Ggra10633.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra10633.t1
Unique Name	Ggra10633.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	721

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000904_pilon	contig	tig00000904_pilon:453332..455494 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	637389.Acaty_c2303
Preferred name	infB
PFAMs	GTP_EFTU,GTP_EFTU_D2,IF-2,IF2_N,IF2_assoc
Max annot lvl	225057\|Acidithiobacillales
KEGG ko	ko:K02519
Evalue	2.46e-111
EggNOG OGs	COG0532@1\|root,COG0532@2\|Bacteria,1MV26@1224\|Proteobacteria,1RM9X@1236\|Gammaproteobacteria,2NCI0@225057\|Acidithiobacillales
Description	One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex
COG category	J
BRITE	ko00000,ko03012,ko03029

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra10633	Ggra10633	Gracilaria gracilis GNS1m male	gene	tig00000904_pilon 453332..455494 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra10633.t1.stop1	Ggra10633.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000904_pilon 453332..453334 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra10633.t1.CDS1	Ggra10633.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000904_pilon 453332..455494 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra10633.t1.exon1	Ggra10633.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000904_pilon 453332..455494 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra10633.t1.start1	Ggra10633.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000904_pilon 455492..455494 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra10633.t1	Ggra10633.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000904_pilon 453332..455494 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000904_pilon:453332..455494-
coding sequence from alignment at tig00000904_pilon:453332..455494-

mRNA sequence

>Ggra10633.t1 ID=Ggra10633.t1|Name=Ggra10633.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=721bp
MRMSITPNILSRSMISRSNLLRQPPFPRSLAMAAMRETNEGSDRRPRAKG
DMKTKKKARTHQYGLAWRKQQYVQRRPSPSKRKEQIIPVREVVLPELGLT
SQQLAALAEYSEEKVFKVAKDLDDSVYTPRSVLTPALVELVTEELNLRVS
FKPQTKRLVSSNEADAVKNGEIISRAPIITVMGHVDHGKTSLLDSLRHSD
IAKQEAGGITQSVAAFQVPLSKADNSSGASFATFIDTPGHAAFKAMRANG
TVVTDIVVLVVAAEDGVMPQTIEAANLARQANVPIIVAVNKCDVPGADPD
RVRYQLLDLLGINTEQLGGDVQCVDISAKTGANLPQLLDAISLQAEMSDL
RTSPNAPGAGICLESRLDRSLGSVATIVVRSGTLRAGDFVVFQSPKVLRG
ELYGRVRSIIASDSTTLEEAVPGMTVGVIGIKTAIPPGAEVQVVRNEKAA
KSKSRDMLSRNMAAASTIELANSLLQKREAEMALIRQEESPATEDSEAEE
QIDGVEKQTLLVLVKGEVQGSADAVAQCIQSLETADLNIRLLSVGVGDIN
DLDLKVISATKHVKGNTDEPIIVAFNVKAKESAMKTAKRYSIPILSHSLI
YHLEDDVKNRIHDLLSARQVVEEIKGTASVVRVFENGAIAGCSMDNGSIA
QNDKVRVMRLPPIDSDQRTREEVFSGPVESIKRFAKTVRSVEKGSECGLS
VKEWSGFEAGDVIEVITEKA*

