Ggra10635.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra10635.t1
Unique NameGgra10635.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length501
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000904_piloncontigtig00000904_pilon:461175..462677 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog45157.CMN301CT
Preferred namekes1
PFAMsOxysterol_BP
Max annot lvl2759|Eukaryota
KEGG koko:K05012,ko:K20465
KEGG TC2.A.49.1.1,2.A.49.1.2,2.A.49.1.3,2.A.49.2.2,2.A.49.2.3,2.A.49.2.8
GOsGO:0000139,GO:0000322,GO:0000323,GO:0000324,GO:0000329,GO:0003674,GO:0005215,GO:0005319,GO:0005488,GO:0005496,GO:0005543,GO:0005546,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005773,GO:0005774,GO:0005794,GO:0005829,GO:0005933,GO:0005935,GO:0006629,GO:0006643,GO:0006665,GO:0006807,GO:0006810,GO:0006869,GO:0006887,GO:0006892,GO:0006897,GO:0006914,GO:0007163,GO:0008142,GO:0008150,GO:0008152,GO:0008289,GO:0009056,GO:0009893,GO:0009987,GO:0010562,GO:0010876,GO:0010921,GO:0010922,GO:0012505,GO:0015248,GO:0015850,GO:0015918,GO:0016020,GO:0016043,GO:0016192,GO:0016237,GO:0019220,GO:0019222,GO:0019898,GO:0030011,GO:0030427,GO:0031090,GO:0031323,GO:0031325,GO:0031984,GO:0032365,GO:0032934,GO:0032940,GO:0033036,GO:0034727,GO:0035091,GO:0035303,GO:0035306,GO:0035621,GO:0035627,GO:0042886,GO:0043085,GO:0043167,GO:0043168,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044093,GO:0044237,GO:0044238,GO:0044248,GO:0044255,GO:0044422,GO:0044424,GO:0044425,GO:0044431,GO:0044437,GO:0044444,GO:0044446,GO:0044464,GO:0044804,GO:0045937,GO:0046903,GO:0046907,GO:0048193,GO:0048518,GO:0048522,GO:0050789,GO:0050790,GO:0050794,GO:0051174,GO:0051179,GO:0051234,GO:0051336,GO:0051345,GO:0051641,GO:0051649,GO:0061024,GO:0061919,GO:0065007,GO:0065009,GO:0070273,GO:0070300,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0097159,GO:0098588,GO:0098657,GO:0098791,GO:0098805,GO:0098852,GO:0120009,GO:0120011,GO:1901564,GO:1901981,GO:1902936
Evalue8.16e-53
EggNOG OGsKOG2210@1|root,KOG2210@2759|Eukaryota
Descriptionlipid transport
COG categoryP
BRITEko00000,ko04040,ko04131
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra10635Ggra10635Gracilaria gracilis GNS1m malegenetig00000904_pilon 461175..462677 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10635.t1.start1Ggra10635.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000904_pilon 461175..461177 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10635.t1.CDS1Ggra10635.