Ggra10644.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra10644.t1
Unique Name	Ggra10644.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	435

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000095_pilon	contig	tig00000095_pilon:19663..20967 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	243090.RB11150
PFAMs	Oxidored_FMN
Max annot lvl	203682\|Planctomycetes
KEGG rclass	RC00250
KEGG ko	ko:K10680
KEGG Reaction	R08014,R08017,R08042
KEGG Pathway	ko00633,ko01120,map00633,map01120
Evalue	9.45e-128
EggNOG OGs	COG1902@1\|root,COG1902@2\|Bacteria,2IYAT@203682\|Planctomycetes
Description	COG1902 NADH flavin oxidoreductases, Old Yellow Enzyme family
COG category	C
BRITE	ko00000,ko00001,ko01000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra10644	Ggra10644	Gracilaria gracilis GNS1m male	gene	tig00000095_pilon 19663..20967 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra10644.t1.start1	Ggra10644.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000095_pilon 19663..19665 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra10644.t1.CDS1	Ggra10644.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000095_pilon 19663..20967 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra10644.t1.exon1	Ggra10644.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000095_pilon 19663..20967 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra10644.t1.stop1	Ggra10644.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000095_pilon 20965..20967 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra10644.t1	Ggra10644.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000095_pilon 19663..20967 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000095_pilon:19663..20967+
coding sequence from alignment at tig00000095_pilon:19663..20967+

mRNA sequence

>Ggra10644.t1 ID=Ggra10644.t1|Name=Ggra10644.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=435bp
MFEPHNFLIARKTWWHFPYKDVATNFALIQATSLLHPFSPIELIWSPSST
TVYTMDKFPNLLSPLSIGSLTLKNRICMAPMSRGRAGPKLSANELVAEYY
AARASSGLIISEGSHTSILGRGWYHTPEVWTPANAKGWKIVTDRVHENDG
VMFCQLWHAGRTSHSAFRDGEQGYEGSLKMSVAPSAIKKKSESGKQSHTP
RGEVDVETPRAMTVAEIEQLPEEFRNAAQTAKDGGFDGVEIHCASGFLLD
TFLQSSSNSRTDKYGGSLENRFRIVDMVLKAVFTVYDPSRVGVRISPNGA
YNGMGSEDFRESFIYYARRFAEYKLAYLHIMIGMDFGFHKMGPAMSIADF
REVYQGVIIANMGYTADSGEKEIADGNADLISFGRPFLRNPDLVERISEG
KELRPVLPHQYWYSSVEIPLTTEGYTDLSIVQES*

spliced messenger RNA

>Ggra10644.t1 ID=Ggra10644.t1|Name=Ggra10644.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1305bp|location=Sequence derived from alignment at tig00000095_pilon:19663..20967+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTTGAGCCTCACAATTTCCTAATTGCCCGTAAAACTTGGTGGCACTT
CCCCTATAAAGACGTCGCTACCAACTTTGCGTTGATTCAAGCCACGTCTC
TACTTCATCCATTCTCCCCTATCGAATTGATTTGGTCCCCTTCCTCCACA
ACTGTGTACACTATGGACAAGTTTCCCAACCTTCTGTCACCGCTGTCCAT
TGGCTCGCTCACCCTCAAGAACCGCATCTGCATGGCTCCCATGTCCCGCG
GGCGCGCTGGTCCAAAGCTTTCCGCCAACGAGCTTGTCGCCGAGTATTAT
GCCGCACGTGCCTCCTCCGGTCTCATTATAAGCGAAGGCTCGCACACCTC
CATTCTTGGTCGCGGATGGTATCACACGCCCGAAGTATGGACCCCTGCAA
ACGCAAAAGGATGGAAAATAGTCACTGATCGTGTGCATGAGAACGACGGT
GTCATGTTTTGTCAATTGTGGCATGCTGGACGAACTAGTCACTCCGCGTT
TCGCGATGGAGAACAAGGATACGAGGGTAGCCTCAAAATGTCGGTGGCAC
CTTCTGCGATTAAGAAGAAGTCAGAAAGTGGAAAGCAGAGCCATACTCCG
AGGGGTGAGGTTGATGTGGAGACTCCTCGCGCAATGACGGTAGCAGAGAT
TGAGCAGTTGCCCGAAGAATTTCGAAACGCTGCACAGACGGCTAAGGACG
GCGGCTTCGATGGTGTGGAAATTCATTGCGCCTCAGGATTTCTTTTGGAC
ACTTTTCTGCAGAGCAGTTCAAATTCACGCACGGACAAGTATGGAGGCTC
TCTAGAGAATCGATTCCGCATTGTAGACATGGTACTGAAGGCGGTTTTCA
CCGTGTACGACCCTTCCAGAGTTGGGGTCCGAATCTCCCCTAATGGAGCT
TACAATGGAATGGGTAGTGAAGATTTTCGTGAATCATTCATTTACTATGC
ACGTCGTTTTGCAGAGTACAAATTGGCATACTTGCATATCATGATCGGGA
TGGATTTCGGCTTCCATAAAATGGGCCCTGCGATGAGCATTGCTGACTTT
AGAGAAGTATACCAGGGAGTGATTATTGCCAACATGGGATACACTGCCGA
TTCAGGTGAGAAGGAGATTGCTGATGGCAATGCTGATCTTATTTCATTTG
GAAGACCGTTTCTGCGCAATCCAGATCTTGTAGAGCGGATTTCGGAAGGG
AAGGAGCTAAGGCCAGTACTACCCCATCAATACTGGTATTCTTCGGTTGA
AATTCCTCTCACCACTGAGGGGTACACCGATCTGAGTATTGTTCAAGAAT
CCTAG