spliced messenger RNA

>Ggra10633.t1 ID=Ggra10633.t1|Name=Ggra10633.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2163bp|location=Sequence derived from alignment at tig00000904_pilon:453332..455494- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGGATGTCGATAACTCCAAATATTCTATCACGATCGATGATCTCGCG
CTCTAATCTCCTGCGTCAGCCACCGTTCCCAAGAAGCTTGGCGATGGCTG
CCATGCGCGAAACGAATGAAGGATCGGATAGACGACCACGAGCAAAAGGT
GACATGAAAACCAAGAAGAAAGCACGAACTCATCAATACGGCCTGGCATG
GAGGAAGCAACAATATGTTCAAAGGAGACCGTCACCTTCCAAGAGGAAAG
AACAAATTATTCCTGTTCGAGAAGTCGTGCTTCCCGAACTTGGATTGACA
TCACAGCAATTGGCTGCGTTAGCTGAATACTCGGAAGAAAAGGTCTTCAA
AGTTGCCAAGGATCTGGACGACTCCGTTTACACGCCGAGGTCAGTGCTCA
CCCCGGCGCTAGTAGAGCTAGTTACGGAGGAGCTAAATCTCAGGGTATCA
TTCAAACCACAAACAAAACGTCTAGTTTCTTCGAATGAAGCAGATGCTGT
GAAAAATGGTGAGATCATCTCCAGGGCACCCATCATAACTGTTATGGGTC
ATGTTGACCATGGAAAGACATCTCTTCTTGATTCTCTGAGACACAGCGAC
ATAGCGAAGCAAGAAGCTGGCGGCATAACCCAAAGCGTTGCCGCATTTCA
AGTTCCGTTGTCGAAAGCAGACAACAGCTCAGGAGCGTCCTTTGCGACAT
TTATTGACACACCTGGACATGCTGCCTTCAAAGCAATGCGCGCGAACGGA
ACCGTAGTGACAGACATTGTCGTGTTAGTGGTTGCGGCGGAGGATGGAGT
CATGCCTCAAACAATAGAAGCGGCTAATCTAGCGCGCCAGGCTAATGTCC
CCATTATCGTCGCCGTCAACAAGTGCGACGTCCCAGGCGCAGATCCGGAT
CGTGTAAGATATCAACTGTTGGACCTACTTGGGATAAACACCGAACAGCT
CGGTGGCGATGTACAATGCGTAGACATCTCCGCCAAGACAGGAGCGAACT
TACCGCAACTACTCGATGCGATTTCGCTTCAGGCCGAAATGTCAGATCTC
CGCACGAGCCCAAACGCGCCAGGTGCCGGAATCTGTTTGGAGTCGAGACT
GGACCGTTCGTTGGGATCAGTAGCAACGATTGTGGTTCGTAGTGGCACAT
TGCGCGCTGGGGATTTTGTCGTGTTTCAGTCTCCCAAGGTTCTACGAGGT
GAATTGTATGGTCGCGTTCGAAGCATTATTGCGAGCGACTCTACAACGCT
GGAGGAGGCCGTGCCCGGTATGACTGTCGGTGTCATTGGTATCAAGACAG
CCATACCACCGGGGGCCGAGGTTCAAGTAGTGCGCAATGAGAAGGCTGCG
AAATCAAAGTCGCGTGATATGCTTAGTAGAAACATGGCAGCTGCTTCAAC
AATAGAGCTGGCGAACTCTTTGCTGCAAAAACGAGAGGCAGAAATGGCTT
TGATAAGACAAGAAGAATCCCCAGCAACTGAAGATTCCGAAGCAGAGGAG
CAAATTGATGGTGTAGAGAAACAAACGCTCCTTGTTCTCGTAAAAGGCGA
AGTACAGGGAAGTGCAGACGCCGTAGCACAATGCATCCAATCGTTAGAGA
CAGCCGATTTGAACATCCGCCTCCTTAGCGTTGGAGTGGGAGATATCAAT
GACTTGGATCTCAAGGTCATATCGGCCACTAAACACGTGAAAGGAAACAC
AGACGAACCAATAATCGTTGCGTTTAACGTGAAAGCTAAGGAATCAGCCA
TGAAAACGGCGAAACGATATTCAATCCCAATCTTGTCTCATTCATTGATC
TATCACCTTGAAGACGATGTGAAGAATCGTATACATGACCTGCTCTCTGC
GAGGCAGGTTGTGGAAGAAATCAAGGGAACTGCTTCCGTGGTGCGTGTGT
TTGAAAACGGTGCTATTGCTGGATGCAGTATGGATAATGGCTCAATTGCG
CAGAACGACAAAGTCAGAGTAATGCGATTGCCACCCATTGACTCCGATCA
ACGCACGCGGGAAGAGGTGTTCAGCGGACCAGTAGAGTCTATCAAACGGT
TCGCCAAAACGGTTCGCTCCGTTGAAAAGGGTTCTGAATGTGGGTTAAGT
GTGAAAGAGTGGTCTGGTTTCGAAGCAGGAGATGTGATAGAGGTGATAAC
GGAAAAAGCGTGA

