Ggra10627.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra10627.t1
Unique NameGgra10627.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length217
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000904_piloncontigtig00000904_pilon:432541..433191 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog81824.XP_001750903.1
Preferred namePINX1
PFAMsG-patch
Max annot lvl33154|Opisthokonta
KEGG rclassRC00004,RC00037
KEGG koko:K11135,ko:K14457
KEGG ReactionR03755,R03756
KEGG Pathwayko00561,ko04975,map00561,map04975
GOsGO:0000070,GO:0000228,GO:0000278,GO:0000280,GO:0000494,GO:0000723,GO:0000775,GO:0000776,GO:0000777,GO:0000779,GO:0000781,GO:0000784,GO:0000793,GO:0000819,GO:0003674,GO:0003676,GO:0003723,GO:0004857,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005730,GO:0005819,GO:0005856,GO:0006139,GO:0006259,GO:0006278,GO:0006396,GO:0006725,GO:0006807,GO:0006996,GO:0007004,GO:0007049,GO:0007059,GO:0007080,GO:0007346,GO:0008047,GO:0008104,GO:0008150,GO:0008152,GO:0008285,GO:0009058,GO:0009059,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010389,GO:0010467,GO:0010521,GO:0010556,GO:0010558,GO:0010564,GO:0010605,GO:0010639,GO:0010833,GO:0010948,GO:0010972,GO:0015630,GO:0016043,GO:0016070,GO:0016074,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0022402,GO:0022613,GO:0030234,GO:0031123,GO:0031126,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031396,GO:0031397,GO:0031399,GO:0031400,GO:0031647,GO:0031974,GO:0031981,GO:0032200,GO:0032204,GO:0032205,GO:0032210,GO:0032211,GO:0032268,GO:0032269,GO:0032879,GO:0032880,GO:0032991,GO:0033036,GO:0033043,GO:0033044,GO:0033365,GO:0033967,GO:0034470,GO:0034502,GO:0034504,GO:0034613,GO:0034641,GO:0034645,GO:0034654,GO:0034660,GO:0034963,GO:0042127,GO:0042254,GO:0042592,GO:0043085,GO:0043086,GO:0043144,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043388,GO:0043628,GO:0044085,GO:0044092,GO:0044093,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044430,GO:0044446,GO:0044454,GO:0044464,GO:0044877,GO:0045786,GO:0045930,GO:0045934,GO:0046483,GO:0048285,GO:0048518,GO:0048519,GO:0048523,GO:0050000,GO:0050789,GO:0050790,GO:0050794,GO:0051052,GO:0051053,GO:0051098,GO:0051099,GO:0051101,GO:0051128,GO:0051129,GO:0051171,GO:0051172,GO:0051179,GO:0051234,GO:0051246,GO:0051248,GO:0051276,GO:0051303,GO:0051310,GO:0051338,GO:0051348,GO:0051640,GO:0051641,GO:0051649,GO:0051656,GO:0051726,GO:0051972,GO:0051974,GO:0060249,GO:0060255,GO:0060341,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070034,GO:0070198,GO:0070727,GO:0071704,GO:0071840,GO:0071897,GO:0080090,GO:0090304,GO:0097159,GO:0098687,GO:0098772,GO:0098813,GO:0140014,GO:1900180,GO:1900182,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1901987,GO:1901988,GO:1901990,GO:1901991,GO:1902570,GO:1902749,GO:1902750,GO:1903047,GO:1903320,GO:1903321,GO:1903827,GO:1903829,GO:1904356,GO:1904357,GO:1904742,GO:1904744,GO:1904749,GO:1904751,GO:2000112,GO:2000113,GO:2000278,GO:2000279,GO:2001251
Evalue9.71e-16
EggNOG OGsKOG2809@1|root,KOG2809@2759|Eukaryota,39E7U@33154|Opisthokonta
EC2.3.1.22
Descriptiontelomerase inhibitor activity
COG categoryAD
BRITEko00000,ko00001,ko01000,ko03009,ko03032
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra10627Ggra10627Gracilaria gracilis GNS1m malegenetig00000904_pilon 432541..433191 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10627.t1.start1Ggra10627.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000904_pilon 432541..432543 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10627.t1.CDS1Ggra10627.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000904_pilon 432541..433191 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10627.t1.exon1Ggra10627.t1.exon1Gracilaria gracilis GNS1m maleexontig00000904_pilon 432541..433191 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10627.t1.stop1Ggra10627.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000904_pilon 433189..433191 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10627.t1Ggra10627.t1Gracilaria gracilis GNS1m malepolypeptidetig00000904_pilon 432541..433191 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra10627.t1 ID=Ggra10627.t1|Name=Ggra10627.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=217bp
MAGAVDTRNQAWADDKSRFGLKMLQKMGWSEGKGLGREENGQVNPLRAKK
NFEKEGLGVSVVKNSSWDAPAQMAQGLNSVLAKLCSSNSYMVKREGGEQD
NVANRTVGFYARRAAQKDVKGYSSDALREIFGGVSEGNERKGKEKHKNGE
EGEKRKNGEEKGERDGLCQVEEETGKKQRLGGKRKKKYEKLGVSSKIKKP
HKGDKKKRKRKKEKTR*
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spliced messenger RNA

