Ggra10632.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra10632.t1
Unique Name	Ggra10632.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	420

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000904_pilon	contig	tig00000904_pilon:451890..453149 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra10632	Ggra10632	Gracilaria gracilis GNS1m male	gene	tig00000904_pilon 451890..453149 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra10632.t1.start1	Ggra10632.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000904_pilon 451890..451892 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra10632.t1.CDS1	Ggra10632.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000904_pilon 451890..453149 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra10632.t1.exon1	Ggra10632.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000904_pilon 451890..453149 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra10632.t1.stop1	Ggra10632.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000904_pilon 453147..453149 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra10632.t1	Ggra10632.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000904_pilon 451890..453149 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000904_pilon:451890..453149+
coding sequence from alignment at tig00000904_pilon:451890..453149+

mRNA sequence

>Ggra10632.t1 ID=Ggra10632.t1|Name=Ggra10632.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=420bp
MPPRYNADGTCLQQDRVAGFSVRFDVNDVFGRAVAVHAFAGSVLIAFERA
LALVRRTFRFHHSARKPSSRPSLPSVYYVTTSDVQSIIMVASQPLKSSPS
VLAVTSSKLLCIDVHPEKYAAIKYSVLGIFCERHGLPISLSASTDDRFAL
LGFDSGIIKVIDIQKPARRRTFITRESADILVGNQKFLLASSSIQPIELS
VWAISNTTPLRQFNQQSEGWNRIHTIAAIQPLSNPNQFFVWNGSDRLFIL
DVSTGSIVCNVDVHARFIREIRSAVEEAEHGAGSAQLGACKLAVFADERS
LALATSNRVFVVSLSPNHRAGKIQRQFDGVRGAFVALSTDDRVVVTAEGN
AFGRLGVHVSGRASLATLPRLQVWNVEKEQLSSEIHLPSAATSLSVCADV
VAVVCGAVGKAVVVFAGGL*

spliced messenger RNA

>Ggra10632.t1 ID=Ggra10632.t1|Name=Ggra10632.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1260bp|location=Sequence derived from alignment at tig00000904_pilon:451890..453149+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCACCCCGATACAACGCCGATGGAACCTGTCTTCAGCAGGATCGCGT
CGCCGGTTTTTCTGTACGCTTCGATGTCAATGATGTGTTTGGACGAGCTG
TAGCCGTGCACGCCTTTGCAGGGTCGGTGCTCATTGCCTTTGAACGAGCC
CTTGCTTTGGTTCGACGCACGTTCAGGTTCCATCATTCCGCACGAAAACC
CTCCTCTCGCCCTTCTCTTCCATCTGTTTATTATGTCACTACCAGTGATG
TTCAATCAATCATCATGGTTGCGTCGCAACCTTTGAAATCGTCACCTTCT
GTACTGGCTGTTACTTCTTCCAAGCTATTGTGCATCGACGTGCATCCGGA
AAAGTACGCCGCCATAAAATACTCAGTTCTCGGTATCTTTTGTGAGCGCC
ATGGACTACCCATATCGTTGTCTGCTTCCACGGATGACCGCTTCGCTTTG
CTTGGATTTGATTCTGGAATCATCAAAGTCATTGACATACAAAAACCTGC
TCGAAGACGCACTTTCATCACCAGAGAAAGCGCTGACATCCTAGTAGGCA
ATCAAAAGTTCCTCTTGGCCTCCAGTTCAATACAACCAATCGAACTTTCT
GTCTGGGCCATTTCAAATACCACACCTCTTCGTCAATTCAACCAACAATC
AGAAGGCTGGAACCGCATCCATACCATTGCCGCCATACAACCTTTGTCAA
ATCCCAATCAGTTCTTCGTGTGGAATGGGTCAGATAGACTTTTTATTCTT
GATGTTTCGACGGGATCGATAGTATGCAACGTCGATGTTCACGCGCGGTT
TATCAGAGAGATTAGAAGTGCCGTTGAAGAAGCTGAACACGGTGCTGGAA
GTGCTCAGTTAGGGGCCTGTAAACTGGCTGTTTTTGCAGATGAAAGATCC
TTAGCTCTTGCAACATCCAATCGAGTGTTTGTTGTCTCACTTTCCCCCAA
CCATCGCGCTGGAAAGATACAAAGACAGTTTGACGGTGTGAGAGGCGCTT
TTGTTGCTTTGAGTACAGACGATCGAGTTGTCGTTACTGCTGAGGGGAAC
GCTTTTGGTCGACTGGGTGTGCACGTTAGTGGGCGAGCTTCTCTTGCTAC
ATTACCTAGATTGCAGGTTTGGAACGTTGAGAAGGAACAGTTAAGCAGCG
AGATTCACTTGCCGAGTGCTGCGACTTCACTCTCTGTTTGTGCCGATGTC
GTAGCTGTCGTTTGCGGAGCCGTTGGTAAAGCTGTGGTAGTTTTTGCCGG
CGGTTTGTAA

