Ggra10637.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra10637.t1
Unique NameGgra10637.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length242
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000904_piloncontigtig00000904_pilon:463763..464488 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog215358.XP_010736366.1
Preferred nameGLTP
PFAMsGLTP
Max annot lvl33208|Metazoa
KEGG koko:K08051
GOsGO:0003674,GO:0005215,GO:0005319,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006629,GO:0006643,GO:0006664,GO:0006665,GO:0006687,GO:0006807,GO:0006810,GO:0006869,GO:0008150,GO:0008152,GO:0008289,GO:0009987,GO:0010876,GO:0016020,GO:0016043,GO:0017089,GO:0033036,GO:0042802,GO:0044237,GO:0044238,GO:0044255,GO:0044424,GO:0044444,GO:0044464,GO:0046836,GO:0051179,GO:0051234,GO:0051861,GO:0061024,GO:0071702,GO:0071704,GO:0071840,GO:0097367,GO:0120009,GO:0120013,GO:1901135,GO:1901264,GO:1901564,GO:1903509
Evalue4.73e-12
EggNOG OGsKOG3221@1|root,KOG3221@2759|Eukaryota,399V8@33154|Opisthokonta,3BERF@33208|Metazoa,3CV85@33213|Bilateria,486Q2@7711|Chordata,495MJ@7742|Vertebrata,49TZE@7898|Actinopterygii
DescriptionGlycolipid transfer protein b
COG categoryG
BRITEko00000,ko04131
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra10637Ggra10637Gracilaria gracilis GNS1m malegenetig00000904_pilon 463763..464488 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10637.t1.start1Ggra10637.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000904_pilon 463763..463765 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10637.t1.CDS1Ggra10637.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000904_pilon 463763..464488 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10637.t1.exon1Ggra10637.t1.exon1Gracilaria gracilis GNS1m maleexontig00000904_pilon 463763..464488 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10637.t1.stop1Ggra10637.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000904_pilon 464486..464488 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10637.t1Ggra10637.t1Gracilaria gracilis GNS1m malepolypeptidetig00000904_pilon 463763..464488 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra10637.t1 ID=Ggra10637.t1|Name=Ggra10637.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=242bp
MSTHMTRNKSLGGSTVTVVDSDAIHTPFSCITQPFRRAIHDADSNNLCFP
KGDINVELFNNAISGFLTIFDALGSPIITDIVRRDFRGKTNGLRNSSRRL
RANTLRQLVGNEIKSPPRFWAPSGIECLLWCQRILNFIEQLVQHLVDDDA
MELKDACIKSYRDTLALRHPNVTKAIFERALQLVPPRREFLSNLCGGEQE
ASEQDVALCMVGMKHFLRAVRPHISALQTLFEIEQVDEGRR*
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spliced messenger RNA

>Ggra10637.t1 ID=Ggra10637.t1|Name=Ggra10637.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=726bp|location=Sequence derived from alignment at tig00000904_pilon:463763..464488+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGCACCCACATGACGCGCAACAAGTCGCTCGGCGGTAGCACCGTCAC
CGTGGTGGATAGCGATGCCATTCACACGCCCTTCTCGTGCATCACGCAGC
CTTTCAGACGTGCCATACATGACGCCGACAGCAACAATCTCTGTTTTCCG
AAGGGCGATATCAACGTCGAGTTGTTCAATAACGCCATCTCTGGCTTTCT
CACCATCTTCGACGCGCTGGGGTCACCCATCATCACCGACATTGTGCGCA
GAGACTTTCGTGGAAAGACCAACGGTCTGCGAAACTCGTCGCGTCGACTG
CGAGCAAACACGCTGCGTCAGTTGGTGGGCAACGAAATCAAGTCGCCGCC
AAGGTTTTGGGCGCCGTCAGGCATCGAGTGTCTGCTGTGGTGTCAGAGGA
TTTTGAACTTCATTGAGCAACTTGTACAACACCTAGTGGATGATGACGCC
ATGGAACTGAAGGACGCGTGCATCAAGTCGTACCGAGATACGTTGGCATT
ACGACACCCAAATGTGACAAAGGCTATCTTTGAACGCGCGTTGCAGCTGG
TACCGCCGCGACGTGAATTTTTGTCCAACCTGTGCGGTGGCGAGCAAGAA
GCCAGTGAACAGGACGTGGCGCTGTGTATGGTGGGCATGAAGCACTTTTT
GAGAGCGGTTCGTCCGCACATCAGCGCGCTTCAGACGCTGTTTGAAATCG
AGCAAGTGGATGAGGGGCGTCGATGA
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protein sequence of Ggra10637.t1

