Ggra10628.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra10628.t1
Unique NameGgra10628.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length405
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000904_piloncontigtig00000904_pilon:434297..435584 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog55529.EKX41542
PFAMsFKBP_C,Trigger_C,Trigger_N
Max annot lvl2759|Eukaryota
Evalue1.07e-84
EggNOG OGsCOG0544@1|root,2QUET@2759|Eukaryota
Descriptionpeptidyl-prolyl cis-trans isomerase activity
COG categoryO
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra10628Ggra10628Gracilaria gracilis GNS1m malegenetig00000904_pilon 434297..435766 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10628.t1Ggra10628.t1Gracilaria gracilis GNS1m malepolypeptidetig00000904_pilon 434297..435584 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10628.t1.start1Ggra10628.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000904_pilon 434297..434299 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10628.t1.CDS1Ggra10628.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000904_pilon 434297..435498 +
Ggra10628.t1.CDS2Ggra10628.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000904_pilon 435572..435584 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10628.t1.exon1Ggra10628.t1.exon1Gracilaria gracilis GNS1m maleexontig00000904_pilon 434297..435498 +
Ggra10628.t1.exon2Ggra10628.t1.exon2Gracilaria gracilis GNS1m maleexontig00000904_pilon 435572..435584 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10628.t1.intron1Ggra10628.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000904_pilon 435499..435571 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10628.t1.stop1Ggra10628.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000904_pilon 435582..435584 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra10628.t1 ID=Ggra10628.t1|Name=Ggra10628.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=405bp
MNAPGFASSAPRLQLHRQGRRPSLCPARPNIFAPAVLRMGLSVKTAPLPK
SQLSMEISVGKEECSAAWDSIVKELSKKSKIQGFRKGTAPKQLVINQYGK
DNIKASACEEVIEKSIQKALKDSGIHAIGQAQVDSDGGVASVIANYDPHS
SLTFKVKIDVWPEASFISSYESLEIEAEESAFDESLVDKALEDLRQKEAF
SVLAPEGTKAELGKLLVADLVGYYRNEDGSRGDNLPDIADGNSIEINMTE
GKFMPGFVEGLIGADVGETRDVNVEFPATNPRPELAGVKAIFSVTIHAIK
DVVLPELNDDFAVQVSEEKNLENFRKTIRDRLDTESETAQEKNINSAIDN
ELAEIVQVDLPESLVENQVKNKFASMLASFKDKGMPDEQVKAMVTKENYE
MIKV*
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spliced messenger RNA

>Ggra10628.t1 ID=Ggra10628.t1|Name=Ggra10628.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1215bp|location=Sequence derived from alignment at tig00000904_pilon:434297..435584+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAACGCGCCTGGTTTTGCGAGCAGCGCTCCGCGCTTGCAGTTGCATCG
