Ggra10648.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra10648.t1
Unique NameGgra10648.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length217
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000095_piloncontigtig00000095_pilon:130297..131091 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog329726.AM1_0173
PFAMsHemolysinCabind
Max annot lvl1117|Cyanobacteria
Evalue2.93e-25
EggNOG OGsCOG2931@1|root,COG2931@2|Bacteria,1G449@1117|Cyanobacteria
DescriptionHaemolysin-type calcium-binding repeat (2 copies)
COG categoryQ
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra10648Ggra10648Gracilaria gracilis GNS1m malegenetig00000095_pilon 130297..131091 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10648.t1Ggra10648.t1Gracilaria gracilis GNS1m malepolypeptidetig00000095_pilon 130297..131091 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10648.t1.stop1Ggra10648.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000095_pilon 130297..130299 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10648.t1.CDS1Ggra10648.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000095_pilon 130297..130640 -
Ggra10648.t1.CDS2Ggra10648.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000095_pilon 130785..131091 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10648.t1.exon1Ggra10648.t1.exon1Gracilaria gracilis GNS1m maleexontig00000095_pilon 130297..130640 -
Ggra10648.t1.exon2Ggra10648.t1.exon2Gracilaria gracilis GNS1m maleexontig00000095_pilon 130785..131091 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10648.t1.intron1Ggra10648.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000095_pilon 130641..130784 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10648.t1.start1Ggra10648.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000095_pilon 131089..131091 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra10648.t1 ID=Ggra10648.t1|Name=Ggra10648.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=217bp
MKSTIRITFLLALLTCAFAFNKRCPEYHTKFLTHTASNADGLNPVVEKYK
RLLGGEDNGNNPGPLPSGQRSINWDAGVVPFNMPGDFFNTVVTRGAVFRT
RGAKFQIPATHDAARVTGFGAVFTDVDLPHRTKMVYFDENGCRIAKVEVP
PKNKGLSFAGLVVVDPHNPDKTLPVISKVKIQLGNVSIRGFFRHTVRRFF
KDTVVMDDLFYGEPMH*
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spliced messenger RNA

>Ggra10648.t1 ID=Ggra10648.t1|Name=Ggra10648.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=651bp|location=Sequence derived from alignment at tig00000095_pilon:130297..131091- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAGTCGACTATTCGTATTACCTTCCTCCTGGCCCTTCTGACCTGTGC
TTTTGCTTTCAACAAGCGTTGCCCAGAGTATCATACGAAGTTCCTTACTC
ATACTGCAAGTAATGCTGATGGCCTAAACCCCGTCGTCGAAAAATACAAG
CGCCTCCTGGGTGGAGAGGACAACGGAAACAATCCAGGCCCCCTTCCCTC
TGGTCAGCGATCTATCAACTGGGATGCTGGTGTTGTTCCGTTCAACATGC
CCGGCGACTTCTTTAACACAGTCGTCACCCGTGGTGCCGTGTTCCGTACC
CGTGGAGCGAAGTTCCAGATACCAGCCACTCACGATGCAGCAAGAGTGAC
CGGCTTCGGAGCAGTCTTCACTGATGTCGATCTTCCGCATCGTACCAAAA
TGGTTTATTTTGATGAAAACGGGTGTCGCATTGCAAAGGTTGAAGTGCCG
CCAAAAAACAAGGGGTTGAGCTTCGCTGGATTGGTCGTGGTTGACCCACA
CAACCCGGACAAGACGCTGCCTGTTATCTCTAAGGTGAAAATCCAACTTG
GAAACGTATCGATTCGTGGATTCTTCCGTCACACCGTTCGTCGCTTCTTT
AAGGATACGGTTGTGATGGATGATCTGTTCTACGGGGAGCCAATGCACTA
A
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protein sequence of Ggra10648.t1