>Ggra10637.t1 ID=Ggra10637.t1|Name=Ggra10637.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=242bp
MSTHMTRNKSLGGSTVTVVDSDAIHTPFSCITQPFRRAIHDADSNNLCFP
KGDINVELFNNAISGFLTIFDALGSPIITDIVRRDFRGKTNGLRNSSRRL
RANTLRQLVGNEIKSPPRFWAPSGIECLLWCQRILNFIEQLVQHLVDDDA
MELKDACIKSYRDTLALRHPNVTKAIFERALQLVPPRREFLSNLCGGEQE
ASEQDVALCMVGMKHFLRAVRPHISALQTLFEIEQVDEGRR*
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mRNA from alignment at tig00000904_pilon:463763..464488+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra10637.t1 ID=Ggra10637.t1|Name=Ggra10637.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=726bp|location=Sequence derived from alignment at tig00000904_pilon:463763..464488+ (Gracilaria gracilis GNS1m male)
ATGAGCACCCACATGACGCGCAACAAGTCGCTCGGCGGTAGCACCGTCAC
CGTGGTGGATAGCGATGCCATTCACACGCCCTTCTCGTGCATCACGCAGC
CTTTCAGACGTGCCATACATGACGCCGACAGCAACAATCTCTGTTTTCCG
AAGGGCGATATCAACGTCGAGTTGTTCAATAACGCCATCTCTGGCTTTCT
CACCATCTTCGACGCGCTGGGGTCACCCATCATCACCGACATTGTGCGCA
GAGACTTTCGTGGAAAGACCAACGGTCTGCGAAACTCGTCGCGTCGACTG
CGAGCAAACACGCTGCGTCAGTTGGTGGGCAACGAAATCAAGTCGCCGCC
AAGGTTTTGGGCGCCGTCAGGCATCGAGTGTCTGCTGTGGTGTCAGAGGA
TTTTGAACTTCATTGAGCAACTTGTACAACACCTAGTGGATGATGACGCC
ATGGAACTGAAGGACGCGTGCATCAAGTCGTACCGAGATACGTTGGCATT
ACGACACCCAAATGTGACAAAGGCTATCTTTGAACGCGCGTTGCAGCTGG
TACCGCCGCGACGTGAATTTTTGTCCAACCTGTGCGGTGGCGAGCAAGAA
GCCAGTGAACAGGACGTGGCGCTGTGTATGGTGGGCATGAAGCACTTTTT
GAGAGCGGTTCGTCCGCACATCAGCGCGCTTCAGACGCTGTTTGAAATCG
AGCAAGTGGATGAGGGGCGTCGATGA
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Coding sequence (CDS) from alignment at tig00000904_pilon:463763..464488+

>Ggra10637.t1 ID=Ggra10637.t1|Name=Ggra10637.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=726bp|location=Sequence derived from alignment at tig00000904_pilon:463763..464488+ (Gracilaria gracilis GNS1m male)
ATGAGCACCCACATGACGCGCAACAAGTCGCTCGGCGGTAGCACCGTCAC
CGTGGTGGATAGCGATGCCATTCACACGCCCTTCTCGTGCATCACGCAGC
CTTTCAGACGTGCCATACATGACGCCGACAGCAACAATCTCTGTTTTCCG
AAGGGCGATATCAACGTCGAGTTGTTCAATAACGCCATCTCTGGCTTTCT
CACCATCTTCGACGCGCTGGGGTCACCCATCATCACCGACATTGTGCGCA
GAGACTTTCGTGGAAAGACCAACGGTCTGCGAAACTCGTCGCGTCGACTG
CGAGCAAACACGCTGCGTCAGTTGGTGGGCAACGAAATCAAGTCGCCGCC
AAGGTTTTGGGCGCCGTCAGGCATCGAGTGTCTGCTGTGGTGTCAGAGGA
TTTTGAACTTCATTGAGCAACTTGTACAACACCTAGTGGATGATGACGCC
ATGGAACTGAAGGACGCGTGCATCAAGTCGTACCGAGATACGTTGGCATT
ACGACACCCAAATGTGACAAAGGCTATCTTTGAACGCGCGTTGCAGCTGG
TACCGCCGCGACGTGAATTTTTGTCCAACCTGTGCGGTGGCGAGCAAGAA
GCCAGTGAACAGGACGTGGCGCTGTGTATGGTGGGCATGAAGCACTTTTT
GAGAGCGGTTCGTCCGCACATCAGCGCGCTTCAGACGCTGTTTGAAATCG
AGCAAGTGGATGAGGGGCGTCGATGA
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