Ggra1064.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra1064.t1
Unique NameGgra1064.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length307
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000868_piloncontigtig00000868_pilon:88895..89815 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog655981.L8FZP6
PFAMsIBR
Max annot lvl4751|Fungi
Evalue1.19e-15
EggNOG OGsKOG1812@1|root,KOG1812@2759|Eukaryota,39TSR@33154|Opisthokonta,3NVJG@4751|Fungi,3QM6B@4890|Ascomycota,20XGN@147548|Leotiomycetes
Descriptionibr finger
COG categoryO
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1064Ggra1064Gracilaria gracilis GNS1m malegenetig00000868_pilon 88895..89815 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1064.t1.stop1Ggra1064.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000868_pilon 88895..88897 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1064.t1.CDS1Ggra1064.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000868_pilon 88895..89815 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1064.t1.exon1Ggra1064.t1.exon1Gracilaria gracilis GNS1m maleexontig00000868_pilon 88895..89815 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1064.t1.start1Ggra1064.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000868_pilon 89813..89815 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1064.t1Ggra1064.t1Gracilaria gracilis GNS1m malepolypeptidetig00000868_pilon 88895..89815 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra1064.t1 ID=Ggra1064.t1|Name=Ggra1064.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=307bp
MGRKRFYDAVRDLIRDEHDPPEQPRSRRRLSISSLLIAPQTCAACWDPVP
LEGSVFLCNSCCGALCPPCLTQYARSAVADRQLLPLRCAEQDCRAPVPLS
ALNGLLQTDQIAKLARFQCELVRKPAKSLPPVSPLHVERDSEEALHELIR
DQGWRRCPDCGTGIEKTVGCPHVVCVCGGELCYSCGERWGNCGITCPRRR
AIPAHHDALLGLLPGRFEELRDEVWERMVALLERLREHIERDFPARMQNH
PMVQHDLPSIDSQRFSQTLTHAPNRTNTGIHMRDESQSVKMSLRSLVHPS
LENRLW*
back to top

spliced messenger RNA

>Ggra1064.t1 ID=Ggra1064.t1|Name=Ggra1064.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=921bp|location=Sequence derived from alignment at tig00000868_pilon:88895..89815- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGGAGGAAGAGGTTCTACGATGCCGTTCGTGATCTCATTCGAGACGA
ACACGACCCTCCGGAACAGCCTCGCTCCCGTCGTCGCCTCTCTATTTCGT
CTCTGCTCATCGCCCCTCAAACCTGTGCTGCCTGCTGGGATCCCGTCCCT
CTAGAAGGCTCCGTCTTCCTGTGCAACAGTTGCTGTGGCGCTCTATGTCC
ACCCTGTCTCACTCAGTATGCCCGCTCTGCTGTCGCTGATCGTCAGCTTC
TTCCGCTCCGCTGTGCTGAGCAGGACTGCCGTGCACCGGTTCCGCTTTCG
GCACTAAACGGTCTTCTCCAAACCGATCAGATTGCGAAGCTTGCTCGTTT
CCAGTGCGAGCTCGTGCGCAAGCCCGCCAAGAGTTTACCTCCGGTCTCTC
CGCTTCATGTCGAGCGGGACAGTGAAGAAGCCTTGCATGAATTGATACGC
GACCAGGGCTGGCGTCGTTGTCCCGACTGCGGCACTGGCATTGAAAAGAC
TGTTGGTTGTCCGCATGTCGTGTGTGTCTGTGGTGGCGAATTATGCTATT
CATGTGGCGAGAGATGGGGTAACTGTGGCATAACTTGTCCACGCCGCCGA
GCGATACCAGCACATCATGATGCGCTGCTCGGTTTATTACCTGGTAGGTT
TGAGGAATTGAGAGATGAAGTTTGGGAACGTATGGTAGCCTTGCTTGAAA
GGCTTCGGGAACATATCGAAAGAGACTTCCCAGCGCGAATGCAAAACCAC
CCCATGGTTCAGCACGACTTGCCTTCCATCGATTCACAACGATTTTCACA
AACTCTTACTCATGCACCTAACAGGACGAACACCGGTATCCATATGCGTG
ATGAGTCACAGTCCGTCAAGATGAGTTTAAGGTCTTTGGTACATCCAAGT
TTAGAGAACAGGCTATGGTGA
back to top

protein sequence of Ggra1064.t1

>Ggra1064.t1 ID=Ggra1064.t1|Name=Ggra1064.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=307bp
MGRKRFYDAVRDLIRDEHDPPEQPRSRRRLSISSLLIAPQTCAACWDPVP
LEGSVFLCNSCCGALCPPCLTQYARSAVADRQLLPLRCAEQDCRAPVPLS
ALNGLLQTDQIAKLARFQCELVRKPAKSLPPVSPLHVERDSEEALHELIR
DQGWRRCPDCGTGIEKTVGCPHVVCVCGGELCYSCGERWGNCGITCPRRR
AIPAHHDALLGLLPGRFEELRDEVWERMVALLERLREHIERDFPARMQNH
PMVQHDLPSIDSQRFSQTLTHAPNRTNTGIHMRDESQSVKMSLRSLVHPS
LENRLW*
back to top

