Ggra10668.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra10668.t1
Unique NameGgra10668.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length532
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000187_piloncontigtig00000187_pilon:54375..56168 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog1122223.KB890687_gene2722
Max annot lvl2|Bacteria
Evalue1.61e-16
EggNOG OGs2DR99@1|root,33ARP@2|Bacteria
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra10668Ggra10668Gracilaria gracilis GNS1m malegenetig00000187_pilon 54375..56168 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10668.t1Ggra10668.t1Gracilaria gracilis GNS1m malepolypeptidetig00000187_pilon 54375..56168 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10668.t1.stop1Ggra10668.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000187_pilon 54375..54377 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10668.t1.CDS1Ggra10668.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000187_pilon 54375..55081 -
Ggra10668.t1.CDS2Ggra10668.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000187_pilon 55187..55302 -
Ggra10668.t1.CDS3Ggra10668.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000187_pilon 55396..56168 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10668.t1.exon1Ggra10668.t1.exon1Gracilaria gracilis GNS1m maleexontig00000187_pilon 54375..55081 -
Ggra10668.t1.exon2Ggra10668.t1.exon2Gracilaria gracilis GNS1m maleexontig00000187_pilon 55187..55302 -
Ggra10668.t1.exon3Ggra10668.t1.exon3Gracilaria gracilis GNS1m maleexontig00000187_pilon 55396..56168 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10668.t1.intron1Ggra10668.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000187_pilon 55082..55186 -
Ggra10668.t1.intron2Ggra10668.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000187_pilon 55303..55395 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10668.t1.start1Ggra10668.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000187_pilon 56166..56168 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra10668.t1 ID=Ggra10668.t1|Name=Ggra10668.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=532bp
MKLMAPVLVSALLIVSVLSKPLTCADHPAYFPSLNPVLLSSWTILEGRKT
TDAVYYPRYTTHRFAPVSNASSMIYSGLDWFVPSNYKQPTTENFIQLNLH
RDAEVFLIIGVRYSRKHPSLALPGWKSEGWVTRVDGLDNQFMYGVHQKSS
KHLRKNAYIFSKSAKGSATLPSSNWIGRRISGAKTSGGWYAMIGEKNGKP
STTPKPPSTVENDILPNQRCPDSLHRLWVTPETDASDPDVSGKMWPTWHP