protein sequence of Ggra10633.t1

>Ggra10633.t1 ID=Ggra10633.t1|Name=Ggra10633.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=721bp
MRMSITPNILSRSMISRSNLLRQPPFPRSLAMAAMRETNEGSDRRPRAKG
DMKTKKKARTHQYGLAWRKQQYVQRRPSPSKRKEQIIPVREVVLPELGLT
SQQLAALAEYSEEKVFKVAKDLDDSVYTPRSVLTPALVELVTEELNLRVS
FKPQTKRLVSSNEADAVKNGEIISRAPIITVMGHVDHGKTSLLDSLRHSD
IAKQEAGGITQSVAAFQVPLSKADNSSGASFATFIDTPGHAAFKAMRANG
TVVTDIVVLVVAAEDGVMPQTIEAANLARQANVPIIVAVNKCDVPGADPD
RVRYQLLDLLGINTEQLGGDVQCVDISAKTGANLPQLLDAISLQAEMSDL
RTSPNAPGAGICLESRLDRSLGSVATIVVRSGTLRAGDFVVFQSPKVLRG
ELYGRVRSIIASDSTTLEEAVPGMTVGVIGIKTAIPPGAEVQVVRNEKAA
KSKSRDMLSRNMAAASTIELANSLLQKREAEMALIRQEESPATEDSEAEE
QIDGVEKQTLLVLVKGEVQGSADAVAQCIQSLETADLNIRLLSVGVGDIN
DLDLKVISATKHVKGNTDEPIIVAFNVKAKESAMKTAKRYSIPILSHSLI
YHLEDDVKNRIHDLLSARQVVEEIKGTASVVRVFENGAIAGCSMDNGSIA
QNDKVRVMRLPPIDSDQRTREEVFSGPVESIKRFAKTVRSVEKGSECGLS
VKEWSGFEAGDVIEVITEKA*