protein sequence of Ggra10632.t1

>Ggra10632.t1 ID=Ggra10632.t1|Name=Ggra10632.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=420bp
MPPRYNADGTCLQQDRVAGFSVRFDVNDVFGRAVAVHAFAGSVLIAFERA
LALVRRTFRFHHSARKPSSRPSLPSVYYVTTSDVQSIIMVASQPLKSSPS
VLAVTSSKLLCIDVHPEKYAAIKYSVLGIFCERHGLPISLSASTDDRFAL
LGFDSGIIKVIDIQKPARRRTFITRESADILVGNQKFLLASSSIQPIELS
VWAISNTTPLRQFNQQSEGWNRIHTIAAIQPLSNPNQFFVWNGSDRLFIL
DVSTGSIVCNVDVHARFIREIRSAVEEAEHGAGSAQLGACKLAVFADERS
LALATSNRVFVVSLSPNHRAGKIQRQFDGVRGAFVALSTDDRVVVTAEGN
AFGRLGVHVSGRASLATLPRLQVWNVEKEQLSSEIHLPSAATSLSVCADV
VAVVCGAVGKAVVVFAGGL*

mRNA from alignment at tig00000904_pilon:451890..453149+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra10632.t1 ID=Ggra10632.t1|Name=Ggra10632.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1260bp|location=Sequence derived from alignment at tig00000904_pilon:451890..453149+ (Gracilaria gracilis GNS1m male)
ATGCCACCCCGATACAACGCCGATGGAACCTGTCTTCAGCAGGATCGCGT
CGCCGGTTTTTCTGTACGCTTCGATGTCAATGATGTGTTTGGACGAGCTG
TAGCCGTGCACGCCTTTGCAGGGTCGGTGCTCATTGCCTTTGAACGAGCC
CTTGCTTTGGTTCGACGCACGTTCAGGTTCCATCATTCCGCACGAAAACC
CTCCTCTCGCCCTTCTCTTCCATCTGTTTATTATGTCACTACCAGTGATG
TTCAATCAATCATCATGGTTGCGTCGCAACCTTTGAAATCGTCACCTTCT
GTACTGGCTGTTACTTCTTCCAAGCTATTGTGCATCGACGTGCATCCGGA
AAAGTACGCCGCCATAAAATACTCAGTTCTCGGTATCTTTTGTGAGCGCC
ATGGACTACCCATATCGTTGTCTGCTTCCACGGATGACCGCTTCGCTTTG
CTTGGATTTGATTCTGGAATCATCAAAGTCATTGACATACAAAAACCTGC
TCGAAGACGCACTTTCATCACCAGAGAAAGCGCTGACATCCTAGTAGGCA
ATCAAAAGTTCCTCTTGGCCTCCAGTTCAATACAACCAATCGAACTTTCT
GTCTGGGCCATTTCAAATACCACACCTCTTCGTCAATTCAACCAACAATC
AGAAGGCTGGAACCGCATCCATACCATTGCCGCCATACAACCTTTGTCAA
ATCCCAATCAGTTCTTCGTGTGGAATGGGTCAGATAGACTTTTTATTCTT
GATGTTTCGACGGGATCGATAGTATGCAACGTCGATGTTCACGCGCGGTT
TATCAGAGAGATTAGAAGTGCCGTTGAAGAAGCTGAACACGGTGCTGGAA
GTGCTCAGTTAGGGGCCTGTAAACTGGCTGTTTTTGCAGATGAAAGATCC
TTAGCTCTTGCAACATCCAATCGAGTGTTTGTTGTCTCACTTTCCCCCAA
CCATCGCGCTGGAAAGATACAAAGACAGTTTGACGGTGTGAGAGGCGCTT
TTGTTGCTTTGAGTACAGACGATCGAGTTGTCGTTACTGCTGAGGGGAAC
GCTTTTGGTCGACTGGGTGTGCACGTTAGTGGGCGAGCTTCTCTTGCTAC
ATTACCTAGATTGCAGGTTTGGAACGTTGAGAAGGAACAGTTAAGCAGCG
AGATTCACTTGCCGAGTGCTGCGACTTCACTCTCTGTTTGTGCCGATGTC
GTAGCTGTCGTTTGCGGAGCCGTTGGTAAAGCTGTGGTAGTTTTTGCCGG
CGGTTTGTAA