QWDPCYWCAYDHEHGSSPLSLMNYSPKFGYTPWKNYREDESHEGFKFSDA
STKELLAEVTHKGFFGFTGTRKRGGGFLGLTEKEENTRLELSANGGATNK
RSVNVINVKSLNHAYAYNEDAVLRGRYEEWTTNPICSGRGRHGMLNLDFR
NPITAIVSTRNIHQSVNLGREKDGILTRNDGSSRILRFRDFAFGQDHCDF
PQFDIYGGRSTGGTFYTDPSGTVLMNGPGKTNVRQFVKLGFKMEMSGYHQ
YDVVDPWGGELIFDTDAGRSSDGYGLDPDVN*
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spliced messenger RNA

>Ggra10668.t1 ID=Ggra10668.t1|Name=Ggra10668.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1596bp|location=Sequence derived from alignment at tig00000187_pilon:54375..56168- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAACTAATGGCACCCGTTCTCGTTAGCGCTCTTCTGATTGTCTCTGT
ACTATCCAAACCTCTAACATGTGCGGATCACCCAGCATACTTTCCTTCTC
TGAATCCAGTGCTTTTGTCGTCATGGACAATTCTCGAAGGGCGAAAGACA
ACGGACGCTGTTTATTACCCTCGATACACCACTCATCGCTTCGCTCCAGT
TTCCAATGCATCTTCTATGATCTATAGTGGTCTAGACTGGTTTGTCCCTT
CAAACTATAAACAGCCTACCACTGAAAACTTCATCCAGCTCAATCTGCAC
CGCGATGCCGAAGTCTTTTTGATCATTGGGGTACGTTACTCTAGAAAGCA
TCCCTCACTCGCTCTACCCGGATGGAAAAGCGAAGGTTGGGTGACCCGTG
TGGATGGTCTGGATAACCAATTTATGTATGGTGTACACCAGAAAAGTTCG
AAACACCTTCGCAAAAATGCGTATATCTTCTCAAAGAGCGCGAAAGGCAG
TGCTACTTTGCCTTCTTCGAACTGGATTGGACGACGTATCTCGGGTGCGA
AAACTTCCGGAGGATGGTATGCTATGATTGGAGAAAAAAATGGCAAACCA
TCAACTACTCCGAAGCCACCATCGACGGTGGAGAACGATATTCTTCCCAA
CCAAAGATGTCCTGATTCCCTTCATAGACTGTGGGTGACACCAGAAACTG
ATGCTTCAGATCCAGATGTCAGTGGGAAAATGTGGCCTACATGGCATCCA
CAATGGGACCCATGTTACTGGTGTGCTTATGACCATGAACACGGATCTTC
CCCACTTTCCTTGATGAATTATTCTCCAAAGTTCGGATACACTCCATGGA
AGAATTACAGAGAAGATGAGTCACACGAGGGTTTCAAGTTTTCGGATGCC
TCAACGAAAGAGCTGCTCGCAGAGGTTACTCACAAGGGCTTCTTTGGTTT
CACAGGGACTAGAAAGCGAGGGGGAGGATTCTTGGGTTTAACCGAAAAAG
AAGAGAACACAAGGCTAGAACTGAGTGCAAACGGAGGTGCCACGAACAAG
CGCTCAGTGAATGTCATAAACGTCAAATCTCTCAACCATGCTTATGCGTA
CAACGAAGACGCGGTGCTGCGAGGCAGGTATGAAGAGTGGACAACGAACC
CTATCTGCTCTGGTCGAGGTCGCCATGGCATGCTCAACTTGGACTTCCGG
AACCCCATCACCGCCATTGTTTCAACACGAAATATTCACCAAAGCGTGAA
TCTTGGCAGGGAAAAGGACGGGATATTAACTCGAAACGATGGGTCGTCTC
GAATCCTTCGTTTTCGTGACTTTGCTTTTGGTCAGGACCACTGTGACTTT
CCTCAATTCGACATCTATGGCGGCCGTTCTACGGGCGGAACTTTCTATAC
AGACCCGAGTGGTACAGTGCTGATGAACGGGCCGGGCAAGACCAATGTCC
GTCAGTTCGTGAAACTTGGCTTCAAGATGGAGATGTCCGGGTATCATCAA
TATGACGTGGTAGACCCATGGGGTGGCGAGTTGATCTTCGACACGGATGC
TGGTCGAAGTAGTGACGGATATGGGCTAGACCCTGATGTGAACTGA
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protein sequence of Ggra10668.t1

>Ggra10668.t1 ID=Ggra10668.t1|Name=Ggra10668.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=532bp