protein sequence of Ggra10644.t1

>Ggra10644.t1 ID=Ggra10644.t1|Name=Ggra10644.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=435bp
MFEPHNFLIARKTWWHFPYKDVATNFALIQATSLLHPFSPIELIWSPSST
TVYTMDKFPNLLSPLSIGSLTLKNRICMAPMSRGRAGPKLSANELVAEYY
AARASSGLIISEGSHTSILGRGWYHTPEVWTPANAKGWKIVTDRVHENDG
VMFCQLWHAGRTSHSAFRDGEQGYEGSLKMSVAPSAIKKKSESGKQSHTP
RGEVDVETPRAMTVAEIEQLPEEFRNAAQTAKDGGFDGVEIHCASGFLLD
TFLQSSSNSRTDKYGGSLENRFRIVDMVLKAVFTVYDPSRVGVRISPNGA
YNGMGSEDFRESFIYYARRFAEYKLAYLHIMIGMDFGFHKMGPAMSIADF
REVYQGVIIANMGYTADSGEKEIADGNADLISFGRPFLRNPDLVERISEG
KELRPVLPHQYWYSSVEIPLTTEGYTDLSIVQES*

mRNA from alignment at tig00000095_pilon:19663..20967+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra10644.t1 ID=Ggra10644.t1|Name=Ggra10644.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1305bp|location=Sequence derived from alignment at tig00000095_pilon:19663..20967+ (Gracilaria gracilis GNS1m male)
ATGTTTGAGCCTCACAATTTCCTAATTGCCCGTAAAACTTGGTGGCACTT
CCCCTATAAAGACGTCGCTACCAACTTTGCGTTGATTCAAGCCACGTCTC
TACTTCATCCATTCTCCCCTATCGAATTGATTTGGTCCCCTTCCTCCACA
ACTGTGTACACTATGGACAAGTTTCCCAACCTTCTGTCACCGCTGTCCAT
TGGCTCGCTCACCCTCAAGAACCGCATCTGCATGGCTCCCATGTCCCGCG
GGCGCGCTGGTCCAAAGCTTTCCGCCAACGAGCTTGTCGCCGAGTATTAT
GCCGCACGTGCCTCCTCCGGTCTCATTATAAGCGAAGGCTCGCACACCTC
CATTCTTGGTCGCGGATGGTATCACACGCCCGAAGTATGGACCCCTGCAA
ACGCAAAAGGATGGAAAATAGTCACTGATCGTGTGCATGAGAACGACGGT
GTCATGTTTTGTCAATTGTGGCATGCTGGACGAACTAGTCACTCCGCGTT
TCGCGATGGAGAACAAGGATACGAGGGTAGCCTCAAAATGTCGGTGGCAC
CTTCTGCGATTAAGAAGAAGTCAGAAAGTGGAAAGCAGAGCCATACTCCG
AGGGGTGAGGTTGATGTGGAGACTCCTCGCGCAATGACGGTAGCAGAGAT
TGAGCAGTTGCCCGAAGAATTTCGAAACGCTGCACAGACGGCTAAGGACG
GCGGCTTCGATGGTGTGGAAATTCATTGCGCCTCAGGATTTCTTTTGGAC
ACTTTTCTGCAGAGCAGTTCAAATTCACGCACGGACAAGTATGGAGGCTC
TCTAGAGAATCGATTCCGCATTGTAGACATGGTACTGAAGGCGGTTTTCA
CCGTGTACGACCCTTCCAGAGTTGGGGTCCGAATCTCCCCTAATGGAGCT
TACAATGGAATGGGTAGTGAAGATTTTCGTGAATCATTCATTTACTATGC
ACGTCGTTTTGCAGAGTACAAATTGGCATACTTGCATATCATGATCGGGA
TGGATTTCGGCTTCCATAAAATGGGCCCTGCGATGAGCATTGCTGACTTT
AGAGAAGTATACCAGGGAGTGATTATTGCCAACATGGGATACACTGCCGA
TTCAGGTGAGAAGGAGATTGCTGATGGCAATGCTGATCTTATTTCATTTG
GAAGACCGTTTCTGCGCAATCCAGATCTTGTAGAGCGGATTTCGGAAGGG
AAGGAGCTAAGGCCAGTACTACCCCATCAATACTGGTATTCTTCGGTTGA
AATTCCTCTCACCACTGAGGGGTACACCGATCTGAGTATTGTTCAAGAAT
CCTAG

