Ggra1065.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra1065.t1
Unique NameGgra1065.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length367
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000868_piloncontigtig00000868_pilon:90828..94956 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog4006.Lus10023387
PFAMsRibosomal_L19e
Max annot lvl35493|Streptophyta
KEGG koko:K02885
KEGG Pathwayko03010,map03010
KEGG ModuleM00177,M00179
GOsGO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0005886,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0016020,GO:0019538,GO:0022625,GO:0022626,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0071704,GO:0071944,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904
Evalue4.85e-81
EggNOG OGsCOG1916@1|root,COG2147@1|root,KOG1696@2759|Eukaryota,KOG2860@2759|Eukaryota,37M2R@33090|Viridiplantae,3GC4Q@35493|Streptophyta,4JIXN@91835|fabids
DescriptionBelongs to the eukaryotic ribosomal protein eL19 family
COG categoryJ
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1065Ggra1065Gracilaria gracilis GNS1m malegenetig00000868_pilon 90828..94956 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1065.t1Ggra1065.t1Gracilaria gracilis GNS1m malepolypeptidetig00000868_pilon 90828..94956 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1065.t1.start1Ggra1065.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000868_pilon 90828..90830 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1065.t1.CDS1Ggra1065.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000868_pilon 90828..90939 +
Ggra1065.t1.CDS2Ggra1065.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000868_pilon 91118..91580 +
Ggra1065.t1.CDS3Ggra1065.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000868_pilon 91667..91822 +
Ggra1065.t1.CDS4Ggra1065.t1.CDS4Gracilaria gracilis GNS1m maleCDStig00000868_pilon 94509..94794 +
Ggra1065.t1.CDS5Ggra1065.t1.CDS5Gracilaria gracilis GNS1m maleCDStig00000868_pilon 94873..94956 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1065.t1.exon1Ggra1065.t1.exon1Gracilaria gracilis GNS1m maleexontig00000868_pilon 90828..90939 +
Ggra1065.t1.exon2Ggra1065.t1.exon2Gracilaria gracilis GNS1m maleexontig00000868_pilon 91118..91580 +
Ggra1065.t1.exon3Ggra1065.t1.exon3Gracilaria gracilis GNS1m maleexontig00000868_pilon 91667..91822 +