mRNA from alignment at tig00000868_pilon:88895..89815-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra1064.t1 ID=Ggra1064.t1|Name=Ggra1064.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=921bp|location=Sequence derived from alignment at tig00000868_pilon:88895..89815- (Gracilaria gracilis GNS1m male)
ATGGGGAGGAAGAGGTTCTACGATGCCGTTCGTGATCTCATTCGAGACGA
ACACGACCCTCCGGAACAGCCTCGCTCCCGTCGTCGCCTCTCTATTTCGT
CTCTGCTCATCGCCCCTCAAACCTGTGCTGCCTGCTGGGATCCCGTCCCT
CTAGAAGGCTCCGTCTTCCTGTGCAACAGTTGCTGTGGCGCTCTATGTCC
ACCCTGTCTCACTCAGTATGCCCGCTCTGCTGTCGCTGATCGTCAGCTTC
TTCCGCTCCGCTGTGCTGAGCAGGACTGCCGTGCACCGGTTCCGCTTTCG
GCACTAAACGGTCTTCTCCAAACCGATCAGATTGCGAAGCTTGCTCGTTT
CCAGTGCGAGCTCGTGCGCAAGCCCGCCAAGAGTTTACCTCCGGTCTCTC
CGCTTCATGTCGAGCGGGACAGTGAAGAAGCCTTGCATGAATTGATACGC
GACCAGGGCTGGCGTCGTTGTCCCGACTGCGGCACTGGCATTGAAAAGAC
TGTTGGTTGTCCGCATGTCGTGTGTGTCTGTGGTGGCGAATTATGCTATT
CATGTGGCGAGAGATGGGGTAACTGTGGCATAACTTGTCCACGCCGCCGA
GCGATACCAGCACATCATGATGCGCTGCTCGGTTTATTACCTGGTAGGTT
TGAGGAATTGAGAGATGAAGTTTGGGAACGTATGGTAGCCTTGCTTGAAA
GGCTTCGGGAACATATCGAAAGAGACTTCCCAGCGCGAATGCAAAACCAC
CCCATGGTTCAGCACGACTTGCCTTCCATCGATTCACAACGATTTTCACA
AACTCTTACTCATGCACCTAACAGGACGAACACCGGTATCCATATGCGTG
ATGAGTCACAGTCCGTCAAGATGAGTTTAAGGTCTTTGGTACATCCAAGT
TTAGAGAACAGGCTATGGTGA
back to top

Coding sequence (CDS) from alignment at tig00000868_pilon:88895..89815-

>Ggra1064.t1 ID=Ggra1064.t1|Name=Ggra1064.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=921bp|location=Sequence derived from alignment at tig00000868_pilon:88895..89815- (Gracilaria gracilis GNS1m male)
ATGGGGAGGAAGAGGTTCTACGATGCCGTTCGTGATCTCATTCGAGACGA
ACACGACCCTCCGGAACAGCCTCGCTCCCGTCGTCGCCTCTCTATTTCGT
CTCTGCTCATCGCCCCTCAAACCTGTGCTGCCTGCTGGGATCCCGTCCCT
CTAGAAGGCTCCGTCTTCCTGTGCAACAGTTGCTGTGGCGCTCTATGTCC
ACCCTGTCTCACTCAGTATGCCCGCTCTGCTGTCGCTGATCGTCAGCTTC
TTCCGCTCCGCTGTGCTGAGCAGGACTGCCGTGCACCGGTTCCGCTTTCG
GCACTAAACGGTCTTCTCCAAACCGATCAGATTGCGAAGCTTGCTCGTTT
CCAGTGCGAGCTCGTGCGCAAGCCCGCCAAGAGTTTACCTCCGGTCTCTC
CGCTTCATGTCGAGCGGGACAGTGAAGAAGCCTTGCATGAATTGATACGC
GACCAGGGCTGGCGTCGTTGTCCCGACTGCGGCACTGGCATTGAAAAGAC
TGTTGGTTGTCCGCATGTCGTGTGTGTCTGTGGTGGCGAATTATGCTATT
CATGTGGCGAGAGATGGGGTAACTGTGGCATAACTTGTCCACGCCGCCGA
GCGATACCAGCACATCATGATGCGCTGCTCGGTTTATTACCTGGTAGGTT
TGAGGAATTGAGAGATGAAGTTTGGGAACGTATGGTAGCCTTGCTTGAAA
GGCTTCGGGAACATATCGAAAGAGACTTCCCAGCGCGAATGCAAAACCAC
CCCATGGTTCAGCACGACTTGCCTTCCATCGATTCACAACGATTTTCACA
AACTCTTACTCATGCACCTAACAGGACGAACACCGGTATCCATATGCGTG
ATGAGTCACAGTCCGTCAAGATGAGTTTAAGGTCTTTGGTACATCCAAGT
TTAGAGAACAGGCTATGGTGA
back to top