Coding sequence (CDS) from alignment at tig00000095_pilon:19663..20967+

>Ggra10644.t1 ID=Ggra10644.t1|Name=Ggra10644.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1305bp|location=Sequence derived from alignment at tig00000095_pilon:19663..20967+ (Gracilaria gracilis GNS1m male)
ATGTTTGAGCCTCACAATTTCCTAATTGCCCGTAAAACTTGGTGGCACTT
CCCCTATAAAGACGTCGCTACCAACTTTGCGTTGATTCAAGCCACGTCTC
TACTTCATCCATTCTCCCCTATCGAATTGATTTGGTCCCCTTCCTCCACA
ACTGTGTACACTATGGACAAGTTTCCCAACCTTCTGTCACCGCTGTCCAT
TGGCTCGCTCACCCTCAAGAACCGCATCTGCATGGCTCCCATGTCCCGCG
GGCGCGCTGGTCCAAAGCTTTCCGCCAACGAGCTTGTCGCCGAGTATTAT
GCCGCACGTGCCTCCTCCGGTCTCATTATAAGCGAAGGCTCGCACACCTC
CATTCTTGGTCGCGGATGGTATCACACGCCCGAAGTATGGACCCCTGCAA
ACGCAAAAGGATGGAAAATAGTCACTGATCGTGTGCATGAGAACGACGGT
GTCATGTTTTGTCAATTGTGGCATGCTGGACGAACTAGTCACTCCGCGTT
TCGCGATGGAGAACAAGGATACGAGGGTAGCCTCAAAATGTCGGTGGCAC
CTTCTGCGATTAAGAAGAAGTCAGAAAGTGGAAAGCAGAGCCATACTCCG
AGGGGTGAGGTTGATGTGGAGACTCCTCGCGCAATGACGGTAGCAGAGAT
TGAGCAGTTGCCCGAAGAATTTCGAAACGCTGCACAGACGGCTAAGGACG
GCGGCTTCGATGGTGTGGAAATTCATTGCGCCTCAGGATTTCTTTTGGAC
ACTTTTCTGCAGAGCAGTTCAAATTCACGCACGGACAAGTATGGAGGCTC
TCTAGAGAATCGATTCCGCATTGTAGACATGGTACTGAAGGCGGTTTTCA
CCGTGTACGACCCTTCCAGAGTTGGGGTCCGAATCTCCCCTAATGGAGCT
TACAATGGAATGGGTAGTGAAGATTTTCGTGAATCATTCATTTACTATGC
ACGTCGTTTTGCAGAGTACAAATTGGCATACTTGCATATCATGATCGGGA
TGGATTTCGGCTTCCATAAAATGGGCCCTGCGATGAGCATTGCTGACTTT
AGAGAAGTATACCAGGGAGTGATTATTGCCAACATGGGATACACTGCCGA
TTCAGGTGAGAAGGAGATTGCTGATGGCAATGCTGATCTTATTTCATTTG
GAAGACCGTTTCTGCGCAATCCAGATCTTGTAGAGCGGATTTCGGAAGGG
AAGGAGCTAAGGCCAGTACTACCCCATCAATACTGGTATTCTTCGGTTGA
AATTCCTCTCACCACTGAGGGGTACACCGATCTGAGTATTGTTCAAGAAT
CCTAG