mRNA from alignment at tig00000904_pilon:453332..455494-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra10633.t1 ID=Ggra10633.t1|Name=Ggra10633.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2163bp|location=Sequence derived from alignment at tig00000904_pilon:453332..455494- (Gracilaria gracilis GNS1m male)
ATGCGGATGTCGATAACTCCAAATATTCTATCACGATCGATGATCTCGCG
CTCTAATCTCCTGCGTCAGCCACCGTTCCCAAGAAGCTTGGCGATGGCTG
CCATGCGCGAAACGAATGAAGGATCGGATAGACGACCACGAGCAAAAGGT
GACATGAAAACCAAGAAGAAAGCACGAACTCATCAATACGGCCTGGCATG
GAGGAAGCAACAATATGTTCAAAGGAGACCGTCACCTTCCAAGAGGAAAG
AACAAATTATTCCTGTTCGAGAAGTCGTGCTTCCCGAACTTGGATTGACA
TCACAGCAATTGGCTGCGTTAGCTGAATACTCGGAAGAAAAGGTCTTCAA
AGTTGCCAAGGATCTGGACGACTCCGTTTACACGCCGAGGTCAGTGCTCA
CCCCGGCGCTAGTAGAGCTAGTTACGGAGGAGCTAAATCTCAGGGTATCA
TTCAAACCACAAACAAAACGTCTAGTTTCTTCGAATGAAGCAGATGCTGT
GAAAAATGGTGAGATCATCTCCAGGGCACCCATCATAACTGTTATGGGTC
ATGTTGACCATGGAAAGACATCTCTTCTTGATTCTCTGAGACACAGCGAC
ATAGCGAAGCAAGAAGCTGGCGGCATAACCCAAAGCGTTGCCGCATTTCA
AGTTCCGTTGTCGAAAGCAGACAACAGCTCAGGAGCGTCCTTTGCGACAT
TTATTGACACACCTGGACATGCTGCCTTCAAAGCAATGCGCGCGAACGGA
ACCGTAGTGACAGACATTGTCGTGTTAGTGGTTGCGGCGGAGGATGGAGT
CATGCCTCAAACAATAGAAGCGGCTAATCTAGCGCGCCAGGCTAATGTCC
CCATTATCGTCGCCGTCAACAAGTGCGACGTCCCAGGCGCAGATCCGGAT
CGTGTAAGATATCAACTGTTGGACCTACTTGGGATAAACACCGAACAGCT
CGGTGGCGATGTACAATGCGTAGACATCTCCGCCAAGACAGGAGCGAACT
TACCGCAACTACTCGATGCGATTTCGCTTCAGGCCGAAATGTCAGATCTC
CGCACGAGCCCAAACGCGCCAGGTGCCGGAATCTGTTTGGAGTCGAGACT
GGACCGTTCGTTGGGATCAGTAGCAACGATTGTGGTTCGTAGTGGCACAT
TGCGCGCTGGGGATTTTGTCGTGTTTCAGTCTCCCAAGGTTCTACGAGGT
GAATTGTATGGTCGCGTTCGAAGCATTATTGCGAGCGACTCTACAACGCT
GGAGGAGGCCGTGCCCGGTATGACTGTCGGTGTCATTGGTATCAAGACAG
CCATACCACCGGGGGCCGAGGTTCAAGTAGTGCGCAATGAGAAGGCTGCG
AAATCAAAGTCGCGTGATATGCTTAGTAGAAACATGGCAGCTGCTTCAAC
AATAGAGCTGGCGAACTCTTTGCTGCAAAAACGAGAGGCAGAAATGGCTT
TGATAAGACAAGAAGAATCCCCAGCAACTGAAGATTCCGAAGCAGAGGAG
CAAATTGATGGTGTAGAGAAACAAACGCTCCTTGTTCTCGTAAAAGGCGA
AGTACAGGGAAGTGCAGACGCCGTAGCACAATGCATCCAATCGTTAGAGA
CAGCCGATTTGAACATCCGCCTCCTTAGCGTTGGAGTGGGAGATATCAAT
GACTTGGATCTCAAGGTCATATCGGCCACTAAACACGTGAAAGGAAACAC
AGACGAACCAATAATCGTTGCGTTTAACGTGAAAGCTAAGGAATCAGCCA
TGAAAACGGCGAAACGATATTCAATCCCAATCTTGTCTCATTCATTGATC
TATCACCTTGAAGACGATGTGAAGAATCGTATACATGACCTGCTCTCTGC
GAGGCAGGTTGTGGAAGAAATCAAGGGAACTGCTTCCGTGGTGCGTGTGT
TTGAAAACGGTGCTATTGCTGGATGCAGTATGGATAATGGCTCAATTGCG
CAGAACGACAAAGTCAGAGTAATGCGATTGCCACCCATTGACTCCGATCA
ACGCACGCGGGAAGAGGTGTTCAGCGGACCAGTAGAGTCTATCAAACGGT
TCGCCAAAACGGTTCGCTCCGTTGAAAAGGGTTCTGAATGTGGGTTAAGT
GTGAAAGAGTGGTCTGGTTTCGAAGCAGGAGATGTGATAGAGGTGATAAC
GGAAAAAGCGTGA