Ggra1065.t1.exon4Ggra1065.t1.exon4Gracilaria gracilis GNS1m maleexontig00000868_pilon 94509..94794 +
Ggra1065.t1.exon5Ggra1065.t1.exon5Gracilaria gracilis GNS1m maleexontig00000868_pilon 94873..94956 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1065.t1.intron1Ggra1065.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000868_pilon 90940..91117 +
Ggra1065.t1.intron2Ggra1065.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000868_pilon 91581..91666 +
Ggra1065.t1.intron3Ggra1065.t1.intron3Gracilaria gracilis GNS1m maleintrontig00000868_pilon 91823..94508 +
Ggra1065.t1.intron4Ggra1065.t1.intron4Gracilaria gracilis GNS1m maleintrontig00000868_pilon 94795..94872 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1065.t1.stop1Ggra1065.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000868_pilon 94954..94956 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra1065.t1 ID=Ggra1065.t1|Name=Ggra1065.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=367bp
MVSLKLQKRLAASVLGCGKNKVWLDPNEIQEIAIANSRQNIRKLVSDGLV
IKKPVTVHSRARVRKLHAAKSKGRHCGYGKRLGTRDARLPQKVLWMRRQR
VLRNLLRKYREAKKIDRYLYHELYLRCKGNVFKNRRVLMESIHKAKAEKA
RSKAIAEQFEARRLKNRAARERKAARLEERRKQEGVARVATSIRSALKQV
FRAAGHLHSAISPMEQGFGLGARAMILLLSVAGRNQLLDPRYQRSFDDAE
HLLGLAQGVSSSKGNIFKVRDGNFAEQQLELCVARTQLMKRVIEETEENG
ISSGEEMDSNNFFVSDPLLPRCRHNPLHAVPLRNLKKHELSCPSNPEKRR
RAKEEEFQYSYMAPAA*
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spliced messenger RNA

>Ggra1065.t1 ID=Ggra1065.t1|Name=Ggra1065.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1101bp|location=Sequence derived from alignment at tig00000868_pilon:90828..94956+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTCTCTCTCAAATTGCAGAAGAGGCTTGCCGCCTCCGTGCTCGGATG
CGGTAAGAACAAGGTATGGCTTGATCCCAACGAAATTCAGGAGATCGCCA
TCGCCAACTCCAGACAAAATATTCGAAAGCTGGTGTCTGACGGTCTTGTC
ATCAAGAAGCCCGTCACCGTCCACTCTCGCGCCCGAGTTCGCAAGCTCCA
CGCTGCGAAGAGCAAGGGGCGACACTGCGGCTACGGAAAGCGTCTCGGTA
CGCGCGATGCCCGTCTTCCGCAAAAGGTGTTGTGGATGAGGCGTCAGCGT
GTGCTCCGTAATCTTCTCCGCAAGTACCGCGAGGCCAAGAAGATCGATAG
GTATCTCTATCATGAGTTGTATCTTAGATGCAAGGGTAATGTGTTCAAGA
ACAGAAGAGTGCTCATGGAGTCTATCCACAAGGCCAAGGCTGAGAAGGCT
CGTTCCAAGGCTATTGCTGAGCAGTTCGAAGCGCGTCGTCTTAAGAATCG
TGCTGCTAGGGAGCGTAAGGCTGCCCGATTGGAGGAGCGTCGTAAGCAAG
AAGGTGTTGCCCGTGTTGCTACTTCAATTCGATCAGCCTTGAAACAAGTA
TTTAGAGCTGCGGGTCATCTTCATAGCGCCATCTCTCCAATGGAGCAGGG
CTTCGGTTTAGGTGCCCGCGCAATGATTTTGCTTCTGTCAGTTGCAGGGC
