Ggra10629.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra10629.t1
Unique NameGgra10629.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length217
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000904_piloncontigtig00000904_pilon:436480..437130 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog81824.XP_001750903.1
Preferred namePINX1
PFAMsG-patch
Max annot lvl33154|Opisthokonta
KEGG rclassRC00004,RC00037
KEGG koko:K11135,ko:K14457
KEGG ReactionR03755,R03756
KEGG Pathwayko00561,ko04975,map00561,map04975
GOsGO:0000070,GO:0000228,GO:0000278,GO:0000280,GO:0000494,GO:0000723,GO:0000775,GO:0000776,GO:0000777,GO:0000779,GO:0000781,GO:0000784,GO:0000793,GO:0000819,GO:0003674,GO:0003676,GO:0003723,GO:0004857,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005730,GO:0005819,GO:0005856,GO:0006139,GO:0006259,GO:0006278,GO:0006396,GO:0006725,GO:0006807,GO:0006996,GO:0007004,GO:0007049,GO:0007059,GO:0007080,GO:0007346,GO:0008047,GO:0008104,GO:0008150,GO:0008152,GO:0008285,GO:0009058,GO:0009059,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010389,GO:0010467,GO:0010521,GO:0010556,GO:0010558,GO:0010564,GO:0010605,GO:0010639,GO:0010833,GO:0010948,GO:0010972,GO:0015630,GO:0016043,GO:0016070,GO:0016074,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0022402,GO:0022613,GO:0030234,GO:0031123,GO:0031126,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031396,GO:0031397,GO:0031399,GO:0031400,GO:0031647,GO:0031974,GO:0031981,GO:0032200,GO:0032204,GO:0032205,GO:0032210,GO:0032211,GO:0032268,GO:0032269,GO:0032879,GO:0032880,GO:0032991,GO:0033036,GO:0033043,GO:0033044,GO:0033365,GO:0033967,GO:0034470,GO:0034502,GO:0034504,GO:0034613,GO:0034641,GO:0034645,GO:0034654,GO:0034660,GO:0034963,GO:0042127,GO:0042254,GO:0042592,GO:0043085,GO:0043086,GO:0043144,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043388,GO:0043628,GO:0044085,GO:0044092,GO:0044093,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044430,GO:0044446,GO:0044454,GO:0044464,GO:0044877,GO:0045786,GO:0045930,GO:0045934,GO:0046483,GO:0048285,GO:0048518,GO:0048519,GO:0048523,GO:0050000,GO:0050789,GO:0050790,GO:0050794,GO:0051052,GO:0051053,GO:0051098,GO:0051099,GO:0051101,GO:0051128,GO:0051129,GO:0051171,GO:0051172,GO:0051179,GO:0051234,GO:0051246,GO:0051248,GO:0051276,GO:0051303,GO:0051310,GO:0051338,GO:0051348,GO:0051640,GO:0051641,GO:0051649,GO:0051656,GO:0051726,GO:0051972,GO:0051974,GO:0060249,GO:0060255,GO:0060341,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070034,GO:0070198,GO:0070727,GO:0071704,GO:0071840,GO:0071897,GO:0080090,GO:0090304,GO:0097159,GO:0098687,GO:0098772,GO:0098813,GO:0140014,GO:1900180,GO:1900182,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1901987,GO:1901988,GO:1901990,GO:1901991,GO:1902570,GO:1902749,GO:1902750,GO:1903047,GO:1903320,GO:1903321,GO:1903827,GO:1903829,GO:1904356,GO:1904357,GO:1904742,GO:1904744,GO:1904749,GO:1904751,GO:2000112,GO:2000113,GO:2000278,GO:2000279,GO:2001251
Evalue1.69e-14
EggNOG OGsKOG2809@1|root,KOG2809@2759|Eukaryota,39E7U@33154|Opisthokonta
EC2.3.1.22
Descriptiontelomerase inhibitor activity
COG categoryAD
BRITEko00000,ko00001,ko01000,ko03009,ko03032
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra10629Ggra10629Gracilaria gracilis GNS1m malegenetig00000904_pilon 436480..437130 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10629.t1.stop1Ggra10629.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000904_pilon 436480..436482 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10629.t1.CDS1Ggra10629.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000904_pilon 436480..437130 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10629.t1.exon1Ggra10629.t1.exon1Gracilaria gracilis GNS1m maleexontig00000904_pilon 436480..437130 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10629.t1.start1Ggra10629.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000904_pilon 437128..437130 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10629.t1Ggra10629.t1Gracilaria gracilis GNS1m malepolypeptidetig00000904_pilon 436480..437130 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra10629.t1 ID=Ggra10629.t1|Name=Ggra10629.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=217bp
MAGAVDTRNQAWADDKSRFGLKMLQKMGWSEGKGLGREENGQVNPLRAKK
NFEKEGLGVSVVKNSSWDAPAQMAQGLNSVLAKLCSSNSYMVKREGGEQD
NVANRTVGFYARRAAQKNVKGYSSDALREIFGGVSEGNERKGKEKHKNGE
EGEKHKNGEEKDERDGLCQVEKETGKKQRLGGKRKKKYEKLGVSSKIKKP
HKGDKKKRKRKKEKTR*
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spliced messenger RNA