>Ggra10627.t1 ID=Ggra10627.t1|Name=Ggra10627.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=651bp|location=Sequence derived from alignment at tig00000904_pilon:432541..433191+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGGGCGCCGTCGACACTCGCAACCAAGCATGGGCGGACGACAAATC
CCGATTTGGCCTCAAGATGCTTCAAAAGATGGGGTGGAGCGAGGGAAAAG
GACTGGGACGTGAAGAGAATGGACAAGTGAATCCGTTACGGGCGAAGAAG
AATTTTGAGAAAGAAGGGCTAGGTGTTTCTGTTGTGAAGAACAGTTCCTG
GGATGCCCCGGCCCAAATGGCGCAGGGATTGAATAGCGTACTGGCCAAAC
TGTGCTCGAGCAATTCGTACATGGTCAAGCGGGAGGGGGGTGAACAAGAT
AATGTTGCGAATCGAACGGTTGGATTTTACGCACGCAGGGCGGCGCAAAA
GGATGTTAAGGGCTATTCTTCAGATGCGCTTCGAGAGATTTTTGGAGGGG
TGAGCGAAGGGAATGAGAGAAAAGGGAAGGAGAAACATAAGAATGGAGAA
GAGGGGGAGAAACGTAAGAATGGAGAAGAGAAGGGTGAGAGGGATGGTCT
GTGTCAGGTTGAAGAAGAAACAGGGAAGAAGCAGCGCCTCGGTGGAAAGC
GAAAGAAGAAGTACGAGAAACTGGGCGTTTCTTCAAAGATAAAGAAACCG
CACAAAGGCGACAAGAAAAAGCGAAAACGAAAGAAGGAAAAAACTCGATA
A
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protein sequence of Ggra10627.t1

>Ggra10627.t1 ID=Ggra10627.t1|Name=Ggra10627.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=217bp
MAGAVDTRNQAWADDKSRFGLKMLQKMGWSEGKGLGREENGQVNPLRAKK
NFEKEGLGVSVVKNSSWDAPAQMAQGLNSVLAKLCSSNSYMVKREGGEQD
NVANRTVGFYARRAAQKDVKGYSSDALREIFGGVSEGNERKGKEKHKNGE
EGEKRKNGEEKGERDGLCQVEEETGKKQRLGGKRKKKYEKLGVSSKIKKP
HKGDKKKRKRKKEKTR*
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mRNA from alignment at tig00000904_pilon:432541..433191+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra10627.t1 ID=Ggra10627.t1|Name=Ggra10627.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=651bp|location=Sequence derived from alignment at tig00000904_pilon:432541..433191+ (Gracilaria gracilis GNS1m male)
ATGGCGGGCGCCGTCGACACTCGCAACCAAGCATGGGCGGACGACAAATC
CCGATTTGGCCTCAAGATGCTTCAAAAGATGGGGTGGAGCGAGGGAAAAG
GACTGGGACGTGAAGAGAATGGACAAGTGAATCCGTTACGGGCGAAGAAG
AATTTTGAGAAAGAAGGGCTAGGTGTTTCTGTTGTGAAGAACAGTTCCTG
GGATGCCCCGGCCCAAATGGCGCAGGGATTGAATAGCGTACTGGCCAAAC
TGTGCTCGAGCAATTCGTACATGGTCAAGCGGGAGGGGGGTGAACAAGAT
AATGTTGCGAATCGAACGGTTGGATTTTACGCACGCAGGGCGGCGCAAAA
GGATGTTAAGGGCTATTCTTCAGATGCGCTTCGAGAGATTTTTGGAGGGG
TGAGCGAAGGGAATGAGAGAAAAGGGAAGGAGAAACATAAGAATGGAGAA
GAGGGGGAGAAACGTAAGAATGGAGAAGAGAAGGGTGAGAGGGATGGTCT
GTGTCAGGTTGAAGAAGAAACAGGGAAGAAGCAGCGCCTCGGTGGAAAGC
GAAAGAAGAAGTACGAGAAACTGGGCGTTTCTTCAAAGATAAAGAAACCG
CACAAAGGCGACAAGAAAAAGCGAAAACGAAAGAAGGAAAAAACTCGATA
A
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Coding sequence (CDS) from alignment at tig00000904_pilon:432541..433191+

>Ggra10627.t1 ID=Ggra10627.t1|Name=Ggra10627.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=651bp|location=Sequence derived from alignment at tig00000904_pilon:432541..433191+ (Gracilaria gracilis GNS1m male)
ATGGCGGGCGCCGTCGACACTCGCAACCAAGCATGGGCGGACGACAAATC
CCGATTTGGCCTCAAGATGCTTCAAAAGATGGGGTGGAGCGAGGGAAAAG
GACTGGGACGTGAAGAGAATGGACAAGTGAATCCGTTACGGGCGAAGAAG
AATTTTGAGAAAGAAGGGCTAGGTGTTTCTGTTGTGAAGAACAGTTCCTG
GGATGCCCCGGCCCAAATGGCGCAGGGATTGAATAGCGTACTGGCCAAAC
TGTGCTCGAGCAATTCGTACATGGTCAAGCGGGAGGGGGGTGAACAAGAT
AATGTTGCGAATCGAACGGTTGGATTTTACGCACGCAGGGCGGCGCAAAA
GGATGTTAAGGGCTATTCTTCAGATGCGCTTCGAGAGATTTTTGGAGGGG
TGAGCGAAGGGAATGAGAGAAAAGGGAAGGAGAAACATAAGAATGGAGAA
GAGGGGGAGAAACGTAAGAATGGAGAAGAGAAGGGTGAGAGGGATGGTCT
GTGTCAGGTTGAAGAAGAAACAGGGAAGAAGCAGCGCCTCGGTGGAAAGC
GAAAGAAGAAGTACGAGAAACTGGGCGTTTCTTCAAAGATAAAGAAACCG
CACAAAGGCGACAAGAAAAAGCGAAAACGAAAGAAGGAAAAAACTCGATA
A
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