GTAATCAACTTTTGGATCCAAGATACCAACGCTCGTTTGATGATGCAGAG
CATTTGCTTGGACTGGCACAAGGTGTATCTTCTTCTAAAGGGAACATCTT
CAAGGTTCGTGATGGAAACTTTGCTGAACAACAGTTGGAACTTTGCGTCG
CCCGCACACAGCTTATGAAACGCGTGATCGAAGAAACCGAAGAAAATGGC
ATATCGTCTGGCGAGGAAATGGATTCAAACAACTTTTTCGTGAGTGATCC
TTTGCTGCCAAGATGTCGTCACAACCCATTACATGCAGTCCCGCTTCGAA
ATCTAAAGAAACACGAACTTTCTTGTCCGTCGAATCCAGAGAAACGAAGG
CGCGCCAAGGAAGAGGAGTTTCAGTACTCGTACATGGCACCGGCTGCATG
A
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protein sequence of Ggra1065.t1

>Ggra1065.t1 ID=Ggra1065.t1|Name=Ggra1065.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=367bp
MVSLKLQKRLAASVLGCGKNKVWLDPNEIQEIAIANSRQNIRKLVSDGLV
IKKPVTVHSRARVRKLHAAKSKGRHCGYGKRLGTRDARLPQKVLWMRRQR
VLRNLLRKYREAKKIDRYLYHELYLRCKGNVFKNRRVLMESIHKAKAEKA
RSKAIAEQFEARRLKNRAARERKAARLEERRKQEGVARVATSIRSALKQV
FRAAGHLHSAISPMEQGFGLGARAMILLLSVAGRNQLLDPRYQRSFDDAE
HLLGLAQGVSSSKGNIFKVRDGNFAEQQLELCVARTQLMKRVIEETEENG
ISSGEEMDSNNFFVSDPLLPRCRHNPLHAVPLRNLKKHELSCPSNPEKRR
RAKEEEFQYSYMAPAA*
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mRNA from alignment at tig00000868_pilon:90828..94956+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra1065.t1 ID=Ggra1065.t1|Name=Ggra1065.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=4129bp|location=Sequence derived from alignment at tig00000868_pilon:90828..94956+ (Gracilaria gracilis GNS1m male)
ATGGTCTCTCTCAAATTGCAGAAGAGGCTTGCCGCCTCCGTGCTCGGATG
CGGTAAGAACAAGGTATGGCTTGATCCCAACGAAATTCAGGAGATCGCCA
TCGCCAACTCCAGTAAGTTTTCGCCCTCAATACCGCCCCCGCAAATCCTC
CATCTGCTTCGTCCTTCCAGCGATACCACCACGTCTTCTTCAAAATGAAC
TCTTCAATACGGCCGTCTTTTCCCTCTTTCAATGGATCTAGTCTAACATT
TTGCTTTGCGCTCCAACACGTCACTGTGTATCACCCACAGGACAAAATAT
TCGAAAGCTGGTGTCTGACGGTCTTGTCATCAAGAAGCCCGTCACCGTCC
ACTCTCGCGCCCGAGTTCGCAAGCTCCACGCTGCGAAGAGCAAGGGGCGA
CACTGCGGCTACGGAAAGCGTCTCGGTACGCGCGATGCCCGTCTTCCGCA
AAAGGTGTTGTGGATGAGGCGTCAGCGTGTGCTCCGTAATCTTCTCCGCA
AGTACCGCGAGGCCAAGAAGATCGATAGGTATCTCTATCATGAGTTGTAT
CTTAGATGCAAGGGTAATGTGTTCAAGAACAGAAGAGTGCTCATGGAGTC
TATCCACAAGGCCAAGGCTGAGAAGGCTCGTTCCAAGGCTATTGCTGAGC
AGTTCGAAGCGCGTCGTCTTAAGAATCGTGCTGCTAGGGAGCGTAAGGCT
GCCCGATTGGAGGAGCGTCGTAAGCAAGAAGGTGTTGCCCGTGTTGCTAC
TTCGTAAAAGTCTACCCAACTCTATAGAGAGCTGCTCTACTTTGTAGAAG
CTACTTTTACACATACAAAACTTTTTCTATGAACCACAGAATTCGATCAG
CCTTGAAACAAGTATTTAGAGCTGCGGGTCATCTTCATAGCGCCATCTCT
CCAATGGAGCAGGGCTTCGGTTTAGGTGCCCGCGCAATGATTTTGCTTCT
GTCAGTTGCAGGGCGTAATCAACTTTTGGATCCAAGATACCAACGGTACA