>Ggra10629.t1 ID=Ggra10629.t1|Name=Ggra10629.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=651bp|location=Sequence derived from alignment at tig00000904_pilon:436480..437130- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGGGCGCCGTCGACACTCGCAACCAAGCATGGGCGGACGACAAATC
CCGATTTGGCCTCAAGATGCTTCAAAAGATGGGGTGGAGCGAGGGAAAAG
GACTGGGACGTGAAGAGAATGGACAAGTGAATCCGTTACGGGCGAAGAAG
AATTTTGAGAAAGAAGGGCTAGGTGTTTCTGTTGTGAAGAACAGTTCCTG
GGATGCCCCGGCCCAAATGGCGCAGGGATTGAATAGCGTACTGGCGAAAC
TGTGCTCGAGCAATTCGTACATGGTCAAGCGGGAGGGGGGTGAACAAGAT
AATGTTGCGAATCGAACGGTTGGATTTTACGCACGCAGGGCGGCGCAAAA
GAATGTTAAGGGCTATTCTTCAGATGCGCTTCGAGAGATTTTTGGAGGGG
TGAGCGAAGGGAATGAGAGAAAAGGGAAGGAGAAACATAAGAATGGAGAA
GAGGGGGAGAAACATAAGAATGGAGAAGAGAAGGATGAGAGGGATGGTCT
GTGTCAGGTTGAAAAAGAAACAGGGAAGAAGCAGCGCCTCGGTGGAAAGC
GAAAGAAGAAGTACGAGAAACTGGGCGTTTCTTCAAAGATAAAGAAACCG
CACAAAGGCGACAAGAAAAAGCGAAAACGAAAGAAGGAAAAAACTCGATA
A
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protein sequence of Ggra10629.t1

>Ggra10629.t1 ID=Ggra10629.t1|Name=Ggra10629.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=217bp
MAGAVDTRNQAWADDKSRFGLKMLQKMGWSEGKGLGREENGQVNPLRAKK
NFEKEGLGVSVVKNSSWDAPAQMAQGLNSVLAKLCSSNSYMVKREGGEQD
NVANRTVGFYARRAAQKNVKGYSSDALREIFGGVSEGNERKGKEKHKNGE
EGEKHKNGEEKDERDGLCQVEKETGKKQRLGGKRKKKYEKLGVSSKIKKP
HKGDKKKRKRKKEKTR*
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mRNA from alignment at tig00000904_pilon:436480..437130-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra10629.t1 ID=Ggra10629.t1|Name=Ggra10629.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=651bp|location=Sequence derived from alignment at tig00000904_pilon:436480..437130- (Gracilaria gracilis GNS1m male)
ATGGCGGGCGCCGTCGACACTCGCAACCAAGCATGGGCGGACGACAAATC
CCGATTTGGCCTCAAGATGCTTCAAAAGATGGGGTGGAGCGAGGGAAAAG
GACTGGGACGTGAAGAGAATGGACAAGTGAATCCGTTACGGGCGAAGAAG
AATTTTGAGAAAGAAGGGCTAGGTGTTTCTGTTGTGAAGAACAGTTCCTG
GGATGCCCCGGCCCAAATGGCGCAGGGATTGAATAGCGTACTGGCGAAAC
TGTGCTCGAGCAATTCGTACATGGTCAAGCGGGAGGGGGGTGAACAAGAT
AATGTTGCGAATCGAACGGTTGGATTTTACGCACGCAGGGCGGCGCAAAA
GAATGTTAAGGGCTATTCTTCAGATGCGCTTCGAGAGATTTTTGGAGGGG
TGAGCGAAGGGAATGAGAGAAAAGGGAAGGAGAAACATAAGAATGGAGAA
GAGGGGGAGAAACATAAGAATGGAGAAGAGAAGGATGAGAGGGATGGTCT
GTGTCAGGTTGAAAAAGAAACAGGGAAGAAGCAGCGCCTCGGTGGAAAGC
GAAAGAAGAAGTACGAGAAACTGGGCGTTTCTTCAAAGATAAAGAAACCG
CACAAAGGCGACAAGAAAAAGCGAAAACGAAAGAAGGAAAAAACTCGATA
A
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Coding sequence (CDS) from alignment at tig00000904_pilon:436480..437130-

>Ggra10629.t1 ID=Ggra10629.t1|Name=Ggra10629.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=651bp|location=Sequence derived from alignment at tig00000904_pilon:436480..437130- (Gracilaria gracilis GNS1m male)
ATGGCGGGCGCCGTCGACACTCGCAACCAAGCATGGGCGGACGACAAATC
CCGATTTGGCCTCAAGATGCTTCAAAAGATGGGGTGGAGCGAGGGAAAAG
GACTGGGACGTGAAGAGAATGGACAAGTGAATCCGTTACGGGCGAAGAAG
AATTTTGAGAAAGAAGGGCTAGGTGTTTCTGTTGTGAAGAACAGTTCCTG
GGATGCCCCGGCCCAAATGGCGCAGGGATTGAATAGCGTACTGGCGAAAC
TGTGCTCGAGCAATTCGTACATGGTCAAGCGGGAGGGGGGTGAACAAGAT
AATGTTGCGAATCGAACGGTTGGATTTTACGCACGCAGGGCGGCGCAAAA
GAATGTTAAGGGCTATTCTTCAGATGCGCTTCGAGAGATTTTTGGAGGGG
TGAGCGAAGGGAATGAGAGAAAAGGGAAGGAGAAACATAAGAATGGAGAA
GAGGGGGAGAAACATAAGAATGGAGAAGAGAAGGATGAGAGGGATGGTCT
GTGTCAGGTTGAAAAAGAAACAGGGAAGAAGCAGCGCCTCGGTGGAAAGC
GAAAGAAGAAGTACGAGAAACTGGGCGTTTCTTCAAAGATAAAGAAACCG
CACAAAGGCGACAAGAAAAAGCGAAAACGAAAGAAGGAAAAAACTCGATA
A
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