Coding sequence (CDS) from alignment at tig00000904_pilon:451890..453149+

>Ggra10632.t1 ID=Ggra10632.t1|Name=Ggra10632.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1260bp|location=Sequence derived from alignment at tig00000904_pilon:451890..453149+ (Gracilaria gracilis GNS1m male)
ATGCCACCCCGATACAACGCCGATGGAACCTGTCTTCAGCAGGATCGCGT
CGCCGGTTTTTCTGTACGCTTCGATGTCAATGATGTGTTTGGACGAGCTG
TAGCCGTGCACGCCTTTGCAGGGTCGGTGCTCATTGCCTTTGAACGAGCC
CTTGCTTTGGTTCGACGCACGTTCAGGTTCCATCATTCCGCACGAAAACC
CTCCTCTCGCCCTTCTCTTCCATCTGTTTATTATGTCACTACCAGTGATG
TTCAATCAATCATCATGGTTGCGTCGCAACCTTTGAAATCGTCACCTTCT
GTACTGGCTGTTACTTCTTCCAAGCTATTGTGCATCGACGTGCATCCGGA
AAAGTACGCCGCCATAAAATACTCAGTTCTCGGTATCTTTTGTGAGCGCC
ATGGACTACCCATATCGTTGTCTGCTTCCACGGATGACCGCTTCGCTTTG
CTTGGATTTGATTCTGGAATCATCAAAGTCATTGACATACAAAAACCTGC
TCGAAGACGCACTTTCATCACCAGAGAAAGCGCTGACATCCTAGTAGGCA
ATCAAAAGTTCCTCTTGGCCTCCAGTTCAATACAACCAATCGAACTTTCT
GTCTGGGCCATTTCAAATACCACACCTCTTCGTCAATTCAACCAACAATC
AGAAGGCTGGAACCGCATCCATACCATTGCCGCCATACAACCTTTGTCAA
ATCCCAATCAGTTCTTCGTGTGGAATGGGTCAGATAGACTTTTTATTCTT
GATGTTTCGACGGGATCGATAGTATGCAACGTCGATGTTCACGCGCGGTT
TATCAGAGAGATTAGAAGTGCCGTTGAAGAAGCTGAACACGGTGCTGGAA
GTGCTCAGTTAGGGGCCTGTAAACTGGCTGTTTTTGCAGATGAAAGATCC
TTAGCTCTTGCAACATCCAATCGAGTGTTTGTTGTCTCACTTTCCCCCAA
CCATCGCGCTGGAAAGATACAAAGACAGTTTGACGGTGTGAGAGGCGCTT
TTGTTGCTTTGAGTACAGACGATCGAGTTGTCGTTACTGCTGAGGGGAAC
GCTTTTGGTCGACTGGGTGTGCACGTTAGTGGGCGAGCTTCTCTTGCTAC
ATTACCTAGATTGCAGGTTTGGAACGTTGAGAAGGAACAGTTAAGCAGCG
AGATTCACTTGCCGAGTGCTGCGACTTCACTCTCTGTTTGTGCCGATGTC
GTAGCTGTCGTTTGCGGAGCCGTTGGTAAAGCTGTGGTAGTTTTTGCCGG
CGGTTTGTAA