TCTGCTTCGCCCTTTGTCCCGGTCTCAAAAGCCCACTGGTAGTATTGGCG
TTTAAATTATACGTGGTAAATTCCACGTCCAGTATGGTAGAGGCCCTATC
TCATTTCCTTCGGAGGGTGCGCATCTTGCATTCGGTTGCAAAGGACAGGG
ATTAAAGGCTGTCTCTCTCTCTCAATATGAGCACATAAGCCAATCTAGAG
GCGATCATCACCAATGGTGGCTCACGTTGGAAAGTAACAGTTCATTACAA
AAAGATTTCATGAGGTTCAAATCATTGGAATCGCTTCATAGAGTCCATGT
GTTCCCCTTGGTAGGAGCAACAAAGCGCAAACTGTCCGTAAATAGTTTCG
TTTCAACCTAGTATAAGGAGATCAACTTCAACTGCAATTCAGTGGGGTCA
AGTTTTGACTCAACGTTCGAGAGCTCTTCCTCCCGTGGCGCAGGACATCC
ACATATATATATGTAGACATTTCCCTTCTTAATCTGGATATAAAAAGATT
ACCCGGCGAGAACTACATTCAAAACACTGCTTTCCTTCtaaaagagcaag
ttcttcttctttattatggcctgccgcccctgattccgagacggcaggag
aattaccctacaggtaatcctctctcttagaaaaggccaaaaacttcagc
ggccattgtcttatcatctctactagagacaaatctttcctgtcttcaac
gggtggcaactcattgcgatgcgtcgcgttggtcaaaggacatcgaaaca
acacgtgctccacgtccttcttcaccgcagtgccacatcgtttcaccttc
ttatctaggtacgatgcaacggggtgtaaagcagatTCTGATCCCTTCTC
CCTGGTTAAGGCCTCACAGTTtctctctctctctcatttatgaaacgcgt
gcgtgaattactcgtacgtgggggtatgctaagaaccccaacaacctata
acacttatctctacaccgtagccacaaaccacaaatcagtagccgtgcta
cactcacggggctaaaatatggtacaaagaaagtattaggtacctaaggt
gttttcgaccgcagaagcgtttcatttgcgacgactatcgccttcttctt
cactgaacctctccattcaacctctagagctcgccgcgtaaggtgtacac
caagacaaggggcttcgcatgtacagcttttgtcgccaaaggaaccattg
acgacgtccttcccacccaacccctatatcgtcctcgagatcaggtaaaa
gaaccagcgcgtagGACAGGTTAAAAGTACGATTCAATGGAGAAAGGCCT
CTCTCCGAAGAAAGGCTAAAGTTCGCCGCTAAGCATTTCACTACCCATTT
TCAAGTTATCTTCAAACAAATTAACGCCCTCCCTTGCAATGTCGAGAGCT
TGTCTCCAATTGATTCGACTGAAAGTGGTAAACAAGGGCAATTCGGTCTA
CTATTCATTTTTAAGTTTTGTTGAGCATCCGCAAGACAATTTGTGTAGCA
AgcagtttagcaaatagaaaactgctgtccacattaaagaagaaGAAGAT
GTCACACAAATAGTCTTGCGTTAACTACTCATAAGATAATACTGTACAGT
AGCATCCTCGAAGTCTGTATTACAGACTGCAACCACACCTTGTCCAAAGC
TTGACAATAGAGGCCAGTAGATCCATGTTCCCGGATTTCTGATATTCTTT
AATCCCCTAGTTTTTCCACAACAGCGACATCTTCGATACATTTCATAAAC
TCGGCGATTGAAAGAAATGTGCTTTCTTGAGAAGCGACGGGAAAACAAAG
TTGACTGAATGTGAACAGGAGCTGGAGCAAGAAAAGGGACGGATCGAAGA
AAACGTATTAAGGCCCTACTAACTAACCTTACATGTACCATGCATTCCAG
AAATAGGCACAGATAATGTCTCGCCGGTCAAAACAGAGTCAATCTTTATC
AGAACGGCCAAGTCAAGGGCTGATGACGGGCCGGTCCCGGGTATATCACA
TTAAGGCTTCTTATACATGGACAAAGCTCTCGTGCTGTTATAGGCACACA
AGCCCATAAATTCTAATGAATGCCTTAGGTGAAGACGTGAGAACGCACTA
AAGAGGGTAACAAAACAGCTGTCACAGCAAAGTCCGTTGCAAGACTTTAC
AAAGAGCGAGATTTCGGCCCGCGTTATAGGATCTCTTTCGCAGGTTGCTT
GTAAGGTGGTTCTGCTCCACTTCGGGTACAAGGCAATAGACAATAAATGC
TCAGATTCTCGCTTACATACCCACGGGCATGACATATCTTGGGTTTTCTG