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000904_pilon 461175..462677 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10635.t1.exon1Ggra10635.t1.exon1Gracilaria gracilis GNS1m maleexontig00000904_pilon 461175..462677 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10635.t1.stop1Ggra10635.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000904_pilon 462675..462677 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10635.t1Ggra10635.t1Gracilaria gracilis GNS1m malepolypeptidetig00000904_pilon 461175..462677 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra10635.t1 ID=Ggra10635.t1|Name=Ggra10635.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=501bp
MSSPIISSFTPLEKTDDYRIENASTTGGMLFDDPKEAEMIRRSVQFVLQR
VGSQVLQGNITFSGMSMPVHMNEPRSLLERITDDWAYAPLYLNAAAATKD
PVQRIKLVAAFVVSGLHCIETLAKPFNPILGSTYQATLSDGTPCYIEQTS
HHPPVTHYTIRPEDKSYLLSGFSGVQGGVVWGLDTALSSRRVGINVVEFA
DGSRIVYTFPTMLLRALLSELKCEFSGPFSIMYEQYGLVFDLVLNPPQPM
RWSPFSVGTPSDYLDGVLYRIPQTKKEQGGVTFTGAFAKQEGAFFGDPDK
ALQEASDGGYTAIELRSDGEVIQSVTSVTQARGGPATGTQMLSTQVGEVE
REIVSVARGTFVGYLDIDGERWWDIRETQKGKVQGGDMSQALGSDCRHRE
DVAALRRALDESNDVETRDAITSEAQMLKEKLENIQRQDRKFRKEGVLKE
DEAPTEKPADARVDDGDSEVDGRDDNKDVKEGVASVRVQNEFMPISLLRS
*
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spliced messenger RNA

>Ggra10635.t1 ID=Ggra10635.t1|Name=Ggra10635.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1503bp|location=Sequence derived from alignment at tig00000904_pilon:461175..462677+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCAAGTCCCATCATCTCCTCTTTCACGCCGCTGGAAAAAACAGATGA
CTACCGCATCGAAAATGCCTCCACCACGGGCGGAATGCTTTTCGACGACC
CGAAAGAAGCCGAGATGATTCGTCGAAGTGTACAGTTTGTGCTGCAACGC
GTGGGATCACAGGTGCTTCAAGGAAATATCACCTTTTCTGGAATGTCAAT
GCCCGTACATATGAATGAACCTAGAAGTCTTCTTGAGCGTATCACAGATG
ATTGGGCATATGCTCCATTGTATTTAAACGCAGCAGCTGCGACGAAAGAC
CCTGTACAACGTATCAAACTGGTGGCTGCGTTTGTTGTATCTGGATTGCA
TTGTATCGAAACATTAGCAAAGCCGTTCAACCCCATTCTTGGCAGCACCT
ATCAAGCAACTCTAAGTGACGGAACCCCCTGCTACATTGAGCAAACTAGT
CATCACCCACCCGTCACACATTATACGATTCGTCCTGAGGACAAGAGCTA
TCTTCTATCAGGCTTTAGCGGCGTCCAGGGGGGTGTAGTATGGGGGCTAG
ACACGGCGCTTTCTTCACGAAGAGTCGGCATCAACGTGGTGGAGTTTGCA
GACGGAAGCCGAATCGTATATACGTTTCCAACGATGTTGCTGCGTGCGCT
TTTGAGTGAGCTCAAGTGCGAGTTTTCAGGCCCGTTTTCGATCATGTACG
AACAGTATGGACTTGTTTTTGACTTGGTGCTGAATCCCCCGCAGCCCATG
CGCTGGTCTCCATTCAGCGTGGGAACGCCTTCAGATTACTTGGATGGCGT
GCTATACCGAATCCCACAAACCAAAAAGGAGCAAGGTGGCGTAACGTTTA
CAGGTGCTTTTGCAAAGCAGGAAGGGGCGTTTTTCGGCGATCCTGACAAG
GCACTTCAAGAAGCGTCGGATGGCGGTTACACAGCCATCGAGCTGCGAAG
CGATGGCGAAGTGATACAATCCGTAACAAGCGTGACGCAAGCACGAGGCG
GACCCGCGACAGGAACGCAAATGCTGAGCACGCAGGTGGGCGAGGTGGAG