MKLMAPVLVSALLIVSVLSKPLTCADHPAYFPSLNPVLLSSWTILEGRKT
TDAVYYPRYTTHRFAPVSNASSMIYSGLDWFVPSNYKQPTTENFIQLNLH
RDAEVFLIIGVRYSRKHPSLALPGWKSEGWVTRVDGLDNQFMYGVHQKSS
KHLRKNAYIFSKSAKGSATLPSSNWIGRRISGAKTSGGWYAMIGEKNGKP
STTPKPPSTVENDILPNQRCPDSLHRLWVTPETDASDPDVSGKMWPTWHP
QWDPCYWCAYDHEHGSSPLSLMNYSPKFGYTPWKNYREDESHEGFKFSDA
STKELLAEVTHKGFFGFTGTRKRGGGFLGLTEKEENTRLELSANGGATNK
RSVNVINVKSLNHAYAYNEDAVLRGRYEEWTTNPICSGRGRHGMLNLDFR
NPITAIVSTRNIHQSVNLGREKDGILTRNDGSSRILRFRDFAFGQDHCDF
PQFDIYGGRSTGGTFYTDPSGTVLMNGPGKTNVRQFVKLGFKMEMSGYHQ
YDVVDPWGGELIFDTDAGRSSDGYGLDPDVN*
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mRNA from alignment at tig00000187_pilon:54375..56168-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra10668.t1 ID=Ggra10668.t1|Name=Ggra10668.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1794bp|location=Sequence derived from alignment at tig00000187_pilon:54375..56168- (Gracilaria gracilis GNS1m male)
ATGAAACTAATGGCACCCGTTCTCGTTAGCGCTCTTCTGATTGTCTCTGT
ACTATCCAAACCTCTAACATGTGCGGATCACCCAGCATACTTTCCTTCTC
TGAATCCAGTGCTTTTGTCGTCATGGACAATTCTCGAAGGGCGAAAGACA
ACGGACGCTGTTTATTACCCTCGATACACCACTCATCGCTTCGCTCCAGT
TTCCAATGCATCTTCTATGATCTATAGTGGTCTAGACTGGTTTGTCCCTT
CAAACTATAAACAGCCTACCACTGAAAACTTCATCCAGCTCAATCTGCAC
CGCGATGCCGAAGTCTTTTTGATCATTGGGGTACGTTACTCTAGAAAGCA
TCCCTCACTCGCTCTACCCGGATGGAAAAGCGAAGGTTGGGTGACCCGTG
TGGATGGTCTGGATAACCAATTTATGTATGGTGTACACCAGAAAAGTTCG
AAACACCTTCGCAAAAATGCGTATATCTTCTCAAAGAGCGCGAAAGGCAG
TGCTACTTTGCCTTCTTCGAACTGGATTGGACGACGTATCTCGGGTGCGA
AAACTTCCGGAGGATGGTATGCTATGATTGGAGAAAAAAATGGCAAACCA
TCAACTACTCCGAAGCCACCATCGACGGTGGAGAACGATATTCTTCCCAA
CCAAAGATGTCCTGATTCCCTTCATAGACTGTGGGTGACACCAGAAACTG
ATGCTTCAGATCCAGATGTCAGTGGGAAAATGTGGCCTACATGGCATCCA
CAATGGGACCCATGTTACTGGTGGTACGTTTTCACAACTACACCCTGTCA
TGCTTTCAAAGCTTTTTCGTATCTAACATTTTCTTTTCCTTTTCGTGTTT
TATTTCTTTGACGCAGTGCTTATGACCATGAACACGGATCTTCCCCACTT
TCCTTGATGAATTATTCTCCAAAGTTCGGATACACTCCATGGAAGAATTA
CAGAGAAGATGAGTCACACGAGGGTTTCAAGTGTACGGTTTTCCGGGACA
GGGAATTATATGTGTGTTTCTGTATCCATGCTCAGACGTCATCGCTACGA
CGCGTGAGAGTGCGCACTCATACGATAATCTTTGCAGTTTCGGATGCCTC
AACGAAAGAGCTGCTCGCAGAGGTTACTCACAAGGGCTTCTTTGGTTTCA
CAGGGACTAGAAAGCGAGGGGGAGGATTCTTGGGTTTAACCGAAAAAGAA
GAGAACACAAGGCTAGAACTGAGTGCAAACGGAGGTGCCACGAACAAGCG
CTCAGTGAATGTCATAAACGTCAAATCTCTCAACCATGCTTATGCGTACA
ACGAAGACGCGGTGCTGCGAGGCAGGTATGAAGAGTGGACAACGAACCCT
ATCTGCTCTGGTCGAGGTCGCCATGGCATGCTCAACTTGGACTTCCGGAA