Coding sequence (CDS) from alignment at tig00000904_pilon:453332..455494-

>Ggra10633.t1 ID=Ggra10633.t1|Name=Ggra10633.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=2163bp|location=Sequence derived from alignment at tig00000904_pilon:453332..455494- (Gracilaria gracilis GNS1m male)
ATGCGGATGTCGATAACTCCAAATATTCTATCACGATCGATGATCTCGCG
CTCTAATCTCCTGCGTCAGCCACCGTTCCCAAGAAGCTTGGCGATGGCTG
CCATGCGCGAAACGAATGAAGGATCGGATAGACGACCACGAGCAAAAGGT
GACATGAAAACCAAGAAGAAAGCACGAACTCATCAATACGGCCTGGCATG
GAGGAAGCAACAATATGTTCAAAGGAGACCGTCACCTTCCAAGAGGAAAG
AACAAATTATTCCTGTTCGAGAAGTCGTGCTTCCCGAACTTGGATTGACA
TCACAGCAATTGGCTGCGTTAGCTGAATACTCGGAAGAAAAGGTCTTCAA
AGTTGCCAAGGATCTGGACGACTCCGTTTACACGCCGAGGTCAGTGCTCA
CCCCGGCGCTAGTAGAGCTAGTTACGGAGGAGCTAAATCTCAGGGTATCA
TTCAAACCACAAACAAAACGTCTAGTTTCTTCGAATGAAGCAGATGCTGT
GAAAAATGGTGAGATCATCTCCAGGGCACCCATCATAACTGTTATGGGTC
ATGTTGACCATGGAAAGACATCTCTTCTTGATTCTCTGAGACACAGCGAC
ATAGCGAAGCAAGAAGCTGGCGGCATAACCCAAAGCGTTGCCGCATTTCA
AGTTCCGTTGTCGAAAGCAGACAACAGCTCAGGAGCGTCCTTTGCGACAT
TTATTGACACACCTGGACATGCTGCCTTCAAAGCAATGCGCGCGAACGGA
ACCGTAGTGACAGACATTGTCGTGTTAGTGGTTGCGGCGGAGGATGGAGT
CATGCCTCAAACAATAGAAGCGGCTAATCTAGCGCGCCAGGCTAATGTCC
CCATTATCGTCGCCGTCAACAAGTGCGACGTCCCAGGCGCAGATCCGGAT
CGTGTAAGATATCAACTGTTGGACCTACTTGGGATAAACACCGAACAGCT
CGGTGGCGATGTACAATGCGTAGACATCTCCGCCAAGACAGGAGCGAACT
TACCGCAACTACTCGATGCGATTTCGCTTCAGGCCGAAATGTCAGATCTC
CGCACGAGCCCAAACGCGCCAGGTGCCGGAATCTGTTTGGAGTCGAGACT
GGACCGTTCGTTGGGATCAGTAGCAACGATTGTGGTTCGTAGTGGCACAT
TGCGCGCTGGGGATTTTGTCGTGTTTCAGTCTCCCAAGGTTCTACGAGGT
GAATTGTATGGTCGCGTTCGAAGCATTATTGCGAGCGACTCTACAACGCT
GGAGGAGGCCGTGCCCGGTATGACTGTCGGTGTCATTGGTATCAAGACAG
CCATACCACCGGGGGCCGAGGTTCAAGTAGTGCGCAATGAGAAGGCTGCG
AAATCAAAGTCGCGTGATATGCTTAGTAGAAACATGGCAGCTGCTTCAAC
AATAGAGCTGGCGAACTCTTTGCTGCAAAAACGAGAGGCAGAAATGGCTT
TGATAAGACAAGAAGAATCCCCAGCAACTGAAGATTCCGAAGCAGAGGAG
CAAATTGATGGTGTAGAGAAACAAACGCTCCTTGTTCTCGTAAAAGGCGA
AGTACAGGGAAGTGCAGACGCCGTAGCACAATGCATCCAATCGTTAGAGA
CAGCCGATTTGAACATCCGCCTCCTTAGCGTTGGAGTGGGAGATATCAAT
GACTTGGATCTCAAGGTCATATCGGCCACTAAACACGTGAAAGGAAACAC
AGACGAACCAATAATCGTTGCGTTTAACGTGAAAGCTAAGGAATCAGCCA
TGAAAACGGCGAAACGATATTCAATCCCAATCTTGTCTCATTCATTGATC
TATCACCTTGAAGACGATGTGAAGAATCGTATACATGACCTGCTCTCTGC
GAGGCAGGTTGTGGAAGAAATCAAGGGAACTGCTTCCGTGGTGCGTGTGT
TTGAAAACGGTGCTATTGCTGGATGCAGTATGGATAATGGCTCAATTGCG
CAGAACGACAAAGTCAGAGTAATGCGATTGCCACCCATTGACTCCGATCA
ACGCACGCGGGAAGAGGTGTTCAGCGGACCAGTAGAGTCTATCAAACGGT
TCGCCAAAACGGTTCGCTCCGTTGAAAAGGGTTCTGAATGTGGGTTAAGT
GTGAAAGAGTGGTCTGGTTTCGAAGCAGGAGATGTGATAGAGGTGATAAC
GGAAAAAGCGTGA