CGCGAAATCGTGTCCGTGGCGCGCGGTACGTTCGTCGGATACCTCGATAT
TGACGGCGAACGTTGGTGGGACATTCGCGAAACGCAGAAAGGTAAGGTGC
AGGGCGGCGATATGTCACAAGCACTTGGTAGTGATTGTCGACATAGAGAG
GATGTTGCTGCGTTGAGACGCGCGTTGGATGAAAGCAATGACGTGGAAAC
GAGGGATGCTATCACGAGCGAGGCTCAGATGCTGAAGGAGAAGTTGGAGA
ATATTCAACGTCAGGATCGAAAGTTTAGGAAGGAAGGGGTGTTGAAAGAA
GACGAGGCTCCAACGGAGAAGCCAGCAGATGCTCGCGTTGATGATGGTGA
CAGCGAAGTTGACGGGCGCGACGATAACAAGGATGTGAAAGAAGGCGTAG
CGAGTGTTAGAGTACAAAACGAGTTTATGCCGATTTCGCTTCTGAGGAGT
TGA
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protein sequence of Ggra10635.t1

>Ggra10635.t1 ID=Ggra10635.t1|Name=Ggra10635.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=501bp
MSSPIISSFTPLEKTDDYRIENASTTGGMLFDDPKEAEMIRRSVQFVLQR
VGSQVLQGNITFSGMSMPVHMNEPRSLLERITDDWAYAPLYLNAAAATKD
PVQRIKLVAAFVVSGLHCIETLAKPFNPILGSTYQATLSDGTPCYIEQTS
HHPPVTHYTIRPEDKSYLLSGFSGVQGGVVWGLDTALSSRRVGINVVEFA
DGSRIVYTFPTMLLRALLSELKCEFSGPFSIMYEQYGLVFDLVLNPPQPM
RWSPFSVGTPSDYLDGVLYRIPQTKKEQGGVTFTGAFAKQEGAFFGDPDK
ALQEASDGGYTAIELRSDGEVIQSVTSVTQARGGPATGTQMLSTQVGEVE
REIVSVARGTFVGYLDIDGERWWDIRETQKGKVQGGDMSQALGSDCRHRE
DVAALRRALDESNDVETRDAITSEAQMLKEKLENIQRQDRKFRKEGVLKE
DEAPTEKPADARVDDGDSEVDGRDDNKDVKEGVASVRVQNEFMPISLLRS
*
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mRNA from alignment at tig00000904_pilon:461175..462677+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra10635.t1 ID=Ggra10635.t1|Name=Ggra10635.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1503bp|location=Sequence derived from alignment at tig00000904_pilon:461175..462677+ (Gracilaria gracilis GNS1m male)
ATGTCAAGTCCCATCATCTCCTCTTTCACGCCGCTGGAAAAAACAGATGA
CTACCGCATCGAAAATGCCTCCACCACGGGCGGAATGCTTTTCGACGACC
CGAAAGAAGCCGAGATGATTCGTCGAAGTGTACAGTTTGTGCTGCAACGC
GTGGGATCACAGGTGCTTCAAGGAAATATCACCTTTTCTGGAATGTCAAT
GCCCGTACATATGAATGAACCTAGAAGTCTTCTTGAGCGTATCACAGATG
ATTGGGCATATGCTCCATTGTATTTAAACGCAGCAGCTGCGACGAAAGAC
CCTGTACAACGTATCAAACTGGTGGCTGCGTTTGTTGTATCTGGATTGCA
TTGTATCGAAACATTAGCAAAGCCGTTCAACCCCATTCTTGGCAGCACCT
ATCAAGCAACTCTAAGTGACGGAACCCCCTGCTACATTGAGCAAACTAGT
CATCACCCACCCGTCACACATTATACGATTCGTCCTGAGGACAAGAGCTA
TCTTCTATCAGGCTTTAGCGGCGTCCAGGGGGGTGTAGTATGGGGGCTAG
ACACGGCGCTTTCTTCACGAAGAGTCGGCATCAACGTGGTGGAGTTTGCA
GACGGAAGCCGAATCGTATATACGTTTCCAACGATGTTGCTGCGTGCGCT
TTTGAGTGAGCTCAAGTGCGAGTTTTCAGGCCCGTTTTCGATCATGTACG
AACAGTATGGACTTGTTTTTGACTTGGTGCTGAATCCCCCGCAGCCCATG
CGCTGGTCTCCATTCAGCGTGGGAACGCCTTCAGATTACTTGGATGGCGT
GCTATACCGAATCCCACAAACCAAAAAGGAGCAAGGTGGCGTAACGTTTA
CAGGTGCTTTTGCAAAGCAGGAAGGGGCGTTTTTCGGCGATCCTGACAAG
GCACTTCAAGAAGCGTCGGATGGCGGTTACACAGCCATCGAGCTGCGAAG
