GO:0031032,GO:0031430,GO:0031468,GO:0031491,GO:0031493,GO:0031672,GO:0031674,GO:0031967,GO:0031974,GO:0031975,GO:0031981,GO:0031984,GO:0032501,GO:0032502,GO:0032504,GO:0032989,GO:0035173,GO:0035174,GO:0035175,GO:0035184,GO:0035404,GO:0035405,GO:0036098,GO:0036099,GO:0036211,GO:0040011,GO:0040036,GO:0042393,GO:0042692,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043292,GO:0043412,GO:0043987,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044431,GO:0044444,GO:0044446,GO:0044449,GO:0044464,GO:0044703,GO:0044877,GO:0045132,GO:0045137,GO:0045143,GO:0045165,GO:0045214,GO:0046777,GO:0048285,GO:0048308,GO:0048313,GO:0048468,GO:0048477,GO:0048513,GO:0048583,GO:0048608,GO:0048609,GO:0048646,GO:0048731,GO:0048856,GO:0048869,GO:0050789,GO:0050793,GO:0050794,GO:0051081,GO:0051128,GO:0051146,GO:0051276,GO:0051321,GO:0051704,GO:0055001,GO:0055002,GO:0060361,GO:0061024,GO:0061061,GO:0061458,GO:0061982,GO:0061988,GO:0065007,GO:0065008,GO:0070013,GO:0070192,GO:0070193,GO:0070925,GO:0071103,GO:0071704,GO:0071840,GO:0072354,GO:0072355,GO:0090166,GO:0090287,GO:0097150,GO:0097435,GO:0098727,GO:0098791,GO:0098813,GO:0099080,GO:0099081,GO:0099512,GO:0140013,GO:0140014,GO:0140096,GO:1901564,GO:1902850,GO:1903008,GO:1903046,GO:1903047
Evalue1.63e-15
EggNOG OGsKOG1164@1|root,KOG1164@2759|Eukaryota,38GMB@33154|Opisthokonta,3BF8J@33208|Metazoa,3CZXV@33213|Bilateria,41U9G@6656|Arthropoda,3SJPV@50557|Insecta,44XTE@7147|Diptera
EC2.7.11.1
DescriptionIt is involved in the biological process described with protein phosphorylation
COG categoryT
BRITEko00000,ko01000,ko01001
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra10672Ggra10672Gracilaria gracilis GNS1m malegenetig00000187_pilon 143033..143899 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10672.t1.stop1Ggra10672.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000187_pilon 143033..143035 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10672.t1.CDS1Ggra10672.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000187_pilon 143033..143899 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10672.t1.exon1Ggra10672.t1.exon1Gracilaria gracilis GNS1m maleexontig00000187_pilon 143033..143899 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10672.t1.start1Ggra10672.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000187_pilon 143897..143899 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10672.t1Ggra10672.t1Gracilaria gracilis GNS1m malepolypeptidetig00000187_pilon 143033..143899 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra10672.t1 ID=Ggra10672.t1|Name=Ggra10672.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=289bp
MSRFDVDFENEILNGRWFVGEELDSGANGVVHTVTDRRRRSSPSVVKFGC
ALDDHPNVVAAARNALKHESDMLRFLNHRAPSLNIPNVVDYGYHKTFPYF
VMNRFGRDVAKLWSDSNWRFSNVTILKITYDVLDTVEGLHENGVFHGDIK
AGNVVRGGPGQDQSVVYLIDFGLSNPLTREMQIRDVADTLNLMVRMLSNG
RRTLLAEMDFLPSDWTEATTDMQEEARRNIEKAYEIRERRGTPLPNEIRT
LVDEFFESHTPNYHRMKALLQRAFRTVRDPNENGFDWQ*
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spliced messenger RNA

>Ggra10672.t1 ID=Ggra10672.t1|Name=Ggra10672.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=867bp|location=Sequence derived from alignment at tig00000187_pilon:143033..143899- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGCCGTTTCGATGTAGATTTCGAGAATGAAATATTGAATGGCAGATG
GTTTGTCGGAGAGGAGTTGGATTCTGGTGCAAATGGAGTAGTGCATACTG
TCACTGACCGCAGGAGGAGAAGTAGTCCATCAGTGGTCAAGTTTGGCTGC
GCGCTCGATGACCATCCGAATGTAGTTGCGGCAGCCAGAAACGCTCTGAA
GCACGAGAGTGATATGCTTAGATTCCTGAACCACCGAGCACCCTCTTTGA
ATATCCCCAACGTAGTCGACTACGGTTATCATAAAACGTTTCCGTACTTT
GTCATGAACAGATTTGGCAGAGATGTAGCCAAGCTTTGGAGCGATTCGAA
CTGGCGCTTCTCTAACGTAACTATACTCAAAATAACGTACGATGTGCTGG
ACACTGTTGAAGGTCTTCATGAGAATGGCGTCTTCCATGGGGATATCAAG
GCAGGAAACGTTGTTCGTGGTGGTCCTGGGCAGGACCAGAGCGTAGTTTA
TCTGATTGACTTTGGTCTATCAAACCCGCTCACAAGGGAGATGCAAATTA
GAGACGTAGCAGACACTCTCAACCTAATGGTAAGAATGCTCTCAAATGGT
AGGAGAACTCTCCTGGCTGAGATGGATTTCTTACCCTCCGATTGGACTGA
AGCGACGACAGATATGCAAGAAGAGGCCCGCCGGAATATTGAGAAGGCTT
ACGAAATTCGAGAGAGACGAGGTACCCCTTTGCCAAACGAAATTCGTACA
TTAGTCGATGAATTTTTCGAAAGCCACACTCCCAACTACCATCGAATGAA
AGCGCTGCTCCAAAGGGCTTTTCGAACAGTACGTGACCCAAATGAGAACG
GGTTTGACTGGCAATAA
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protein sequence of Ggra10672.t1