TCAAGGACGCCGCCCTTCATTATGTCCTGCTCGACCAAACATCTTCGCAC
CGGCCGTCTTGCGCATGGGTCTTTCTGTCAAGACAGCGCCCCTACCGAAG
AGCCAGTTGAGCATGGAGATATCAGTTGGCAAGGAAGAATGCAGTGCGGC
ATGGGATTCGATCGTCAAAGAGCTTTCAAAGAAGTCAAAAATTCAGGGCT
TTAGAAAGGGAACTGCTCCAAAACAACTCGTGATCAACCAGTATGGCAAA
GACAACATCAAAGCTAGTGCTTGCGAAGAAGTCATTGAAAAATCCATTCA
GAAAGCTCTGAAAGACTCTGGTATTCATGCCATTGGCCAAGCTCAAGTGG
ACAGTGATGGTGGTGTTGCATCTGTAATTGCCAATTACGATCCTCACTCC
TCCTTGACGTTTAAGGTGAAGATTGATGTCTGGCCTGAAGCATCTTTCAT
TTCTTCCTACGAGAGTCTCGAAATTGAGGCTGAAGAATCGGCATTCGACG
AGTCGCTCGTCGATAAGGCCCTCGAAGATTTGAGACAGAAGGAGGCGTTT
TCTGTCTTGGCACCTGAAGGCACAAAGGCAGAGCTGGGAAAGCTGCTTGT
AGCAGATCTCGTTGGGTATTATCGCAATGAAGATGGAAGTCGGGGAGACA
ATCTACCGGACATTGCTGATGGAAACTCCATCGAAATCAATATGACCGAA
GGAAAATTCATGCCTGGGTTTGTGGAAGGTTTGATTGGGGCCGACGTTGG
AGAAACCCGAGATGTAAATGTCGAGTTTCCGGCAACGAACCCACGACCTG
AGTTGGCAGGTGTAAAAGCGATCTTCTCCGTCACAATTCATGCCATAAAG
GACGTCGTTCTTCCGGAACTGAACGACGACTTTGCCGTCCAAGTCAGTGA
AGAAAAGAACCTTGAAAATTTTCGCAAGACCATTCGAGATAGACTTGATA
CGGAGTCTGAAACTGCCCAAGAGAAGAATATTAACTCTGCGATTGACAAT
GAGCTCGCCGAAATCGTTCAGGTTGACCTTCCCGAGTCTCTCGTTGAAAA
TCAGGTGAAGAACAAGTTTGCCTCGATGCTCGCTTCCTTCAAAGACAAAG
GTATGCCGGATGAGCAAGTGAAAGCCATGGTAACGAAAGAAAACTACGAA
ATGATCAAAGTTTAG
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protein sequence of Ggra10628.t1

>Ggra10628.t1 ID=Ggra10628.t1|Name=Ggra10628.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=405bp
MNAPGFASSAPRLQLHRQGRRPSLCPARPNIFAPAVLRMGLSVKTAPLPK
SQLSMEISVGKEECSAAWDSIVKELSKKSKIQGFRKGTAPKQLVINQYGK
DNIKASACEEVIEKSIQKALKDSGIHAIGQAQVDSDGGVASVIANYDPHS
SLTFKVKIDVWPEASFISSYESLEIEAEESAFDESLVDKALEDLRQKEAF
SVLAPEGTKAELGKLLVADLVGYYRNEDGSRGDNLPDIADGNSIEINMTE
GKFMPGFVEGLIGADVGETRDVNVEFPATNPRPELAGVKAIFSVTIHAIK
DVVLPELNDDFAVQVSEEKNLENFRKTIRDRLDTESETAQEKNINSAIDN
ELAEIVQVDLPESLVENQVKNKFASMLASFKDKGMPDEQVKAMVTKENYE
MIKV*
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mRNA from alignment at tig00000904_pilon:434297..435584+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra10628.t1 ID=Ggra10628.t1|Name=Ggra10628.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1288bp|location=Sequence derived from alignment at tig00000904_pilon:434297..435584+ (Gracilaria gracilis GNS1m male)
ATGAACGCGCCTGGTTTTGCGAGCAGCGCTCCGCGCTTGCAGTTGCATCG
TCAAGGACGCCGCCCTTCATTATGTCCTGCTCGACCAAACATCTTCGCAC
CGGCCGTCTTGCGCATGGGTCTTTCTGTCAAGACAGCGCCCCTACCGAAG
AGCCAGTTGAGCATGGAGATATCAGTTGGCAAGGAAGAATGCAGTGCGGC
ATGGGATTCGATCGTCAAAGAGCTTTCAAAGAAGTCAAAAATTCAGGGCT
TTAGAAAGGGAACTGCTCCAAAACAACTCGTGATCAACCAGTATGGCAAA
GACAACATCAAAGCTAGTGCTTGCGAAGAAGTCATTGAAAAATCCATTCA