CGATGGCGAAGTGATACAATCCGTAACAAGCGTGACGCAAGCACGAGGCG
GACCCGCGACAGGAACGCAAATGCTGAGCACGCAGGTGGGCGAGGTGGAG
CGCGAAATCGTGTCCGTGGCGCGCGGTACGTTCGTCGGATACCTCGATAT
TGACGGCGAACGTTGGTGGGACATTCGCGAAACGCAGAAAGGTAAGGTGC
AGGGCGGCGATATGTCACAAGCACTTGGTAGTGATTGTCGACATAGAGAG
GATGTTGCTGCGTTGAGACGCGCGTTGGATGAAAGCAATGACGTGGAAAC
GAGGGATGCTATCACGAGCGAGGCTCAGATGCTGAAGGAGAAGTTGGAGA
ATATTCAACGTCAGGATCGAAAGTTTAGGAAGGAAGGGGTGTTGAAAGAA
GACGAGGCTCCAACGGAGAAGCCAGCAGATGCTCGCGTTGATGATGGTGA
CAGCGAAGTTGACGGGCGCGACGATAACAAGGATGTGAAAGAAGGCGTAG
CGAGTGTTAGAGTACAAAACGAGTTTATGCCGATTTCGCTTCTGAGGAGT
TGA
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Coding sequence (CDS) from alignment at tig00000904_pilon:461175..462677+

>Ggra10635.t1 ID=Ggra10635.t1|Name=Ggra10635.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1503bp|location=Sequence derived from alignment at tig00000904_pilon:461175..462677+ (Gracilaria gracilis GNS1m male)
ATGTCAAGTCCCATCATCTCCTCTTTCACGCCGCTGGAAAAAACAGATGA
CTACCGCATCGAAAATGCCTCCACCACGGGCGGAATGCTTTTCGACGACC
CGAAAGAAGCCGAGATGATTCGTCGAAGTGTACAGTTTGTGCTGCAACGC
GTGGGATCACAGGTGCTTCAAGGAAATATCACCTTTTCTGGAATGTCAAT
GCCCGTACATATGAATGAACCTAGAAGTCTTCTTGAGCGTATCACAGATG
ATTGGGCATATGCTCCATTGTATTTAAACGCAGCAGCTGCGACGAAAGAC
CCTGTACAACGTATCAAACTGGTGGCTGCGTTTGTTGTATCTGGATTGCA
TTGTATCGAAACATTAGCAAAGCCGTTCAACCCCATTCTTGGCAGCACCT
ATCAAGCAACTCTAAGTGACGGAACCCCCTGCTACATTGAGCAAACTAGT
CATCACCCACCCGTCACACATTATACGATTCGTCCTGAGGACAAGAGCTA
TCTTCTATCAGGCTTTAGCGGCGTCCAGGGGGGTGTAGTATGGGGGCTAG
ACACGGCGCTTTCTTCACGAAGAGTCGGCATCAACGTGGTGGAGTTTGCA
GACGGAAGCCGAATCGTATATACGTTTCCAACGATGTTGCTGCGTGCGCT
TTTGAGTGAGCTCAAGTGCGAGTTTTCAGGCCCGTTTTCGATCATGTACG
AACAGTATGGACTTGTTTTTGACTTGGTGCTGAATCCCCCGCAGCCCATG
CGCTGGTCTCCATTCAGCGTGGGAACGCCTTCAGATTACTTGGATGGCGT
GCTATACCGAATCCCACAAACCAAAAAGGAGCAAGGTGGCGTAACGTTTA
CAGGTGCTTTTGCAAAGCAGGAAGGGGCGTTTTTCGGCGATCCTGACAAG
GCACTTCAAGAAGCGTCGGATGGCGGTTACACAGCCATCGAGCTGCGAAG
CGATGGCGAAGTGATACAATCCGTAACAAGCGTGACGCAAGCACGAGGCG
GACCCGCGACAGGAACGCAAATGCTGAGCACGCAGGTGGGCGAGGTGGAG
CGCGAAATCGTGTCCGTGGCGCGCGGTACGTTCGTCGGATACCTCGATAT
TGACGGCGAACGTTGGTGGGACATTCGCGAAACGCAGAAAGGTAAGGTGC
AGGGCGGCGATATGTCACAAGCACTTGGTAGTGATTGTCGACATAGAGAG
GATGTTGCTGCGTTGAGACGCGCGTTGGATGAAAGCAATGACGTGGAAAC
GAGGGATGCTATCACGAGCGAGGCTCAGATGCTGAAGGAGAAGTTGGAGA
ATATTCAACGTCAGGATCGAAAGTTTAGGAAGGAAGGGGTGTTGAAAGAA
GACGAGGCTCCAACGGAGAAGCCAGCAGATGCTCGCGTTGATGATGGTGA
CAGCGAAGTTGACGGGCGCGACGATAACAAGGATGTGAAAGAAGGCGTAG
CGAGTGTTAGAGTACAAAACGAGTTTATGCCGATTTCGCTTCTGAGGAGT
TGA
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