TAGCAAGGCAGTTGGCTCTGTCATGGCATATCCTTTCGGTTAGAAATAAT
TGTTCGTCATGCGTTGGAAACTTCAGTATATATGTCTCCATGCCGCACGT
CATTGGCGGCTTGAATCACTGGGACATGTTGCGCGTCGTTGGACAGAAGA
TGTTTGACATCAACAATACATAAGCTTCGGTGTTCAGTGTTTCATCCTTG
ATGGAGGAAAACATAGACAATCTTCTTCTCAAAAGAAGAAGACAGGCTTC
TTTCTTCCGGTAATCAAACACCGAGAGCAATTCACACGGCGCCTTGTTCC
CGCAAGTCGTTGGTTATACAGAACACTACCTCTTTGAATGGGTGGCGGGC
GACGCAAGTTTCGACACTGCCGTTTGGGCAGCTCGTTTGATGATGCAGAG
CATTTGCTTGGACTGGCACAAGGTGTATCTTCTTCTAAAGGGAACATCTT
CAAGGTTCGTGATGGAAACTTTGCTGAACAACAGTTGGAACTTTGCGTCG
CCCGCACACAGCTTATGAAACGCGTGATCGAAGAAACCGAAGAAAATGGC
ATATCGTCTGGCGAGGAAATGGATTCAAACAACTTTTTCGTGAGTGATCC
TTTGCTGCCAAGATGTCGTCACAACCCATTACATGCAGTCCCGCTTCGAA
ATCTAAAGAAACACGAAGTAAGTCAGACTGCATATACAATAGCATAAACC
CATAACACATGTTCAAAACACTGACGTTTGTCATTGTACTGGAAGCTTTC
TTGTCCGTCGAATCCAGAGAAACGAAGGCGCGCCAAGGAAGAGGAGTTTC
AGTACTCGTACATGGCACCGGCTGCATGA
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Coding sequence (CDS) from alignment at tig00000868_pilon:90828..94956+

>Ggra1065.t1 ID=Ggra1065.t1|Name=Ggra1065.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1101bp|location=Sequence derived from alignment at tig00000868_pilon:90828..94956+ (Gracilaria gracilis GNS1m male)
ATGGTCTCTCTCAAATTGCAGAAGAGGCTTGCCGCCTCCGTGCTCGGATG
CGGTAAGAACAAGGTATGGCTTGATCCCAACGAAATTCAGGAGATCGCCA
TCGCCAACTCCAGACAAAATATTCGAAAGCTGGTGTCTGACGGTCTTGTC
ATCAAGAAGCCCGTCACCGTCCACTCTCGCGCCCGAGTTCGCAAGCTCCA
CGCTGCGAAGAGCAAGGGGCGACACTGCGGCTACGGAAAGCGTCTCGGTA
CGCGCGATGCCCGTCTTCCGCAAAAGGTGTTGTGGATGAGGCGTCAGCGT
GTGCTCCGTAATCTTCTCCGCAAGTACCGCGAGGCCAAGAAGATCGATAG
GTATCTCTATCATGAGTTGTATCTTAGATGCAAGGGTAATGTGTTCAAGA
ACAGAAGAGTGCTCATGGAGTCTATCCACAAGGCCAAGGCTGAGAAGGCT
CGTTCCAAGGCTATTGCTGAGCAGTTCGAAGCGCGTCGTCTTAAGAATCG
TGCTGCTAGGGAGCGTAAGGCTGCCCGATTGGAGGAGCGTCGTAAGCAAG
AAGGTGTTGCCCGTGTTGCTACTTCAATTCGATCAGCCTTGAAACAAGTA
TTTAGAGCTGCGGGTCATCTTCATAGCGCCATCTCTCCAATGGAGCAGGG
CTTCGGTTTAGGTGCCCGCGCAATGATTTTGCTTCTGTCAGTTGCAGGGC
GTAATCAACTTTTGGATCCAAGATACCAACGCTCGTTTGATGATGCAGAG
CATTTGCTTGGACTGGCACAAGGTGTATCTTCTTCTAAAGGGAACATCTT
CAAGGTTCGTGATGGAAACTTTGCTGAACAACAGTTGGAACTTTGCGTCG
CCCGCACACAGCTTATGAAACGCGTGATCGAAGAAACCGAAGAAAATGGC
ATATCGTCTGGCGAGGAAATGGATTCAAACAACTTTTTCGTGAGTGATCC
TTTGCTGCCAAGATGTCGTCACAACCCATTACATGCAGTCCCGCTTCGAA
ATCTAAAGAAACACGAACTTTCTTGTCCGTCGAATCCAGAGAAACGAAGG
CGCGCCAAGGAAGAGGAGTTTCAGTACTCGTACATGGCACCGGCTGCATG
A
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