CCCCATCACCGCCATTGTTTCAACACGAAATATTCACCAAAGCGTGAATC
TTGGCAGGGAAAAGGACGGGATATTAACTCGAAACGATGGGTCGTCTCGA
ATCCTTCGTTTTCGTGACTTTGCTTTTGGTCAGGACCACTGTGACTTTCC
TCAATTCGACATCTATGGCGGCCGTTCTACGGGCGGAACTTTCTATACAG
ACCCGAGTGGTACAGTGCTGATGAACGGGCCGGGCAAGACCAATGTCCGT
CAGTTCGTGAAACTTGGCTTCAAGATGGAGATGTCCGGGTATCATCAATA
TGACGTGGTAGACCCATGGGGTGGCGAGTTGATCTTCGACACGGATGCTG
GTCGAAGTAGTGACGGATATGGGCTAGACCCTGATGTGAACTGA
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Coding sequence (CDS) from alignment at tig00000187_pilon:54375..56168-

>Ggra10668.t1 ID=Ggra10668.t1|Name=Ggra10668.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1596bp|location=Sequence derived from alignment at tig00000187_pilon:54375..56168- (Gracilaria gracilis GNS1m male)
ATGAAACTAATGGCACCCGTTCTCGTTAGCGCTCTTCTGATTGTCTCTGT
ACTATCCAAACCTCTAACATGTGCGGATCACCCAGCATACTTTCCTTCTC
TGAATCCAGTGCTTTTGTCGTCATGGACAATTCTCGAAGGGCGAAAGACA
ACGGACGCTGTTTATTACCCTCGATACACCACTCATCGCTTCGCTCCAGT
TTCCAATGCATCTTCTATGATCTATAGTGGTCTAGACTGGTTTGTCCCTT
CAAACTATAAACAGCCTACCACTGAAAACTTCATCCAGCTCAATCTGCAC
CGCGATGCCGAAGTCTTTTTGATCATTGGGGTACGTTACTCTAGAAAGCA
TCCCTCACTCGCTCTACCCGGATGGAAAAGCGAAGGTTGGGTGACCCGTG
TGGATGGTCTGGATAACCAATTTATGTATGGTGTACACCAGAAAAGTTCG
AAACACCTTCGCAAAAATGCGTATATCTTCTCAAAGAGCGCGAAAGGCAG
TGCTACTTTGCCTTCTTCGAACTGGATTGGACGACGTATCTCGGGTGCGA
AAACTTCCGGAGGATGGTATGCTATGATTGGAGAAAAAAATGGCAAACCA
TCAACTACTCCGAAGCCACCATCGACGGTGGAGAACGATATTCTTCCCAA
CCAAAGATGTCCTGATTCCCTTCATAGACTGTGGGTGACACCAGAAACTG
ATGCTTCAGATCCAGATGTCAGTGGGAAAATGTGGCCTACATGGCATCCA
CAATGGGACCCATGTTACTGGTGTGCTTATGACCATGAACACGGATCTTC
CCCACTTTCCTTGATGAATTATTCTCCAAAGTTCGGATACACTCCATGGA
AGAATTACAGAGAAGATGAGTCACACGAGGGTTTCAAGTTTTCGGATGCC
TCAACGAAAGAGCTGCTCGCAGAGGTTACTCACAAGGGCTTCTTTGGTTT
CACAGGGACTAGAAAGCGAGGGGGAGGATTCTTGGGTTTAACCGAAAAAG
AAGAGAACACAAGGCTAGAACTGAGTGCAAACGGAGGTGCCACGAACAAG
CGCTCAGTGAATGTCATAAACGTCAAATCTCTCAACCATGCTTATGCGTA
CAACGAAGACGCGGTGCTGCGAGGCAGGTATGAAGAGTGGACAACGAACC
CTATCTGCTCTGGTCGAGGTCGCCATGGCATGCTCAACTTGGACTTCCGG
AACCCCATCACCGCCATTGTTTCAACACGAAATATTCACCAAAGCGTGAA
TCTTGGCAGGGAAAAGGACGGGATATTAACTCGAAACGATGGGTCGTCTC
GAATCCTTCGTTTTCGTGACTTTGCTTTTGGTCAGGACCACTGTGACTTT
CCTCAATTCGACATCTATGGCGGCCGTTCTACGGGCGGAACTTTCTATAC
AGACCCGAGTGGTACAGTGCTGATGAACGGGCCGGGCAAGACCAATGTCC
GTCAGTTCGTGAAACTTGGCTTCAAGATGGAGATGTCCGGGTATCATCAA
TATGACGTGGTAGACCCATGGGGTGGCGAGTTGATCTTCGACACGGATGC
TGGTCGAAGTAGTGACGGATATGGGCTAGACCCTGATGTGAACTGA
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