GAAAGCTCTGAAAGACTCTGGTATTCATGCCATTGGCCAAGCTCAAGTGG
ACAGTGATGGTGGTGTTGCATCTGTAATTGCCAATTACGATCCTCACTCC
TCCTTGACGTTTAAGGTGAAGATTGATGTCTGGCCTGAAGCATCTTTCAT
TTCTTCCTACGAGAGTCTCGAAATTGAGGCTGAAGAATCGGCATTCGACG
AGTCGCTCGTCGATAAGGCCCTCGAAGATTTGAGACAGAAGGAGGCGTTT
TCTGTCTTGGCACCTGAAGGCACAAAGGCAGAGCTGGGAAAGCTGCTTGT
AGCAGATCTCGTTGGGTATTATCGCAATGAAGATGGAAGTCGGGGAGACA
ATCTACCGGACATTGCTGATGGAAACTCCATCGAAATCAATATGACCGAA
GGAAAATTCATGCCTGGGTTTGTGGAAGGTTTGATTGGGGCCGACGTTGG
AGAAACCCGAGATGTAAATGTCGAGTTTCCGGCAACGAACCCACGACCTG
AGTTGGCAGGTGTAAAAGCGATCTTCTCCGTCACAATTCATGCCATAAAG
GACGTCGTTCTTCCGGAACTGAACGACGACTTTGCCGTCCAAGTCAGTGA
AGAAAAGAACCTTGAAAATTTTCGCAAGACCATTCGAGATAGACTTGATA
CGGAGTCTGAAACTGCCCAAGAGAAGAATATTAACTCTGCGATTGACAAT
GAGCTCGCCGAAATCGTTCAGGTTGACCTTCCCGAGTCTCTCGTTGAAAA
TCAGGTGAAGAACAAGTTTGCCTCGATGCTCGCTTCCTTCAAAGACAAAG
GTATGCCGGATGAGCAAGTGAAAGCCATGGTAACGAAAGAAAACTACGAA
ATGTACAAGACGCGAGCCAGAGGAAACGTGGAGAAAACCTTACGGGTGAA
CTTCGCCGTATCTCGCATTGCAAAGGATCAAAGTTTAG
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Coding sequence (CDS) from alignment at tig00000904_pilon:434297..435584+

>Ggra10628.t1 ID=Ggra10628.t1|Name=Ggra10628.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1215bp|location=Sequence derived from alignment at tig00000904_pilon:434297..435584+ (Gracilaria gracilis GNS1m male)
ATGAACGCGCCTGGTTTTGCGAGCAGCGCTCCGCGCTTGCAGTTGCATCG
TCAAGGACGCCGCCCTTCATTATGTCCTGCTCGACCAAACATCTTCGCAC
CGGCCGTCTTGCGCATGGGTCTTTCTGTCAAGACAGCGCCCCTACCGAAG
AGCCAGTTGAGCATGGAGATATCAGTTGGCAAGGAAGAATGCAGTGCGGC
ATGGGATTCGATCGTCAAAGAGCTTTCAAAGAAGTCAAAAATTCAGGGCT
TTAGAAAGGGAACTGCTCCAAAACAACTCGTGATCAACCAGTATGGCAAA
GACAACATCAAAGCTAGTGCTTGCGAAGAAGTCATTGAAAAATCCATTCA
GAAAGCTCTGAAAGACTCTGGTATTCATGCCATTGGCCAAGCTCAAGTGG
ACAGTGATGGTGGTGTTGCATCTGTAATTGCCAATTACGATCCTCACTCC
TCCTTGACGTTTAAGGTGAAGATTGATGTCTGGCCTGAAGCATCTTTCAT
TTCTTCCTACGAGAGTCTCGAAATTGAGGCTGAAGAATCGGCATTCGACG
AGTCGCTCGTCGATAAGGCCCTCGAAGATTTGAGACAGAAGGAGGCGTTT
TCTGTCTTGGCACCTGAAGGCACAAAGGCAGAGCTGGGAAAGCTGCTTGT
AGCAGATCTCGTTGGGTATTATCGCAATGAAGATGGAAGTCGGGGAGACA
ATCTACCGGACATTGCTGATGGAAACTCCATCGAAATCAATATGACCGAA
GGAAAATTCATGCCTGGGTTTGTGGAAGGTTTGATTGGGGCCGACGTTGG
AGAAACCCGAGATGTAAATGTCGAGTTTCCGGCAACGAACCCACGACCTG
AGTTGGCAGGTGTAAAAGCGATCTTCTCCGTCACAATTCATGCCATAAAG
GACGTCGTTCTTCCGGAACTGAACGACGACTTTGCCGTCCAAGTCAGTGA
AGAAAAGAACCTTGAAAATTTTCGCAAGACCATTCGAGATAGACTTGATA
CGGAGTCTGAAACTGCCCAAGAGAAGAATATTAACTCTGCGATTGACAAT
GAGCTCGCCGAAATCGTTCAGGTTGACCTTCCCGAGTCTCTCGTTGAAAA
TCAGGTGAAGAACAAGTTTGCCTCGATGCTCGCTTCCTTCAAAGACAAAG
GTATGCCGGATGAGCAAGTGAAAGCCATGGTAACGAAAGAAAACTACGAA
ATGATCAAAGTTTAG
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