>Ggra10672.t1 ID=Ggra10672.t1|Name=Ggra10672.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=289bp
MSRFDVDFENEILNGRWFVGEELDSGANGVVHTVTDRRRRSSPSVVKFGC
ALDDHPNVVAAARNALKHESDMLRFLNHRAPSLNIPNVVDYGYHKTFPYF
VMNRFGRDVAKLWSDSNWRFSNVTILKITYDVLDTVEGLHENGVFHGDIK
AGNVVRGGPGQDQSVVYLIDFGLSNPLTREMQIRDVADTLNLMVRMLSNG
RRTLLAEMDFLPSDWTEATTDMQEEARRNIEKAYEIRERRGTPLPNEIRT
LVDEFFESHTPNYHRMKALLQRAFRTVRDPNENGFDWQ*
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mRNA from alignment at tig00000187_pilon:143033..143899-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra10672.t1 ID=Ggra10672.t1|Name=Ggra10672.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=867bp|location=Sequence derived from alignment at tig00000187_pilon:143033..143899- (Gracilaria gracilis GNS1m male)
ATGAGCCGTTTCGATGTAGATTTCGAGAATGAAATATTGAATGGCAGATG
GTTTGTCGGAGAGGAGTTGGATTCTGGTGCAAATGGAGTAGTGCATACTG
TCACTGACCGCAGGAGGAGAAGTAGTCCATCAGTGGTCAAGTTTGGCTGC
GCGCTCGATGACCATCCGAATGTAGTTGCGGCAGCCAGAAACGCTCTGAA
GCACGAGAGTGATATGCTTAGATTCCTGAACCACCGAGCACCCTCTTTGA
ATATCCCCAACGTAGTCGACTACGGTTATCATAAAACGTTTCCGTACTTT
GTCATGAACAGATTTGGCAGAGATGTAGCCAAGCTTTGGAGCGATTCGAA
CTGGCGCTTCTCTAACGTAACTATACTCAAAATAACGTACGATGTGCTGG
ACACTGTTGAAGGTCTTCATGAGAATGGCGTCTTCCATGGGGATATCAAG
GCAGGAAACGTTGTTCGTGGTGGTCCTGGGCAGGACCAGAGCGTAGTTTA
TCTGATTGACTTTGGTCTATCAAACCCGCTCACAAGGGAGATGCAAATTA
GAGACGTAGCAGACACTCTCAACCTAATGGTAAGAATGCTCTCAAATGGT
AGGAGAACTCTCCTGGCTGAGATGGATTTCTTACCCTCCGATTGGACTGA
AGCGACGACAGATATGCAAGAAGAGGCCCGCCGGAATATTGAGAAGGCTT
ACGAAATTCGAGAGAGACGAGGTACCCCTTTGCCAAACGAAATTCGTACA
TTAGTCGATGAATTTTTCGAAAGCCACACTCCCAACTACCATCGAATGAA
AGCGCTGCTCCAAAGGGCTTTTCGAACAGTACGTGACCCAAATGAGAACG
GGTTTGACTGGCAATAA
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Coding sequence (CDS) from alignment at tig00000187_pilon:143033..143899-

>Ggra10672.t1 ID=Ggra10672.t1|Name=Ggra10672.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=867bp|location=Sequence derived from alignment at tig00000187_pilon:143033..143899- (Gracilaria gracilis GNS1m male)
ATGAGCCGTTTCGATGTAGATTTCGAGAATGAAATATTGAATGGCAGATG
GTTTGTCGGAGAGGAGTTGGATTCTGGTGCAAATGGAGTAGTGCATACTG
TCACTGACCGCAGGAGGAGAAGTAGTCCATCAGTGGTCAAGTTTGGCTGC
GCGCTCGATGACCATCCGAATGTAGTTGCGGCAGCCAGAAACGCTCTGAA
GCACGAGAGTGATATGCTTAGATTCCTGAACCACCGAGCACCCTCTTTGA
ATATCCCCAACGTAGTCGACTACGGTTATCATAAAACGTTTCCGTACTTT
GTCATGAACAGATTTGGCAGAGATGTAGCCAAGCTTTGGAGCGATTCGAA
CTGGCGCTTCTCTAACGTAACTATACTCAAAATAACGTACGATGTGCTGG
ACACTGTTGAAGGTCTTCATGAGAATGGCGTCTTCCATGGGGATATCAAG
GCAGGAAACGTTGTTCGTGGTGGTCCTGGGCAGGACCAGAGCGTAGTTTA
TCTGATTGACTTTGGTCTATCAAACCCGCTCACAAGGGAGATGCAAATTA
GAGACGTAGCAGACACTCTCAACCTAATGGTAAGAATGCTCTCAAATGGT
AGGAGAACTCTCCTGGCTGAGATGGATTTCTTACCCTCCGATTGGACTGA
AGCGACGACAGATATGCAAGAAGAGGCCCGCCGGAATATTGAGAAGGCTT
ACGAAATTCGAGAGAGACGAGGTACCCCTTTGCCAAACGAAATTCGTACA
TTAGTCGATGAATTTTTCGAAAGCCACACTCCCAACTACCATCGAATGAA
AGCGCTGCTCCAAAGGGCTTTTCGAACAGTACGTGACCCAAATGAGAACG
GGTTTGACTGGCAATAA
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