>Ggra10648.t1 ID=Ggra10648.t1|Name=Ggra10648.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=217bp
MKSTIRITFLLALLTCAFAFNKRCPEYHTKFLTHTASNADGLNPVVEKYK
RLLGGEDNGNNPGPLPSGQRSINWDAGVVPFNMPGDFFNTVVTRGAVFRT
RGAKFQIPATHDAARVTGFGAVFTDVDLPHRTKMVYFDENGCRIAKVEVP
PKNKGLSFAGLVVVDPHNPDKTLPVISKVKIQLGNVSIRGFFRHTVRRFF
KDTVVMDDLFYGEPMH*
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mRNA from alignment at tig00000095_pilon:130297..131091-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra10648.t1 ID=Ggra10648.t1|Name=Ggra10648.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=795bp|location=Sequence derived from alignment at tig00000095_pilon:130297..131091- (Gracilaria gracilis GNS1m male)
ATGAAGTCGACTATTCGTATTACCTTCCTCCTGGCCCTTCTGACCTGTGC
TTTTGCTTTCAACAAGCGTTGCCCAGAGTATCATACGAAGTTCCTTACTC
ATACTGCAAGTAATGCTGATGGCCTAAACCCCGTCGTCGAAAAATACAAG
CGCCTCCTGGGTGGAGAGGACAACGGAAACAATCCAGGCCCCCTTCCCTC
TGGTCAGCGATCTATCAACTGGGATGCTGGTGTTGTTCCGTTCAACATGC
CCGGCGACTTCTTTAACACAGTCGTCACCCGTGGTGCCGTGTTCCGTACC
CGTGGAGGTAAATTCGCCGTTTCCAACCCCGCTGCCCCACCACCAGAGGA
TGATCGCTTCTCGTCGTTGCTCCCCTCCTTTGTGACAAAACAGTTCAGTC
GGTTCTCACTTGAGCGCCTCTTCACCCCCGTTTTATCAAACCGTTTCACA
GCGAAGTTCCAGATACCAGCCACTCACGATGCAGCAAGAGTGACCGGCTT
CGGAGCAGTCTTCACTGATGTCGATCTTCCGCATCGTACCAAAATGGTTT
ATTTTGATGAAAACGGGTGTCGCATTGCAAAGGTTGAAGTGCCGCCAAAA
AACAAGGGGTTGAGCTTCGCTGGATTGGTCGTGGTTGACCCACACAACCC
GGACAAGACGCTGCCTGTTATCTCTAAGGTGAAAATCCAACTTGGAAACG
TATCGATTCGTGGATTCTTCCGTCACACCGTTCGTCGCTTCTTTAAGGAT
ACGGTTGTGATGGATGATCTGTTCTACGGGGAGCCAATGCACTAA
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Coding sequence (CDS) from alignment at tig00000095_pilon:130297..131091-

>Ggra10648.t1 ID=Ggra10648.t1|Name=Ggra10648.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=651bp|location=Sequence derived from alignment at tig00000095_pilon:130297..131091- (Gracilaria gracilis GNS1m male)
ATGAAGTCGACTATTCGTATTACCTTCCTCCTGGCCCTTCTGACCTGTGC
TTTTGCTTTCAACAAGCGTTGCCCAGAGTATCATACGAAGTTCCTTACTC
ATACTGCAAGTAATGCTGATGGCCTAAACCCCGTCGTCGAAAAATACAAG
CGCCTCCTGGGTGGAGAGGACAACGGAAACAATCCAGGCCCCCTTCCCTC
TGGTCAGCGATCTATCAACTGGGATGCTGGTGTTGTTCCGTTCAACATGC
CCGGCGACTTCTTTAACACAGTCGTCACCCGTGGTGCCGTGTTCCGTACC
CGTGGAGCGAAGTTCCAGATACCAGCCACTCACGATGCAGCAAGAGTGAC
CGGCTTCGGAGCAGTCTTCACTGATGTCGATCTTCCGCATCGTACCAAAA
TGGTTTATTTTGATGAAAACGGGTGTCGCATTGCAAAGGTTGAAGTGCCG
CCAAAAAACAAGGGGTTGAGCTTCGCTGGATTGGTCGTGGTTGACCCACA
CAACCCGGACAAGACGCTGCCTGTTATCTCTAAGGTGAAAATCCAACTTG
GAAACGTATCGATTCGTGGATTCTTCCGTCACACCGTTCGTCGCTTCTTT
AAGGATACGGTTGTGATGGATGATCTGTTCTACGGGGAGCCAATGCACTA
A
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